Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001367

Physical Location & Seq

Genomic Coordinates Reverse (-)

611383 .. 614118

Gene Structure 2736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0007800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTCAAAGAAAAAAGCAATACAAGCAAGATTGAGGAACAATTGGCCAGAGCAAGAGCAGCTATCCACAAAGCAGTTCTTACAAAGAACTATACATCTGATAGACAAGAGATTTACATCCCCAGAGGAAGTGTGTACAGAAATCCCTATGCATTTCATCACTATTTGGGTTAGCAGGAGTCACATAGAGATGGTAAAAAGATTCAAGATATGGGCATACAAGGAAGGGGAGATACCCATGTTCCATAATGGACCAATGTCATACATCTACTCCATAGAAGGGCAGTTCATGGATGAGCTGGATAGTAGTGGGAAAAGTCCATTTCTGGCTCGCCATCTTCATGAGGCACATTCATTCTTCGTACCAGTAAGTGTGAAAAGGATTGCTGATTTCTTGTATGATCGGCCTAAACCTCACACTTTTCACGGTCGCTTGGTTCGTATCGTCACTGACTATATCAATGTGGTCGCTCAAAAATATCCCTACTGGAATAGGAGCGAGGGAGCTGACCATTTTATGGTCTCTTGTCATGATTGGGCACCAGAAATAATAAATGATGATCTTAAGTTCTACAAGAATTTCATAAGAGTACTTTGCAATGCTAACATATCCGAAGGATTCCAGCCTGGGAGAGACGTCTCGTTGCCAGAATATAACTTGGCCAGTGGCACTCTTGGTCCATCACGCCTTAACTCACACCCTGATGAGCGTCCTATCCTGGCCTTCTTTGCGGGCGGTGCTCATGGTGACATAAGGAAGTTTTTATTTGAGCATTGGAGGGACAAAGATGAGGAAATCCAAGTCCATGAGTATCTTCCGAAGGGTCAAAATTATCACCAAATAATGGGACAAAGTAAGTTTTGCTTGTGTCCAAGTGGGACTGAAGTTGCTAGTCCTAGAGTGGTTGAAGCAATGTATGCAGGATGTGTTCCGGTGCTCATTTCTGATTATTATGCATTACCCTTTGGCGATGTTCTTGATTGGAGCAAGTTTACAGTAGAAATTCCACCAAAGAGAATACCAGAAATTAAGACGATATTGAAAGCTGTTTCGCATGCAGAATACTTGAAATTGCAGAAGAGGGTGATGCAAGTGAGAAGGCATTTTGAGCTGAACCGGCCTGCTAAGCCATTTGATGTGTTTCACATGGTGCTTCACTCAATTTGGCTGAGGAGGCTAAACATTAGACTACCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

399

Amino Acids

46.68

Weight (kDa)

8.84

Isoelectric Point (pI)

57.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	66 - 349	2.6e-59	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62770 AT3G62770
fragaria_vesca	FvH4_2g25170 FvH4_6g06350 FvH4_6g06350 FvH4_6g06350 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370
malus_domestica	MD03G1283100.v1.1 MD04G1202000.v1.1 MD11G1303400.v1.1 MD12G1216000.v1.1 MD12G1216100.v1.1
prunus_persica	Prupe.6G322300_v2.0.a1 Prupe.8G256500_v2.0.a1
pyrus_communis	pycom03g22400 pycom04g17820 pycom11g26510 pycom12g20160
rosa_chinensis	RchiOBHm_Chr3g0455431 RchiOBHm_Chr3g0455461 RchiOBHm_Chr6g0293291
rosa_laevigata	RLG00000011961 RLG00000025360 RLG00000025363
rosa_multiflora	Rmu_sc0003728.1_g000001 Rmu_sc0008350.1_g000001 Rmu_ssc0000162.1_g000036
rosa_roxburghii	Rroxscaffold_6G00424260 Rroxscaffold_6G00424290 Rroxscaffold_7G00174280
rosa_rugosa	Rorug03G0007500 Rorug03G0007800 Rorug06G0234300
rosa_samantha	Rh2AG090700 Rh3AG066800 Rh3AG067200 Rh3BG069200 Rh3BG069500 Rh3CG067600 Rh3CG068000 Rh3DG069200 Rh3DG069500 Rh5BG179700 Rh6AG347100 Rh6BG354400 Rh6CG214700 Rh6DG204600
rosa_wichuraiana	Rw3G005280 Rw3G005310 Rw6G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	639
AccB1I	GGYRCC	1 cut(s)	538
AccB7I	CCANNNNNTGG	2 cut(s)	517, 844
AciI	CCGC	2 cut(s)	731, 735
AcoI	YGGCCR	2 cut(s)	44, 660
AcsI	RAATTY	2 cut(s)	577, 1002
AcuI	CTGAAG	1 cut(s)	903
AcyI	GRCGYC	1 cut(s)	636
AdeI	CACNNNGTG	1 cut(s)	1150
AfaI	GTAC	3 cut(s)	136, 363, 591
AfiI	CCNNNNNNNGG	3 cut(s)	279, 517, 844
AflII	CTTAAG	1 cut(s)	563
AgsI	TTSAA	4 cut(s)	205, 908, 1042, 1069
AjnI	CCWGG	2 cut(s)	625, 717
AluBI	AGCT	5 cut(s)	61, 298, 506, 1046, 1111
AluI	AGCT	5 cut(s)	61, 298, 506, 1046, 1111
Alw21I	GWGCWC	2 cut(s)	742, 939
Alw26I	GTCTC	3 cut(s)	526, 627, 643
AoxI	GGCC	5 cut(s)	44, 404, 660, 720, 1118
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	2 cut(s)	577, 1002
AspS9I	GGNCC	2 cut(s)	251, 677
AsuHPI	GGTGA	3 cut(s)	758, 827, 1096
AvaII	GGWCC	2 cut(s)	251, 677
BaeGI	GKGCMC	1 cut(s)	541
BaeI	ACNNNNGTAYC	2 cut(s)	224, 257
BalI	TGGCCA	2 cut(s)	46, 662
BanI	GGYRCC	1 cut(s)	538
BarI	GAAGNNNNNNTAC	2 cut(s)	216, 248
Bbv12I	GWGCWC	2 cut(s)	742, 939
BbvCI	CCTCAGC	1 cut(s)	1169
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	3 cut(s)	184, 342, 688
BciT130I	CCWGG	2 cut(s)	627, 719
BcoDI	GTCTC	3 cut(s)	526, 627, 643
BfaI	CTAG	2 cut(s)	891, 897
BfrI	CTTAAG	1 cut(s)	563
BisI	GCNGC	1 cut(s)	59
BlpI	GCTNAGC	1 cut(s)	1125
BlsI	GCNGC	1 cut(s)	60
BmcAI	AGTACT	1 cut(s)	591
Bme1390I	CCNGG	2 cut(s)	627, 719
Bme18I	GGWCC	2 cut(s)	251, 677
BmgT120I	GGNCC	2 cut(s)	251, 677
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	2 cut(s)	627, 719
BmsI	GCATC	1 cut(s)	1077
BoxI	GACNNNNGTC	1 cut(s)	256
Bpu10I	CCTNAGC	1 cut(s)	1169
Bpu1102I	GCTNAGC	1 cut(s)	1125
BsaBI	GATNNNNATC	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	636
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	1 cut(s)	626
BsaWI	WCCGGW	1 cut(s)	931
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	3 cut(s)	279, 517, 844
Bse118I	RCCGGY	1 cut(s)	1116
Bse1I	ACTGG	3 cut(s)	365, 491, 663
Bse3DI	GCAATG	2 cut(s)	604, 918
Bse8I	GATNNNNATC	1 cut(s)	115
BseBI	CCWGG	2 cut(s)	627, 719
BseDI	CCNNGG	1 cut(s)	626
BseGI	GGATG	3 cut(s)	116, 298, 929
BseJI	GATNNNNATC	1 cut(s)	115
BseLI	CCNNNNNNNGG	3 cut(s)	279, 517, 844
BseMI	GCAATG	2 cut(s)	604, 918
BseMII	CTCAG	1 cut(s)	1160
BseNI	ACTGG	3 cut(s)	365, 491, 663
BseRI	GAGGAG	1 cut(s)	1186
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	1 cut(s)	70
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	5 cut(s)	46, 406, 662, 722, 1120
BshNI	GGYRCC	1 cut(s)	538
BsiEI	CGRYCG	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	742, 939
BsiSI	CCGG	2 cut(s)	932, 1117
BslFI	GGGAC	3 cut(s)	794, 861, 892
BslI	CCNNNNNNNGG	3 cut(s)	279, 517, 844
BsmAI	GTCTC	3 cut(s)	526, 627, 643
BsmBI	CGTCTC	2 cut(s)	627, 643
BsmFI	GGGAC	3 cut(s)	794, 861, 892
BsnI	GGCC	5 cut(s)	46, 406, 662, 722, 1120
Bso31I	GGTCTC	1 cut(s)	526
Bsp1286I	GDGCHC	3 cut(s)	541, 742, 939
Bsp1407I	TGTACA	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	400, 559
Bsp1720I	GCTNAGC	1 cut(s)	1125
BspACI	CCGC	2 cut(s)	731, 735
BspANI	GGCC	5 cut(s)	46, 406, 662, 722, 1120
BspCNI	CTCAG	1 cut(s)	1161
BspHI	TCATGA	2 cut(s)	340, 529
BspLI	GGNNCC	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	538
BspTI	CTTAAG	1 cut(s)	563
BspTNI	GGTCTC	1 cut(s)	526
BsrDI	GCAATG	2 cut(s)	604, 918
BsrFI	RCCGGY	1 cut(s)	1116
BsrGI	TGTACA	1 cut(s)	134
BsrI	ACTGG	3 cut(s)	365, 491, 663
BssAI	RCCGGY	1 cut(s)	1116
BssECI	CCNNGG	1 cut(s)	626
BssMI	GATC	2 cut(s)	400, 559
BssNI	GRCGYC	1 cut(s)	636
Bst2UI	CCWGG	2 cut(s)	627, 719
Bst4CI	ACNGT	2 cut(s)	428, 997
Bst6I	CTCTTC	1 cut(s)	1073
BstACI	GRCGYC	1 cut(s)	636
BstAFI	CTTAAG	1 cut(s)	563
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstAUI	TGTACA	1 cut(s)	134
BstC8I	GCNNGC	4 cut(s)	331, 733, 1056, 1122
BstDEI	CTNAG	2 cut(s)	1125, 1169
BstF5I	GGATG	3 cut(s)	116, 298, 929
BstKTI	GATC	2 cut(s)	403, 562
BstMAI	GTCTC	3 cut(s)	526, 627, 643
BstMBI	GATC	2 cut(s)	400, 559
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	9 cut(s)	23, 58, 728, 737, 917, 1108, 1117, 1126, 1174
BstNI	CCWGG	2 cut(s)	627, 719
BstNSI	RCATGY	1 cut(s)	1058
BstPAI	GACNNNNGTC	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	625, 717
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	70
BsuRI	GGCC	5 cut(s)	46, 406, 662, 722, 1120
BtgZI	GCGATG	1 cut(s)	984
BtsCI	GGATG	3 cut(s)	116, 298, 929
BtsIMutI	CAGTG	2 cut(s)	447, 670
Cac8I	GCNNGC	4 cut(s)	331, 733, 1056, 1122
CciI	TCATGA	2 cut(s)	340, 529
Cfr10I	RCCGGY	1 cut(s)	1116
Cfr13I	GGNCC	2 cut(s)	251, 677
CseI	GACGC	1 cut(s)	698
Csp6I	GTAC	3 cut(s)	135, 362, 590
CviAII	CATG	8 cut(s)	238, 289, 341, 530, 743, 806, 1055, 1147
CviQI	GTAC	3 cut(s)	135, 362, 590
DdeI	CTNAG	2 cut(s)	1125, 1169
DpnI	GATC	2 cut(s)	402, 561
DpnII	GATC	2 cut(s)	400, 559
DraIII	CACNNNGTG	1 cut(s)	1150
EaeI	YGGCCR	2 cut(s)	44, 660
Eam1104I	CTCTTC	1 cut(s)	1073
EarI	CTCTTC	1 cut(s)	1073
Eco31I	GGTCTC	1 cut(s)	526
Eco47I	GGWCC	2 cut(s)	251, 677
Eco57I	CTGAAG	1 cut(s)	903
EcoRII	CCWGG	2 cut(s)	625, 717
EcoT22I	ATGCAT	2 cut(s)	153, 958
Esp3I	CGTCTC	2 cut(s)	627, 643
FaeI	CATG	8 cut(s)	241, 292, 344, 533, 746, 809, 1058, 1150
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 848, 880
FaqI	GGGAC	3 cut(s)	794, 861, 892
FatI	CATG	8 cut(s)	237, 288, 340, 529, 742, 805, 1054, 1146
FauI	CCCGC	1 cut(s)	724
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	3 cut(s)	103, 305, 936
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	2 cut(s)	891, 897
GluI	GCNGC	1 cut(s)	59
HaeIII	GGCC	5 cut(s)	46, 406, 662, 722, 1120
HapII	CCGG	2 cut(s)	932, 1117
HgaI	GACGC	1 cut(s)	698
Hin1I	GRCGYC	1 cut(s)	636
Hin1II	CATG	8 cut(s)	241, 292, 344, 533, 746, 809, 1058, 1150
HinfI	GANTC	3 cut(s)	178, 201, 618
HpaII	CCGG	2 cut(s)	932, 1117
HphI	GGTGA	3 cut(s)	758, 827, 1096
Hpy166II	GTNNAC	2 cut(s)	135, 993
Hpy188I	TCNGA	4 cut(s)	99, 613, 819, 946
Hpy188III	TCNNGA	4 cut(s)	205, 341, 530, 977
Hpy8I	GTNNAC	2 cut(s)	135, 993
HpyAV	CCTTC	6 cut(s)	218, 272, 608, 733, 814, 1092
HpyCH4III	ACNGT	2 cut(s)	428, 997
HpyCH4IV	ACGT	1 cut(s)	636
HpyCH4V	TGCA	7 cut(s)	151, 597, 920, 956, 1058, 1075, 1090
HpyF10VI	GCNNNNNNNGC	9 cut(s)	23, 58, 728, 737, 917, 1108, 1117, 1126, 1174
HpyF3I	CTNAG	2 cut(s)	1125, 1169
HpySE526I	ACGT	1 cut(s)	636
Hsp92I	GRCGYC	1 cut(s)	636
Hsp92II	CATG	8 cut(s)	241, 292, 344, 533, 746, 809, 1058, 1150
Kzo9I	GATC	2 cut(s)	400, 559
LmnI	GCTCC	3 cut(s)	495, 503, 984
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	1077
MaeI	CTAG	2 cut(s)	891, 897
MaeII	ACGT	1 cut(s)	636
MaeIII	GTNAC	3 cut(s)	179, 445, 746
MalI	GATC	2 cut(s)	402, 561
MboI	GATC	2 cut(s)	400, 559
MboII	GAAGA	4 cut(s)	329, 349, 806, 1090
MfeI	CAATTG	1 cut(s)	40
MhlI	GDGCHC	3 cut(s)	541, 742, 939
MlsI	TGGCCA	2 cut(s)	46, 662
MluCI	AATT	7 cut(s)	40, 577, 829, 1002, 1026, 1070, 1161
MluNI	TGGCCA	2 cut(s)	46, 662
MlyI	GAGTC	1 cut(s)	187
Mox20I	TGGCCA	2 cut(s)	46, 662
Mph1103I	ATGCAT	2 cut(s)	153, 958
MscI	TGGCCA	2 cut(s)	46, 662
MseI	TTAA	4 cut(s)	564, 690, 1029, 1198
MslI	CAYNNNNRTG	3 cut(s)	188, 339, 702
Msp20I	TGGCCA	2 cut(s)	46, 662
MspCI	CTTAAG	1 cut(s)	563
MspI	CCGG	2 cut(s)	932, 1117
MspR9I	CCNGG	2 cut(s)	627, 719
MunI	CAATTG	1 cut(s)	40
MvaI	CCWGG	2 cut(s)	627, 719
MwoI	GCNNNNNNNGC	9 cut(s)	23, 58, 728, 737, 917, 1108, 1117, 1126, 1174
NdeII	GATC	2 cut(s)	400, 559
NlaIII	CATG	8 cut(s)	241, 292, 344, 533, 746, 809, 1058, 1150
NlaIV	GGNNCC	1 cut(s)	540
NmuCI	GTSAC	3 cut(s)	179, 445, 746
NsiI	ATGCAT	2 cut(s)	153, 958
NspI	RCATGY	1 cut(s)	1058
PaeI	GCATGC	1 cut(s)	1058
PagI	TCATGA	2 cut(s)	340, 529
PcsI	WCGNNNNNNNCGW	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	201, 618
PflMI	CCANNNNNTGG	2 cut(s)	517, 844
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
PshAI	GACNNNNGTC	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	625, 717
PspGI	CCWGG	2 cut(s)	625, 717
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	2 cut(s)	251, 677
RsaI	GTAC	3 cut(s)	136, 363, 591
RsaNI	GTAC	3 cut(s)	135, 362, 590
RseI	CAYNNNNRTG	3 cut(s)	188, 339, 702
SaqAI	TTAA	4 cut(s)	564, 690, 1029, 1198
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	2 cut(s)	400, 559
Sau96I	GGNCC	2 cut(s)	251, 677
ScaI	AGTACT	1 cut(s)	591
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	2 cut(s)	627, 719
SduI	GDGCHC	3 cut(s)	541, 742, 939
SetI	ASST	7 cut(s)	63, 300, 415, 508, 639, 1048, 1113
SfaNI	GCATC	1 cut(s)	1077
SinI	GGWCC	2 cut(s)	251, 677
SmiMI	CAYNNNNRTG	3 cut(s)	188, 339, 702
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
SphI	GCATGC	1 cut(s)	1058
Sse9I	AATT	7 cut(s)	40, 577, 829, 1002, 1026, 1070, 1161
SsiI	CCGC	2 cut(s)	731, 735
SspMI	CTAG	2 cut(s)	891, 897
StyD4I	CCNGG	2 cut(s)	625, 717
TaaI	ACNGT	2 cut(s)	428, 997
TaiI	ACGT	1 cut(s)	639
TasI	AATT	7 cut(s)	40, 577, 829, 1002, 1026, 1070, 1161
TatI	WGTACW	2 cut(s)	134, 589
TfiI	GAWTC	2 cut(s)	201, 618
Tru1I	TTAA	4 cut(s)	564, 690, 1029, 1198
Tru9I	TTAA	4 cut(s)	564, 690, 1029, 1198
TscAI	CASTG	2 cut(s)	454, 670
TseFI	GTSAC	3 cut(s)	179, 445, 746
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	3 cut(s)	179, 445, 746
TspDTI	ATGAA	5 cut(s)	145, 277, 329, 342, 571
TspRI	CASTG	2 cut(s)	454, 670
Van91I	CCANNNNNTGG	2 cut(s)	517, 844
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	251, 677
XapI	RAATTY	2 cut(s)	577, 1002
XceI	RCATGY	1 cut(s)	1058
XspI	CTAG	2 cut(s)	891, 897
ZraI	GACGTC	1 cut(s)	637
ZrmI	AGTACT	1 cut(s)	591
Zsp2I	ATGCAT	2 cut(s)	153, 958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.