Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001367

Physical Location & Seq

Genomic Coordinates Forward (+)

4436021 .. 4438043

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGACCACCACCGCGTTTTCCTTTTCCTCACCTCCCTTTCAATTCCCCGTCCCCGATTTAATGGCCTCCGACTGCGCCCCCGACGACTCCTACTGTCCCTCCCCGGCTCAAAACCCGACTCCGACTCCAATTCCTCTTCCCCCGGCCCAGCTCCTCAACCTCTCGTTCAACCAGGACCACGGCTGCTTCGCCGCCGGCACCGACCTCGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGATCTTCCGCCGCGACTTCGGCCCACGCGGCGCCGTCGGGCTGGTCCAGATGCTCTTCCGCTGCAACATCCTCACCATCGTCGGCGGCGGCCCCGACCCCCTCTACTCCCCCAACAAGGTCATGATCTGGGACGACCACCAGTCCCGCTGCATCGGCGAGCTCTCCTTCCGCTCCGAGGTCAAAGCCGTCAAGCTCCGCCGCGACCGCATCGTCGTCGTTCTGGTCCAGAAGATCTTCGTCTACAATTTCGCCGATTTGAAGCTTCTCCACCAGATTGAGACCATCGCCAACCCCAAGGGACTCTGCGAGGTCTCGCACGTCGGCCCTCAGGCGGTGCTCGTCTGCCCGGGGCTCCAGAAAGGTCAAATTCGGGTCGAGCATTACGGGTCGAAGCGGACCAAGTTTATTATGGCCCACGATTCCAGGCTGGCCTGCTTCGCTCTCACGCAGGACGGCAGGTTGCTCGCCACCGCCAGCAGTAAGGGGACTTTGATCAGAGTTTTCAATACTCTGGATGGTTCATTGCTGCAAGAGGTAAGGAGAGGAGCAGATAGAGCAGAGATACATAGTCTTGCTTTCTCTGCTAATGCCCAATGGCTAGCTGTCTCGAGTGACAAGGGAACTATCCATGTTTTCAATCTGAAGGTTGATTCAGGATCCTTGGGGCATATCAGTCCATCAGAATCCAGTCCTCCTCATCCATCAGGCGTTTCATCTCTTTCTTTCATGAAAGGTGTTCTGCCAAGGTATTTCAGCTCAGAATGGTCAGTGGCTAAATTTCACTTGCACGAAGGTTTGGAGTACATTGTTGCCTTTGGCCACCAGAAGAACACTGTCGTGGTTCTAGGCATGGATGGAAGCTTCTATCGTTGTGAATTTGACCCTGTCAATGGAGGAGAAATGACTCAGCTTGAATATTATAATTTCTTGAAGCCAGAAGAAACCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

397

Amino Acids

43.92

Weight (kDa)

6.89

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	53 - 300	2.5e-33	PROPPIN
Beta-prop_THOC3	PF25174	119 - 296	1.8e-13	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	148 - 324	1.4e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	153 - 297	7.3e-08	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	188 - 296	1.9e-07	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	200 - 303	1.1e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	214 - 295	1e-07	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	214 - 298	7.4e-06	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	219 - 296	1.9e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62770 AT3G62770
fragaria_vesca	FvH4_2g25170 FvH4_6g06350 FvH4_6g06350 FvH4_6g06350 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370
malus_domestica	MD03G1283100.v1.1 MD04G1202000.v1.1 MD11G1303400.v1.1 MD12G1216000.v1.1 MD12G1216100.v1.1
prunus_persica	Prupe.6G322300_v2.0.a1 Prupe.8G256500_v2.0.a1
pyrus_communis	pycom03g22400 pycom04g17820 pycom11g26510 pycom12g20160
rosa_chinensis	RchiOBHm_Chr3g0455431 RchiOBHm_Chr3g0455461 RchiOBHm_Chr6g0293291
rosa_laevigata	RLG00000011961 RLG00000025360 RLG00000025363
rosa_multiflora	Rmu_sc0003728.1_g000001 Rmu_sc0008350.1_g000001 Rmu_ssc0000162.1_g000036
rosa_roxburghii	Rroxscaffold_6G00424260 Rroxscaffold_6G00424290 Rroxscaffold_7G00174280
rosa_rugosa	Rorug03G0007500 Rorug03G0007800 Rorug06G0234300
rosa_samantha	Rh2AG090700 Rh3AG066800 Rh3AG067200 Rh3BG069200 Rh3BG069500 Rh3CG067600 Rh3CG068000 Rh3DG069200 Rh3DG069500 Rh5BG179700 Rh6AG347100 Rh6BG354400 Rh6CG214700 Rh6DG204600
rosa_wichuraiana	Rw3G005280 Rw3G005310 Rw6G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1164
AasI	GACNNNNNNGTC	1 cut(s)	452
Acc36I	ACCTGC	1 cut(s)	690
AccB1I	GGYRCC	2 cut(s)	197, 272
AccBSI	CCGCTC	1 cut(s)	414
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	5 cut(s)	14, 240, 255, 270, 444
AclWI	GGATC	2 cut(s)	894, 907
AcoI	YGGCCR	1 cut(s)	1060
AcsI	RAATTY	3 cut(s)	609, 1019, 1118
AcuI	CTGAAG	1 cut(s)	905
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	1 cut(s)	1046
AfiI	CCNNNNNNNGG	4 cut(s)	358, 418, 574, 1133
AgsI	TTSAA	7 cut(s)	41, 169, 502, 748, 880, 1157, 1174
AhdI	GACNNNNNGTC	1 cut(s)	382
AjiI	CACGTC	1 cut(s)	562
AjnI	CCWGG	2 cut(s)	171, 665
AleI	CACNNNNGTG	1 cut(s)	1079
AluBI	AGCT	8 cut(s)	151, 403, 436, 505, 845, 999, 1104, 1153
AluI	AGCT	8 cut(s)	151, 403, 436, 505, 845, 999, 1104, 1153
Alw21I	GWGCWC	2 cut(s)	405, 582
Alw26I	GTCTC	3 cut(s)	515, 559, 853
AlwI	GGATC	2 cut(s)	894, 907
Ama87I	CYCGRG	2 cut(s)	589, 850
AoxI	GGCC	8 cut(s)	63, 144, 262, 331, 565, 654, 672, 1060
ApeKI	GCWGC	4 cut(s)	183, 303, 390, 769
ApoI	RAATTY	3 cut(s)	609, 1019, 1118
Asp700I	GAANNNNTTC	1 cut(s)	476
AspLEI	GCGC	2 cut(s)	77, 275
AspS9I	GGNCC	9 cut(s)	145, 175, 263, 286, 332, 466, 566, 639, 655
AsuC2I	CCSGG	4 cut(s)	104, 143, 590, 591
AsuHPI	GGTGA	2 cut(s)	21, 307
AsuNHI	GCTAGC	1 cut(s)	841
AvaI	CYCGRG	2 cut(s)	589, 850
AvaII	GGWCC	4 cut(s)	175, 286, 466, 639
AxyI	CCTNAGG	1 cut(s)	570
BalI	TGGCCA	1 cut(s)	1062
BamHI	GGATCC	1 cut(s)	899
BanI	GGYRCC	2 cut(s)	197, 272
BanII	GRGCYC	2 cut(s)	405, 597
Bbv12I	GWGCWC	2 cut(s)	405, 582
BbvI	GCAGC	4 cut(s)	170, 290, 377, 756
BccI	CCATC	6 cut(s)	326, 533, 752, 928, 952, 1091
BceAI	ACGGC	4 cut(s)	196, 260, 413, 712
BcgI	CGANNNNNNTGC	6 cut(s)	187, 221, 439, 473, 688, 722
BciT130I	CCWGG	2 cut(s)	173, 667
BclI	TGATCA	1 cut(s)	735
BcnI	CCSGG	4 cut(s)	104, 143, 590, 591
BcoDI	GTCTC	3 cut(s)	515, 559, 853
BfaI	CTAG	2 cut(s)	842, 1088
BfoI	RGCGCY	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	690
BglI	GCCNNNNNGGC	1 cut(s)	270
BglII	AGATCT	2 cut(s)	243, 474
Bme1390I	CCNGG	6 cut(s)	104, 143, 173, 590, 591, 667
Bme18I	GGWCC	4 cut(s)	175, 286, 466, 639
BmeRI	GACNNNNNGTC	1 cut(s)	382
BmeT110I	CYCGRG	2 cut(s)	589, 850
BmgBI	CACGTC	1 cut(s)	562
BmgT120I	GGNCC	9 cut(s)	145, 175, 263, 286, 332, 466, 566, 639, 655
BmiI	GGNNCC	5 cut(s)	199, 274, 334, 596, 901
BmrFI	CCNGG	6 cut(s)	104, 143, 173, 590, 591, 667
BmsI	GCATC	4 cut(s)	225, 282, 402, 459
BmtI	GCTAGC	1 cut(s)	845
BpmI	CTGGAG	1 cut(s)	581
BpuMI	CCSGG	4 cut(s)	104, 143, 590, 591
BsaHI	GRCGYC	1 cut(s)	273
BsaI	GGTCTC	2 cut(s)	515, 559
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 109, 113, 139
Bsc4I	CCNNNNNNNGG	4 cut(s)	358, 418, 574, 1133
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	382, 930
Bse21I	CCTNAGG	1 cut(s)	570
Bse3DI	GCAATG	1 cut(s)	764
BseBI	CCWGG	2 cut(s)	173, 667
BseGI	GGATG	4 cut(s)	309, 763, 940, 1102
BseLI	CCNNNNNNNGG	4 cut(s)	358, 418, 574, 1133
BseMI	GCAATG	1 cut(s)	764
BseMII	CTCAG	3 cut(s)	584, 1014, 1163
BseNI	ACTGG	2 cut(s)	382, 930
BseRI	GAGGAG	4 cut(s)	143, 801, 927, 1152
BseXI	GCAGC	4 cut(s)	170, 290, 377, 756
BseYI	CCCAGC	1 cut(s)	147
Bsh1236I	CGCG	5 cut(s)	14, 240, 255, 270, 444
Bsh1285I	CGRYCG	1 cut(s)	448
BshFI	GGCC	8 cut(s)	65, 146, 264, 333, 567, 656, 674, 1062
BshNI	GGYRCC	2 cut(s)	197, 272
BsiEI	CGRYCG	1 cut(s)	448
BsiHKAI	GWGCWC	2 cut(s)	405, 582
BsiHKCI	CYCGRG	2 cut(s)	589, 850
BsiSI	CCGG	4 cut(s)	104, 143, 195, 590
BslFI	GGGAC	6 cut(s)	35, 81, 370, 386, 555, 742
BslI	CCNNNNNNNGG	4 cut(s)	358, 418, 574, 1133
BsmAI	GTCTC	3 cut(s)	515, 559, 853
BsmFI	GGGAC	6 cut(s)	35, 81, 370, 386, 555, 742
BsnI	GGCC	8 cut(s)	65, 146, 264, 333, 567, 656, 674, 1062
Bso31I	GGTCTC	2 cut(s)	515, 559
BsoBI	CYCGRG	2 cut(s)	589, 850
Bsp1286I	GDGCHC	3 cut(s)	405, 582, 597
Bsp143I	GATC	5 cut(s)	243, 366, 474, 735, 899
BspANI	GGCC	8 cut(s)	65, 146, 264, 333, 567, 656, 674, 1062
BspCNI	CTCAG	3 cut(s)	583, 1013, 1162
BspFNI	CGCG	5 cut(s)	14, 240, 255, 270, 444
BspHI	TCATGA	2 cut(s)	363, 969
BspLI	GGNNCC	5 cut(s)	199, 274, 334, 596, 901
BspMI	ACCTGC	1 cut(s)	690
BspOI	GCTAGC	1 cut(s)	845
BspPI	GGATC	2 cut(s)	894, 907
BspQI	GCTCTTC	1 cut(s)	302
BspT107I	GGYRCC	2 cut(s)	197, 272
BspTNI	GGTCTC	2 cut(s)	515, 559
BsrBI	CCGCTC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	764
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	382, 930
BssAI	RCCGGY	1 cut(s)	194
BssMI	GATC	5 cut(s)	243, 366, 474, 735, 899
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	3 cut(s)	537, 903, 986
Bst2UI	CCWGG	2 cut(s)	173, 667
Bst4CI	ACNGT	2 cut(s)	95, 1078
Bst6I	CTCTTC	2 cut(s)	141, 302
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	7 cut(s)	196, 401, 672, 676, 708, 718, 843
BstDEI	CTNAG	3 cut(s)	570, 1000, 1149
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	4 cut(s)	309, 763, 940, 1102
BstFNI	CGCG	5 cut(s)	14, 240, 255, 270, 444
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	2 cut(s)	77, 275
BstKTI	GATC	5 cut(s)	246, 369, 477, 738, 902
BstMAI	GTCTC	3 cut(s)	515, 559, 853
BstMBI	GATC	5 cut(s)	243, 366, 474, 735, 899
BstMCI	CGRYCG	1 cut(s)	448
BstMWI	GCNNNNNNNGC	7 cut(s)	261, 270, 396, 447, 680, 797, 824
BstNI	CCWGG	2 cut(s)	173, 667
BstSCI	CCNGG	6 cut(s)	102, 141, 171, 588, 589, 665
BstUI	CGCG	5 cut(s)	14, 240, 255, 270, 444
BstV1I	GCAGC	4 cut(s)	170, 290, 377, 756
BstX2I	RGATCY	3 cut(s)	243, 474, 899
BstYI	RGATCY	3 cut(s)	243, 474, 899
Bsu36I	CCTNAGG	1 cut(s)	570
BsuRI	GGCC	8 cut(s)	65, 146, 264, 333, 567, 656, 674, 1062
BtgI	CCRYGG	1 cut(s)	178
BtgZI	GCGATG	1 cut(s)	511
BtrI	CACGTC	1 cut(s)	562
BtsCI	GGATG	4 cut(s)	309, 763, 940, 1102
BtsIMutI	CAGTG	2 cut(s)	1017, 1074
BveI	ACCTGC	1 cut(s)	690
Cac8I	GCNNGC	7 cut(s)	196, 401, 672, 676, 708, 718, 843
CciI	TCATGA	2 cut(s)	363, 969
CfoI	GCGC	2 cut(s)	77, 275
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	9 cut(s)	145, 175, 263, 286, 332, 466, 566, 639, 655
Cfr9I	CCCGGG	1 cut(s)	589
Csp6I	GTAC	1 cut(s)	1045
CviAII	CATG	4 cut(s)	364, 872, 970, 1093
CviQI	GTAC	1 cut(s)	1045
DdeI	CTNAG	3 cut(s)	570, 1000, 1149
DinI	GGCGCC	1 cut(s)	274
DpnI	GATC	5 cut(s)	245, 368, 476, 737, 901
DpnII	GATC	5 cut(s)	243, 366, 474, 735, 899
DrdI	GACNNNNNNGTC	1 cut(s)	452
DriI	GACNNNNNGTC	1 cut(s)	382
DseDI	GACNNNNNNGTC	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	1060
Eam1104I	CTCTTC	2 cut(s)	141, 302
Eam1105I	GACNNNNNGTC	1 cut(s)	382
EarI	CTCTTC	2 cut(s)	141, 302
EciI	GGCGGA	2 cut(s)	239, 428
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	3 cut(s)	537, 903, 986
Eco24I	GRGCYC	2 cut(s)	405, 597
Eco31I	GGTCTC	2 cut(s)	515, 559
Eco47I	GGWCC	4 cut(s)	175, 286, 466, 639
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	905
Eco81I	CCTNAGG	1 cut(s)	570
Eco88I	CYCGRG	2 cut(s)	589, 850
EcoICRI	GAGCTC	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	171, 665
EcoT14I	CCWWGG	3 cut(s)	537, 903, 986
EcoT38I	GRGCYC	2 cut(s)	405, 597
EgeI	GGCGCC	1 cut(s)	274
EheI	GGCGCC	1 cut(s)	274
ErhI	CCWWGG	3 cut(s)	537, 903, 986
FaeI	CATG	4 cut(s)	367, 875, 973, 1096
FaiI	YATR	8 cut(s)	365, 653, 810, 873, 912, 971, 1094, 1164
FaqI	GGGAC	6 cut(s)	35, 81, 370, 386, 555, 742
FatI	CATG	4 cut(s)	363, 871, 969, 1092
FauI	CCCGC	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	735
FblI	GTMKAC	1 cut(s)	483
FokI	GGATG	4 cut(s)	296, 770, 927, 1109
FriOI	GRGCYC	2 cut(s)	405, 597
FspBI	CTAG	2 cut(s)	842, 1088
GlaI	GCGC	2 cut(s)	76, 274
GsaI	CCCAGC	1 cut(s)	151
GsuI	CTGGAG	1 cut(s)	581
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	8 cut(s)	65, 146, 264, 333, 567, 656, 674, 1062
HapII	CCGG	4 cut(s)	104, 143, 195, 590
HhaI	GCGC	2 cut(s)	77, 275
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	4 cut(s)	367, 875, 973, 1096
Hin6I	GCGC	2 cut(s)	75, 273
HinP1I	GCGC	2 cut(s)	75, 273
HindIII	AAGCTT	2 cut(s)	503, 1102
HinfI	GANTC	8 cut(s)	86, 118, 124, 543, 662, 893, 926, 1147
HpaII	CCGG	4 cut(s)	104, 143, 195, 590
HphI	GGTGA	2 cut(s)	21, 307
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	8 cut(s)	70, 123, 418, 740, 885, 925, 1003, 1193
Hpy188III	TCNNGA	9 cut(s)	289, 364, 469, 598, 755, 850, 897, 970, 1171
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	6 cut(s)	86, 281, 326, 458, 461, 566
HpyAV	CCTTC	4 cut(s)	244, 418, 880, 1028
HpyCH4III	ACNGT	2 cut(s)	95, 1078
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	4 cut(s)	306, 393, 772, 1030
HpyF10VI	GCNNNNNNNGC	7 cut(s)	261, 270, 396, 447, 680, 797, 824
HpyF3I	CTNAG	3 cut(s)	570, 1000, 1149
HpySE526I	ACGT	1 cut(s)	561
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	4 cut(s)	367, 875, 973, 1096
HspAI	GCGC	2 cut(s)	75, 273
KasI	GGCGCC	1 cut(s)	272
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	735
Kzo9I	GATC	5 cut(s)	243, 366, 474, 735, 899
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	5 cut(s)	156, 419, 441, 600, 788
Lsp1109I	GCAGC	4 cut(s)	170, 290, 377, 756
LweI	GCATC	4 cut(s)	225, 282, 402, 459
MaeI	CTAG	2 cut(s)	842, 1088
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	1 cut(s)	854
MalI	GATC	5 cut(s)	245, 368, 476, 737, 901
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	5 cut(s)	243, 366, 474, 735, 899
MboII	GAAGA	7 cut(s)	128, 238, 289, 469, 484, 1081, 1193
MflI	RGATCY	3 cut(s)	243, 474, 899
MhlI	GDGCHC	3 cut(s)	405, 582, 597
MlsI	TGGCCA	1 cut(s)	1062
MluCI	AATT	7 cut(s)	41, 129, 487, 609, 1019, 1118, 1165
MluNI	TGGCCA	1 cut(s)	1062
Mly113I	GGCGCC	1 cut(s)	273
MlyI	GAGTC	5 cut(s)	80, 112, 118, 537, 1141
MmeI	TCCRAC	2 cut(s)	93, 146
Mox20I	TGGCCA	1 cut(s)	1062
MroNI	GCCGGC	1 cut(s)	194
MroXI	GAANNNNTTC	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	1062
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	1079
Msp20I	TGGCCA	1 cut(s)	1062
MspA1I	CMGCKG	2 cut(s)	303, 390
MspI	CCGG	4 cut(s)	104, 143, 195, 590
MspR9I	CCNGG	6 cut(s)	104, 143, 173, 590, 591, 667
MvaI	CCWGG	2 cut(s)	173, 667
MvnI	CGCG	5 cut(s)	14, 240, 255, 270, 444
MwoI	GCNNNNNNNGC	7 cut(s)	261, 270, 396, 447, 680, 797, 824
NaeI	GCCGGC	1 cut(s)	196
NarI	GGCGCC	1 cut(s)	273
NciI	CCSGG	4 cut(s)	104, 143, 590, 591
NdeII	GATC	5 cut(s)	243, 366, 474, 735, 899
NgoMIV	GCCGGC	1 cut(s)	194
NheI	GCTAGC	1 cut(s)	841
NlaIII	CATG	4 cut(s)	367, 875, 973, 1096
NlaIV	GGNNCC	5 cut(s)	199, 274, 334, 596, 901
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	854
OliI	CACNNNNGTG	1 cut(s)	1079
PaeR7I	CTCGAG	1 cut(s)	850
PagI	TCATGA	2 cut(s)	363, 969
PciSI	GCTCTTC	1 cut(s)	302
PdiI	GCCGGC	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	3 cut(s)	662, 893, 926
PflFI	GACNNNGTC	1 cut(s)	1127
PleI	GAGTC	5 cut(s)	80, 112, 118, 537, 1141
PluTI	GGCGCC	1 cut(s)	276
PpsI	GAGTC	5 cut(s)	80, 112, 118, 537, 1141
PsiI	TTATAA	1 cut(s)	1164
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	171, 665
PspFI	CCCAGC	1 cut(s)	147
PspGI	CCWGG	2 cut(s)	171, 665
PspN4I	GGNNCC	5 cut(s)	199, 274, 334, 596, 901
PspPI	GGNCC	9 cut(s)	145, 175, 263, 286, 332, 466, 566, 639, 655
PsuI	RGATCY	3 cut(s)	243, 474, 899
PsyI	GACNNNGTC	1 cut(s)	1127
RsaI	GTAC	1 cut(s)	1046
RsaNI	GTAC	1 cut(s)	1045
RseI	CAYNNNNRTG	1 cut(s)	1079
SacI	GAGCTC	1 cut(s)	405
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	59
Sau3AI	GATC	5 cut(s)	243, 366, 474, 735, 899
Sau96I	GGNCC	9 cut(s)	145, 175, 263, 286, 332, 466, 566, 639, 655
SchI	GAGTC	5 cut(s)	80, 112, 118, 537, 1141
ScrFI	CCNGG	6 cut(s)	104, 143, 173, 590, 591, 667
SduI	GDGCHC	3 cut(s)	405, 582, 597
SfaNI	GCATC	4 cut(s)	225, 282, 402, 459
SfoI	GGCGCC	1 cut(s)	274
Sfr274I	CTCGAG	1 cut(s)	850
SinI	GGWCC	4 cut(s)	175, 286, 466, 639
SlaI	CTCGAG	1 cut(s)	850
SmaI	CCCGGG	1 cut(s)	591
SmiMI	CAYNNNNRTG	1 cut(s)	1079
SmlI	CTYRAG	1 cut(s)	850
SmoI	CTYRAG	1 cut(s)	850
Sse9I	AATT	7 cut(s)	41, 129, 487, 609, 1019, 1118, 1165
SspDI	GGCGCC	1 cut(s)	272
SspI	AATATT	1 cut(s)	1160
SspMI	CTAG	2 cut(s)	842, 1088
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	6 cut(s)	102, 141, 171, 588, 589, 665
StyI	CCWWGG	3 cut(s)	537, 903, 986
TaaI	ACNGT	2 cut(s)	95, 1078
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	3 cut(s)	618, 632, 851
TasI	AATT	7 cut(s)	41, 129, 487, 609, 1019, 1118, 1165
TatI	WGTACW	1 cut(s)	1044
TauI	GCSGC	6 cut(s)	194, 255, 273, 330, 333, 444
TfiI	GAWTC	3 cut(s)	662, 893, 926
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	2 cut(s)	1017, 1081
TseFI	GTSAC	1 cut(s)	854
TseI	GCWGC	4 cut(s)	183, 303, 390, 769
Tsp45I	GTSAC	1 cut(s)	854
TspDTI	ATGAA	4 cut(s)	753, 945, 958, 986
TspMI	CCCGGG	1 cut(s)	589
TspRI	CASTG	2 cut(s)	1017, 1081
Tth111I	GACNNNGTC	1 cut(s)	1127
VpaK11BI	GGWCC	4 cut(s)	175, 286, 466, 639
XapI	RAATTY	3 cut(s)	609, 1019, 1118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XhoI	CTCGAG	1 cut(s)	850
XmaI	CCCGGG	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	2 cut(s)	842, 1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.