Rh3CG067600

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001367
Physical Location & Seq
Forward (+)
4667896 .. 4671226
3331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG067600.1

Sequence Viewer

Length: 1071 bp
ATGGCCACCGTCTCCTCCCGTCCTTTTCAGTTTCCGGTCCCGAAAATCGACCCCGAACCCAAAGACTCCGACCCCGACCCGACCCGACTCCCCACCATCTTCAACCTCTCCTTCAACCAGGACCACGCCTGCTTCGCCGTCGGCACCGACTTCGGCTTCCGCGTTTACAAGTGCGACCCCTTCGCCATCACCATCCACCGCGACTTCTTCACAGGCGGCGGCTTCGGATTGGTCCGGATACTCAACACCTCCCAAATCTTCGCCATAGTCGGAGGCGGACCCGACCCGGTCTCCCCGGCCAACAGGGTCATGATCTGGGACGACCACAAGTCCCTCCCCATCCACGACATGTCGTTTCGCTCTGAGGTCCGGGGGCTCAAGCTCCGGAGCGATCGACTCGTCGTCGTTTTGAACCAGAAGATCGTCGTCCACAGCTTCCCTAATTCGAAGCCTCTGCACGAGATTTTGACCACGGAGAACCCTAAGGGGCTGTGCGAGGTGTCGCAGAGTCCGGGTCCGATGGTGCTGGCGTGTCCGGGGCTCCATAAAGGTCAAATTCGGGTCGAGAATTACGCTTTGAAGCGGACCAAGTTCATAATGGCCCACGATTCCAGTCTCGCCTGCTTTGGGCTCACTCCGGACGGCCGGTATTTGGCTACGGCGAGCAGCAAGGGGACTCTAGTTAGAGTTTTCAGTACTTCAGATGGTACATTACTCCAAGAGGTGAGGAGAGGAGCAGACAGAGCAGAGATTTACAGTCTTGCTTTCTCTTGTACTGGCCAATGGCTAGCTGTGTCTAGTGACAAGGGAACTGTGCATGTTTTCAGTGTAAAGGTTGGTTCAGGATCCATGGAAAAGGATAGATCACGCGGTACATCAGAAGGCGGTGTTCCTAATCCATCAGGCATTTCATCTCTGTCTTTCATCAAAGGTGTGCTGCCAAGGTATTTCAGCTCAGAATGGTCGGTGGCCAAATTTCATTTGCAGGAAGGTCTGCAGCATATTGTTGCCTTTGGCAAGCGGAAGAACACCATCATGATTGTTGGCATGGATGGAAGGTACCCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

356

Amino Acids

39.06

Weight (kDa)

9.35

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PROPPIN PF21032 36 - 283 2e-28 PROPPIN
Beta-prop_THOC3 PF25174 101 - 281 2.4e-14 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 185 - 279 3.4e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 201 - 280 7.7e-08 WDR5 beta-propeller domain
WD40_Prp19 PF24814 202 - 276 6.8e-06 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1059
AccB1I GGYRCC 2 cut(s) 143, 1059
AccII CGCG 3 cut(s) 162, 201, 870
AccIII TCCGGA 3 cut(s) 234, 384, 637
AciI CCGC 9 cut(s) 160, 199, 216, 219, 276, 583, 870, 885, 1021
AclWI GGATC 2 cut(s) 840, 853
AcoI YGGCCR 5 cut(s) 3, 297, 643, 778, 969
AcsI RAATTY 2 cut(s) 555, 974
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 5 cut(s) 697, 709, 775, 874, 1061
AfiI CCNNNNNNNGG 2 cut(s) 627, 652
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 4 cut(s) 103, 115, 412, 580
AhdI GACNNNNNGTC 2 cut(s) 328, 401
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 4 cut(s) 382, 435, 791, 954
AluI AGCT 4 cut(s) 382, 435, 791, 954
Alw26I GTCTC 3 cut(s) 16, 295, 620
AlwI GGATC 2 cut(s) 840, 853
Aor13HI TCCGGA 3 cut(s) 234, 384, 637
AoxI GGCC 6 cut(s) 3, 297, 600, 643, 778, 969
ApeKI GCWGC 3 cut(s) 666, 937, 997
ApoI RAATTY 2 cut(s) 555, 974
Asp718I GGTACC 1 cut(s) 1059
AspS9I GGNCC 8 cut(s) 37, 121, 232, 278, 367, 515, 585, 601
AsuC2I CCSGG 5 cut(s) 287, 296, 371, 513, 537
AsuHPI GGTGA 2 cut(s) 181, 736
AsuII TTCGAA 1 cut(s) 446
AsuNHI GCTAGC 1 cut(s) 787
AvaII GGWCC 7 cut(s) 37, 121, 232, 278, 367, 515, 585
AxyI CCTNAGG 1 cut(s) 483
BalI TGGCCA 3 cut(s) 5, 780, 971
BamHI GGATCC 1 cut(s) 845
BanI GGYRCC 2 cut(s) 143, 1059
BanII GRGCYC 3 cut(s) 378, 543, 633
BauI CACGAG 1 cut(s) 458
BbvI GCAGC 3 cut(s) 678, 924, 1009
BccI CCATC 9 cut(s) 104, 194, 200, 347, 514, 698, 907, 1040, 1046
BceAI ACGGC 3 cut(s) 122, 658, 675
BcgI CGANNNNNNTGC 4 cut(s) 133, 167, 436, 470
BciT130I CCWGG 1 cut(s) 119
BciVI GTATCC 1 cut(s) 231
BcnI CCSGG 5 cut(s) 287, 296, 371, 513, 537
BcoDI GTCTC 3 cut(s) 16, 295, 620
BfaI CTAG 3 cut(s) 680, 788, 798
BfmI CTRYAG 1 cut(s) 995
BfuI GTATCC 1 cut(s) 231
BisI GCNGC 5 cut(s) 217, 220, 667, 938, 998
BlsI GCNGC 5 cut(s) 218, 221, 668, 939, 999
BmcAI AGTACT 1 cut(s) 697
Bme1390I CCNGG 6 cut(s) 119, 287, 296, 371, 513, 537
Bme18I GGWCC 7 cut(s) 37, 121, 232, 278, 367, 515, 585
BmeRI GACNNNNNGTC 2 cut(s) 328, 401
BmgT120I GGNCC 8 cut(s) 37, 121, 232, 278, 367, 515, 585, 601
BmiI GGNNCC 7 cut(s) 39, 145, 280, 516, 542, 847, 1061
BmrFI CCNGG 6 cut(s) 119, 287, 296, 371, 513, 537
BmtI GCTAGC 1 cut(s) 791
Bpu14I TTCGAA 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 5 cut(s) 287, 296, 371, 513, 537
BsaI GGTCTC 1 cut(s) 295
BsaJI CCNNGG 6 cut(s) 294, 370, 471, 536, 849, 941
BsaWI WCCGGW 4 cut(s) 34, 234, 384, 637
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 627, 652
Bse118I RCCGGY 1 cut(s) 645
Bse1I ACTGG 2 cut(s) 612, 781
Bse21I CCTNAGG 1 cut(s) 483
BseAI TCCGGA 3 cut(s) 234, 384, 637
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 6 cut(s) 294, 370, 471, 536, 849, 941
BseGI GGATG 3 cut(s) 192, 339, 1057
BseLI CCNNNNNNNGG 2 cut(s) 627, 652
BseMII CTCAG 2 cut(s) 354, 969
BseNI ACTGG 2 cut(s) 612, 781
BseRI GAGGAG 3 cut(s) 4, 742, 747
BseX3I CGGCCG 1 cut(s) 643
BseXI GCAGC 3 cut(s) 678, 924, 1009
BsgI GTGCAG 1 cut(s) 440
Bsh1236I CGCG 3 cut(s) 162, 201, 870
Bsh1285I CGRYCG 2 cut(s) 394, 646
BshFI GGCC 6 cut(s) 5, 299, 602, 645, 780, 971
BshNI GGYRCC 2 cut(s) 143, 1059
BsiEI CGRYCG 2 cut(s) 394, 646
BslFI GGGAC 4 cut(s) 23, 316, 332, 688
BslI CCNNNNNNNGG 2 cut(s) 627, 652
BsmAI GTCTC 3 cut(s) 16, 295, 620
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 4 cut(s) 23, 316, 332, 688
BsnI GGCC 6 cut(s) 5, 299, 602, 645, 780, 971
Bso31I GGTCTC 1 cut(s) 295
Bsp119I TTCGAA 1 cut(s) 446
Bsp1286I GDGCHC 3 cut(s) 378, 543, 633
Bsp13I TCCGGA 3 cut(s) 234, 384, 637
Bsp143I GATC 5 cut(s) 312, 391, 420, 845, 863
Bsp19I CCATGG 1 cut(s) 849
BspACI CCGC 9 cut(s) 160, 199, 216, 219, 276, 583, 870, 885, 1021
BspANI GGCC 6 cut(s) 5, 299, 602, 645, 780, 971
BspCNI CTCAG 2 cut(s) 355, 968
BspEI TCCGGA 3 cut(s) 234, 384, 637
BspFNI CGCG 3 cut(s) 162, 201, 870
BspHI TCATGA 2 cut(s) 309, 1035
BspLI GGNNCC 7 cut(s) 39, 145, 280, 516, 542, 847, 1061
BspMAI CTGCAG 1 cut(s) 999
BspOI GCTAGC 1 cut(s) 791
BspPI GGATC 2 cut(s) 840, 853
BspT104I TTCGAA 1 cut(s) 446
BspT107I GGYRCC 2 cut(s) 143, 1059
BspTNI GGTCTC 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 645
BsrI ACTGG 2 cut(s) 612, 781
BssAI RCCGGY 1 cut(s) 645
BssECI CCNNGG 6 cut(s) 294, 370, 471, 536, 849, 941
BssMI GATC 5 cut(s) 312, 391, 420, 845, 863
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 2 cut(s) 849, 941
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 3 cut(s) 10, 758, 814
BstBI TTCGAA 1 cut(s) 446
BstC8I GCNNGC 6 cut(s) 130, 528, 622, 664, 789, 1019
BstDEI CTNAG 3 cut(s) 363, 483, 955
BstDSI CCRYGG 2 cut(s) 471, 849
BstF5I GGATG 3 cut(s) 192, 339, 1057
BstFNI CGCG 3 cut(s) 162, 201, 870
BstKTI GATC 5 cut(s) 315, 394, 423, 848, 866
BstMAI GTCTC 3 cut(s) 16, 295, 620
BstMBI GATC 5 cut(s) 312, 391, 420, 845, 863
BstMCI CGRYCG 2 cut(s) 394, 646
BstMWI GCNNNNNNNGC 2 cut(s) 134, 743
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 2 cut(s) 352, 821
BstSCI CCNGG 6 cut(s) 117, 285, 294, 369, 511, 535
BstSFI CTRYAG 1 cut(s) 995
BstUI CGCG 3 cut(s) 162, 201, 870
BstV1I GCAGC 3 cut(s) 678, 924, 1009
BstX2I RGATCY 1 cut(s) 845
BstYI RGATCY 1 cut(s) 845
BstZI CGGCCG 1 cut(s) 643
Bsu36I CCTNAGG 1 cut(s) 483
BsuI GTATCC 1 cut(s) 231
BsuRI GGCC 6 cut(s) 5, 299, 602, 645, 780, 971
BtgI CCRYGG 2 cut(s) 471, 849
BtsCI GGATG 3 cut(s) 192, 339, 1057
BtsIMutI CAGTG 1 cut(s) 832
Cac8I GCNNGC 6 cut(s) 130, 528, 622, 664, 789, 1019
CciI TCATGA 2 cut(s) 309, 1035
Cfr10I RCCGGY 1 cut(s) 645
Cfr13I GGNCC 8 cut(s) 37, 121, 232, 278, 367, 515, 585, 601
Csp6I GTAC 5 cut(s) 696, 708, 774, 873, 1060
CviAII CATG 6 cut(s) 310, 349, 818, 850, 1036, 1048
CviQI GTAC 5 cut(s) 696, 708, 774, 873, 1060
DdeI CTNAG 3 cut(s) 363, 483, 955
DpnI GATC 5 cut(s) 314, 393, 422, 847, 865
DpnII GATC 5 cut(s) 312, 391, 420, 845, 863
DriI GACNNNNNGTC 2 cut(s) 328, 401
EaeI YGGCCR 5 cut(s) 3, 297, 643, 778, 969
EagI CGGCCG 1 cut(s) 643
Eam1105I GACNNNNNGTC 2 cut(s) 328, 401
EciI GGCGGA 1 cut(s) 291
EclXI CGGCCG 1 cut(s) 643
Eco130I CCWWGG 2 cut(s) 849, 941
Eco24I GRGCYC 3 cut(s) 378, 543, 633
Eco31I GGTCTC 1 cut(s) 295
Eco47I GGWCC 7 cut(s) 37, 121, 232, 278, 367, 515, 585
Eco52I CGGCCG 1 cut(s) 643
Eco57I CTGAAG 1 cut(s) 684
Eco81I CCTNAGG 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 849, 941
EcoT38I GRGCYC 3 cut(s) 378, 543, 633
ErhI CCWWGG 2 cut(s) 849, 941
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 6 cut(s) 313, 352, 821, 853, 1039, 1051
FaqI GGGAC 4 cut(s) 23, 316, 332, 688
FatI CATG 6 cut(s) 309, 348, 817, 849, 1035, 1047
Fnu4HI GCNGC 5 cut(s) 217, 220, 667, 938, 998
FokI GGATG 3 cut(s) 179, 326, 1064
FriOI GRGCYC 3 cut(s) 378, 543, 633
Fsp4HI GCNGC 5 cut(s) 217, 220, 667, 938, 998
FspBI CTAG 3 cut(s) 680, 788, 798
GluI GCNGC 5 cut(s) 217, 220, 667, 938, 998
HaeIII GGCC 6 cut(s) 5, 299, 602, 645, 780, 971
Hin1II CATG 6 cut(s) 313, 352, 821, 853, 1039, 1051
HinfI GANTC 6 cut(s) 65, 87, 396, 508, 608, 676
HphI GGTGA 2 cut(s) 181, 736
Hpy166II GTNNAC 2 cut(s) 166, 430
Hpy188I TCNGA 8 cut(s) 70, 227, 272, 364, 519, 703, 880, 958
Hpy188III TCNNGA 8 cut(s) 40, 235, 310, 385, 565, 638, 843, 1036
Hpy8I GTNNAC 2 cut(s) 166, 430
Hpy99I CGWCG 4 cut(s) 143, 404, 407, 428
HpyAV CCTTC 5 cut(s) 121, 190, 875, 983, 1050
HpyCH4III ACNGT 3 cut(s) 10, 758, 814
HpyCH4V TGCA 4 cut(s) 457, 817, 985, 997
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 743
HpyF3I CTNAG 3 cut(s) 363, 483, 955
Hsp92II CATG 6 cut(s) 313, 352, 821, 853, 1039, 1051
Kpn2I TCCGGA 3 cut(s) 234, 384, 637
KpnI GGTACC 1 cut(s) 1063
Kzo9I GATC 5 cut(s) 312, 391, 420, 845, 863
LmnI GCTCC 4 cut(s) 387, 387, 546, 734
Lsp1109I GCAGC 3 cut(s) 678, 924, 1009
MaeI CTAG 3 cut(s) 680, 788, 798
MaeIII GTNAC 1 cut(s) 800
MalI GATC 5 cut(s) 314, 393, 422, 847, 865
MboI GATC 5 cut(s) 312, 391, 420, 845, 863
MboII GAAGA 5 cut(s) 91, 199, 250, 430, 1036
MflI RGATCY 1 cut(s) 845
MhlI GDGCHC 3 cut(s) 378, 543, 633
MlsI TGGCCA 3 cut(s) 5, 780, 971
MluCI AATT 4 cut(s) 442, 555, 568, 974
MluNI TGGCCA 3 cut(s) 5, 780, 971
MlyI GAGTC 5 cut(s) 59, 81, 390, 517, 670
MmeI TCCRAC 2 cut(s) 93, 250
Mox20I TGGCCA 3 cut(s) 5, 780, 971
MroI TCCGGA 3 cut(s) 234, 384, 637
MscI TGGCCA 3 cut(s) 5, 780, 971
MslI CAYNNNNRTG 1 cut(s) 1034
Msp20I TGGCCA 3 cut(s) 5, 780, 971
MspR9I CCNGG 6 cut(s) 119, 287, 296, 371, 513, 537
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 3 cut(s) 162, 201, 870
MwoI GCNNNNNNNGC 2 cut(s) 134, 743
NciI CCSGG 5 cut(s) 287, 296, 371, 513, 537
NcoI CCATGG 1 cut(s) 849
NdeII GATC 5 cut(s) 312, 391, 420, 845, 863
NheI GCTAGC 1 cut(s) 787
NlaIII CATG 6 cut(s) 313, 352, 821, 853, 1039, 1051
NlaIV GGNNCC 7 cut(s) 39, 145, 280, 516, 542, 847, 1061
NmuCI GTSAC 1 cut(s) 800
NspI RCATGY 2 cut(s) 352, 821
NspV TTCGAA 1 cut(s) 446
PagI TCATGA 2 cut(s) 309, 1035
PciI ACATGT 1 cut(s) 348
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 1 cut(s) 608
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 5 cut(s) 218, 221, 668, 939, 999
Ple19I CGATCG 1 cut(s) 394
PleI GAGTC 5 cut(s) 59, 81, 390, 516, 670
PpsI GAGTC 5 cut(s) 59, 81, 390, 516, 670
PscI ACATGT 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 7 cut(s) 39, 145, 280, 516, 542, 847, 1061
PspPI GGNCC 8 cut(s) 37, 121, 232, 278, 367, 515, 585, 601
PstI CTGCAG 1 cut(s) 999
PsuI RGATCY 1 cut(s) 845
PsyI GACNNNGTC 1 cut(s) 287
PvuI CGATCG 1 cut(s) 394
RsaI GTAC 5 cut(s) 697, 709, 775, 874, 1061
RsaNI GTAC 5 cut(s) 696, 708, 774, 873, 1060
RseI CAYNNNNRTG 1 cut(s) 1034
SatI GCNGC 5 cut(s) 217, 220, 667, 938, 998
Sau3AI GATC 5 cut(s) 312, 391, 420, 845, 863
Sau96I GGNCC 8 cut(s) 37, 121, 232, 278, 367, 515, 585, 601
ScaI AGTACT 1 cut(s) 697
SchI GAGTC 5 cut(s) 59, 81, 390, 517, 670
ScrFI CCNGG 6 cut(s) 119, 287, 296, 371, 513, 537
SduI GDGCHC 3 cut(s) 378, 543, 633
SfcI CTRYAG 1 cut(s) 995
SfuI TTCGAA 1 cut(s) 446
SinI GGWCC 7 cut(s) 37, 121, 232, 278, 367, 515, 585
SmiMI CAYNNNNRTG 1 cut(s) 1034
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 4 cut(s) 442, 555, 568, 974
SsiI CCGC 9 cut(s) 160, 199, 216, 219, 276, 583, 870, 885, 1021
SspMI CTAG 3 cut(s) 680, 788, 798
StyD4I CCNGG 6 cut(s) 117, 285, 294, 369, 511, 535
StyI CCWWGG 2 cut(s) 849, 941
TaaI ACNGT 3 cut(s) 10, 758, 814
TaqI TCGA 4 cut(s) 48, 394, 446, 564
TasI AATT 4 cut(s) 442, 555, 568, 974
TatI WGTACW 2 cut(s) 695, 773
TauI GCSGC 2 cut(s) 219, 222
TfiI GAWTC 1 cut(s) 608
TscAI CASTG 1 cut(s) 832
TseFI GTSAC 1 cut(s) 800
TseI GCWGC 3 cut(s) 666, 937, 997
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 4 cut(s) 583, 900, 913, 968
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 1 cut(s) 832
Tth111I GACNNNGTC 1 cut(s) 287
VpaK11BI GGWCC 7 cut(s) 37, 121, 232, 278, 367, 515, 585
XapI RAATTY 2 cut(s) 555, 974
XceI RCATGY 2 cut(s) 352, 821
XcmI CCANNNNNNNNNTGG 1 cut(s) 595
XspI CTAG 3 cut(s) 680, 788, 798
ZrmI AGTACT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.