Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005231

Physical Location & Seq

Genomic Coordinates Reverse (-)

4444991 .. 4445894

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCATCCAGCTCAATGAGTACTTCCTGTAACTCGGGCTCGTCTTGGACTGCCAAGCAGAACAAGGCCTTCGAGATAGCTCTAGCCCTTTACGACAAGGACACCGCCGACCGCTGGTACAATGTTGCCAGGGCCGTTGGGAATAAGACTCCCGAGGAAGTTAAGAGGCACTATGACCTTCTTGTGGAAGATGTGAAGCTTATCGAGTCCGGCCAAATTCCTTTCCCGGATTACATGACTTGTGGTGGGAGTGGGAGTGGCAACATCGGTCATGATGAGGAAAAGAGGATGAGGAACCTGAAGCTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0080090 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

103

Amino Acids

11.46

Weight (kDa)

6.27

Isoelectric Point (pI)

73.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21650
fragaria_vesca	FvH4_2g08910 FvH4_2g08910 FvH4_6g06380 FvH4_6g06380
malus_domestica	MD05G1065500.v1.1 MD10G1075200.v1.1
prunus_persica	Prupe.8G096300_v2.0.a1
pyrus_communis	pycom05g05690
rosa_chinensis	RchiOBHm_Chr3g0455471 RchiOBHm_Chr6g0264521
rosa_laevigata	RLG00000014247 RLG00000025357
rosa_multiflora	Rmu_sc0000578.1_g000011 Rmu_sc0005281.1_g000011
rosa_roxburghii	Rroxscaffold_176G00431860 Rroxscaffold_6G00424240
rosa_rugosa	Rorug03G0007800 Rorug06G0015800
rosa_samantha	Rh3AG067300 Rh3BG069600 Rh3CG068100 Rh3DG069700 Rh6AG132900 Rh6BG130500 Rh6CG128700 Rh6DG115900
rosa_wichuraiana	Rw0G009760 Rw3G005330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	105, 112
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	216
AfaI	GTAC	2 cut(s)	22, 119
AfiI	CCNNNNNNNGG	2 cut(s)	114, 184
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	4 cut(s)	12, 80, 199, 304
AluI	AGCT	4 cut(s)	12, 80, 199, 304
Ama87I	CYCGRG	2 cut(s)	34, 152
AoxI	GGCC	3 cut(s)	66, 132, 211
ApoI	RAATTY	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	227
AvaI	CYCGRG	2 cut(s)	34, 152
BanII	GRGCYC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	227
BfaI	CTAG	1 cut(s)	83
BmcAI	AGTACT	1 cut(s)	22
Bme1390I	CCNGG	2 cut(s)	130, 227
BmeT110I	CYCGRG	2 cut(s)	34, 152
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	2 cut(s)	130, 227
BmsI	GCATC	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	129, 153
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 184
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	129, 153
BseGI	GGATG	2 cut(s)	5, 294
BseLI	CCNNNNNNNGG	2 cut(s)	114, 184
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	3 cut(s)	68, 134, 213
BsiEI	CGRYCG	1 cut(s)	112
BsiHKCI	CYCGRG	2 cut(s)	34, 152
BsiSI	CCGG	2 cut(s)	210, 227
BslI	CCNNNNNNNGG	2 cut(s)	114, 184
BsnI	GGCC	3 cut(s)	68, 134, 213
BsoBI	CYCGRG	2 cut(s)	34, 152
Bsp1286I	GDGCHC	1 cut(s)	41
BspACI	CCGC	2 cut(s)	105, 112
BspANI	GGCC	3 cut(s)	68, 134, 213
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	129, 153
Bst2UI	CCWGG	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	5, 294
BstMCI	CGRYCG	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	2 cut(s)	128, 225
BsuRI	GGCC	3 cut(s)	68, 134, 213
BtsCI	GGATG	2 cut(s)	5, 294
BtsIMutI	CAGTG	1 cut(s)	307
CciI	TCATGA	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	21, 118
CviAII	CATG	2 cut(s)	235, 272
CviJI	RGCY	9 cut(s)	12, 39, 68, 80, 86, 134, 199, 213, 304
CviKI_1	RGCY	9 cut(s)	12, 39, 68, 80, 86, 134, 199, 213, 304
CviQI	GTAC	2 cut(s)	21, 118
EaeI	YGGCCR	1 cut(s)	211
Eco147I	AGGCCT	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	41
Eco88I	CYCGRG	2 cut(s)	34, 152
EcoRII	CCWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	2 cut(s)	238, 275
FaiI	YATR	3 cut(s)	174, 236, 273
FatI	CATG	2 cut(s)	234, 271
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	41
FspBI	CTAG	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	68, 134, 213
HapII	CCGG	2 cut(s)	210, 227
Hin1II	CATG	2 cut(s)	238, 275
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	2 cut(s)	148, 206
HpaII	CCGG	2 cut(s)	210, 227
Hpy188III	TCNNGA	3 cut(s)	73, 152, 272
HpyAV	CCTTC	2 cut(s)	79, 188
Hsp92II	CATG	2 cut(s)	238, 275
LmnI	GCTCC	1 cut(s)	309
LpnPI	CCDG	7 cut(s)	22, 40, 100, 115, 142, 223, 240
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	29
MboII	GAAGA	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	2 cut(s)	142, 215
MnlI	CCTC	5 cut(s)	148, 159, 271, 279, 285
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	2 cut(s)	210, 227
MspR9I	CCNGG	2 cut(s)	130, 227
MvaI	CCWGG	1 cut(s)	130
NciI	CCSGG	1 cut(s)	227
NlaIII	CATG	2 cut(s)	238, 275
NlaIV	GGNNCC	1 cut(s)	296
PagI	TCATGA	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	68
PfoI	TCCNGGA	1 cut(s)	225
PleI	GAGTC	2 cut(s)	142, 214
PpsI	GAGTC	2 cut(s)	142, 214
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	1 cut(s)	132
RsaI	GTAC	2 cut(s)	22, 119
RsaNI	GTAC	2 cut(s)	21, 118
SaqAI	TTAA	1 cut(s)	162
Sau96I	GGNCC	1 cut(s)	132
ScaI	AGTACT	1 cut(s)	22
SchI	GAGTC	2 cut(s)	142, 215
ScrFI	CCNGG	2 cut(s)	130, 227
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	6 cut(s)	14, 82, 180, 201, 300, 306
SfaNI	GCATC	1 cut(s)	14
Sse9I	AATT	1 cut(s)	216
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	2 cut(s)	105, 112
SspMI	CTAG	1 cut(s)	83
StuI	AGGCCT	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	128, 225
TaqI	TCGA	2 cut(s)	72, 204
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	1 cut(s)	216
TatI	WGTACW	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
XapI	RAATTY	1 cut(s)	216
XspI	CTAG	1 cut(s)	83
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.