Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005231

Physical Location & Seq

Genomic Coordinates Forward (+)

20281953 .. 20283228

Gene Structure 1276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG130500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCTTCTAGCTCAATGTCTTCTCGTAACTCGGGTTCATCTTGGACTGCCAAGCAGAACAAGGCATTCGAGAAGGCTCTAGCCCTTTACGACAAGGACACCCCCGACCGATGGTACAATGTTGCCAGGGCCGTGGGGAATAAGACTCCCGAGGAAGTTAAGAGGCACTATGACCTTCTTGTGGCAGATGTGAAGCATATCGAGTCCGGCCAAGTTCCTTTCCCGGATTACAGGACTTCTGGTGGGAGTGGGAGTGGGAGTGGCCATGGCAACATCGGTCATGATGAGGAAAAGAGGATGAGGAGCATGAAGCTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0080090 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

106

Amino Acids

11.72

Weight (kDa)

9.26

Isoelectric Point (pI)

72.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 57	1.8e-06	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	14 - 57	4.6e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21650
fragaria_vesca	FvH4_2g08910 FvH4_2g08910 FvH4_6g06380 FvH4_6g06380
malus_domestica	MD05G1065500.v1.1 MD10G1075200.v1.1
prunus_persica	Prupe.8G096300_v2.0.a1
pyrus_communis	pycom05g05690
rosa_chinensis	RchiOBHm_Chr3g0455471 RchiOBHm_Chr6g0264521
rosa_laevigata	RLG00000014247 RLG00000025357
rosa_multiflora	Rmu_sc0000578.1_g000011 Rmu_sc0005281.1_g000011
rosa_roxburghii	Rroxscaffold_176G00431860 Rroxscaffold_6G00424240
rosa_rugosa	Rorug03G0007800 Rorug06G0015800
rosa_samantha	Rh3AG067300 Rh3BG069600 Rh3CG068100 Rh3DG069700 Rh6AG132900 Rh6BG130500 Rh6CG128700 Rh6DG115900
rosa_wichuraiana	Rw0G009760 Rw3G005330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	208, 262
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	111, 181
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	12, 313
AluI	AGCT	2 cut(s)	12, 313
Ama87I	CYCGRG	2 cut(s)	31, 149
AoxI	GGCC	3 cut(s)	129, 208, 262
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	224
AvaI	CYCGRG	2 cut(s)	31, 149
BalI	TGGCCA	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	12
BccI	CCATC	1 cut(s)	105
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	2 cut(s)	9, 80
Bme1390I	CCNGG	2 cut(s)	127, 224
BmeT110I	CYCGRG	2 cut(s)	31, 149
BmgT120I	GGNCC	1 cut(s)	129
BmrFI	CCNGG	2 cut(s)	127, 224
BpiI	GAAGAC	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	224
BsaJI	CCNNGG	4 cut(s)	126, 132, 150, 265
BsaXI	ACNNNNNCTCC	4 cut(s)	238, 244, 268, 274
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 181
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	4 cut(s)	126, 132, 150, 265
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	111, 181
BseRI	GAGGAG	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	131, 210, 264
BsiEI	CGRYCG	1 cut(s)	109
BsiHKCI	CYCGRG	2 cut(s)	31, 149
BsiSI	CCGG	2 cut(s)	207, 224
BslI	CCNNNNNNNGG	2 cut(s)	111, 181
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	3 cut(s)	131, 210, 264
BsoBI	CYCGRG	2 cut(s)	31, 149
Bsp19I	CCATGG	1 cut(s)	265
BspANI	GGCC	3 cut(s)	131, 210, 264
BspHI	TCATGA	1 cut(s)	280
BssECI	CCNNGG	4 cut(s)	126, 132, 150, 265
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	127
BstDSI	CCRYGG	2 cut(s)	132, 265
BstF5I	GGATG	1 cut(s)	303
BstMCI	CGRYCG	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	125, 222
BstV2I	GAAGAC	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	131, 210, 264
BtgI	CCRYGG	2 cut(s)	132, 265
BtsCI	GGATG	1 cut(s)	303
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	3 cut(s)	266, 281, 307
CviJI	RGCY	8 cut(s)	5, 12, 77, 83, 131, 210, 264, 313
CviKI_1	RGCY	8 cut(s)	5, 12, 77, 83, 131, 210, 264, 313
CviQI	GTAC	1 cut(s)	115
EaeI	YGGCCR	2 cut(s)	208, 262
Eco130I	CCWWGG	1 cut(s)	265
Eco88I	CYCGRG	2 cut(s)	31, 149
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	3 cut(s)	269, 284, 310
FaiI	YATR	5 cut(s)	171, 198, 267, 282, 308
FatI	CATG	3 cut(s)	265, 280, 306
FokI	GGATG	1 cut(s)	310
FspBI	CTAG	2 cut(s)	9, 80
HaeIII	GGCC	3 cut(s)	131, 210, 264
HapII	CCGG	2 cut(s)	207, 224
Hin1II	CATG	3 cut(s)	269, 284, 310
HinfI	GANTC	2 cut(s)	145, 203
HpaII	CCGG	2 cut(s)	207, 224
Hpy188III	TCNNGA	3 cut(s)	70, 149, 281
HpyAV	CCTTC	2 cut(s)	67, 185
Hsp92II	CATG	3 cut(s)	269, 284, 310
LmnI	GCTCC	1 cut(s)	303
LpnPI	CCDG	6 cut(s)	112, 139, 217, 220, 225, 237
MaeI	CTAG	2 cut(s)	9, 80
MaeIII	GTNAC	1 cut(s)	26
MboII	GAAGA	1 cut(s)	12
MlsI	TGGCCA	1 cut(s)	264
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	2 cut(s)	139, 212
MnlI	CCTC	5 cut(s)	145, 156, 280, 288, 294
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	264
MspI	CCGG	2 cut(s)	207, 224
MspR9I	CCNGG	2 cut(s)	127, 224
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	127
NciI	CCSGG	1 cut(s)	224
NcoI	CCATGG	1 cut(s)	265
NlaIII	CATG	3 cut(s)	269, 284, 310
PagI	TCATGA	1 cut(s)	280
PctI	GAATGC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	222
PleI	GAGTC	2 cut(s)	139, 211
PpsI	GAGTC	2 cut(s)	139, 211
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	19, 51
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	159
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	2 cut(s)	139, 212
ScrFI	CCNGG	2 cut(s)	127, 224
SetI	ASST	3 cut(s)	14, 177, 315
SspMI	CTAG	2 cut(s)	9, 80
StyD4I	CCNGG	2 cut(s)	125, 222
StyI	CCWWGG	1 cut(s)	265
TaqI	TCGA	2 cut(s)	69, 201
TaqII	GACCGA	2 cut(s)	123, 266
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TspDTI	ATGAA	1 cut(s)	27
XspI	CTAG	2 cut(s)	9, 80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.