Rh5BG179700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001367
Physical Location & Seq
Forward (+)
19597738 .. 19599689
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG179700.1

Sequence Viewer

Length: 309 bp
ATGAGGGATTTGACCACCAAGAGAAGCAGCAGAGAGGTCAAGGACGACCATGTCCTTGGTGAATCTGGTGTCGCGTATGGATTTGTCGACCACTCGGACGCCCAACAGAAACTCGTTGCCGTGCAGCAGCGTGACGTAAGCCTCCGTCGTAGGTCAGGGACTCAAGCTCCGATGCGAGTTGTTGTTTTGAACCAGAAGATCATCGTCCACAGCTTCCCTAATTTGAAGCCTCTGCACGAGATTTTGGTACTGTATGCTTGGTACTCAGATCTTGATTTGTTCATATGTTGTAAAGAATCACAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.7

Weight (kDa)

8.66

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 87
AccII CGCG 1 cut(s) 74
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 2 cut(s) 249, 263
AgsI TTSAA 2 cut(s) 190, 226
AleI CACNNNNGTG 1 cut(s) 304
AluBI AGCT 2 cut(s) 167, 213
AluI AGCT 2 cut(s) 167, 213
ApeKI GCWGC 3 cut(s) 27, 124, 127
AsuHPI GGTGA 1 cut(s) 71
BauI CACGAG 1 cut(s) 236
BbvI GCAGC 3 cut(s) 39, 136, 139
BceAI ACGGC 1 cut(s) 104
BglII AGATCT 1 cut(s) 268
BisI GCNGC 3 cut(s) 28, 125, 128
BlsI GCNGC 3 cut(s) 29, 126, 129
BmsI GCATC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
BseDI CCNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 39, 136, 139
BsgI GTGCAG 2 cut(s) 143, 218
Bsh1236I CGCG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 198, 268
BspCNI CTCAG 1 cut(s) 278
BspFNI CGCG 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 2 cut(s) 198, 268
BssNI GRCGYC 1 cut(s) 99
BssSI CACGAG 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 74
BstKTI GATC 2 cut(s) 201, 271
BstMBI GATC 2 cut(s) 198, 268
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 3 cut(s) 39, 136, 139
BstX2I RGATCY 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 56
BstYI RGATCY 1 cut(s) 268
CseI GACGC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 248, 262
CviAII CATG 1 cut(s) 50
CviJI RGCY 4 cut(s) 141, 167, 213, 229
CviKI_1 RGCY 4 cut(s) 141, 167, 213, 229
CviQI GTAC 2 cut(s) 248, 262
DdeI CTNAG 1 cut(s) 265
DpnI GATC 2 cut(s) 200, 270
DpnII GATC 2 cut(s) 198, 268
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 1 cut(s) 53
FaiI YATR 5 cut(s) 51, 78, 255, 284, 286
FaqI GGGAC 1 cut(s) 172
FatI CATG 1 cut(s) 49
FauNDI CATATG 1 cut(s) 284
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 3 cut(s) 28, 125, 128
Fsp4HI GCNGC 3 cut(s) 28, 125, 128
GluI GCNGC 3 cut(s) 28, 125, 128
HgaI GACGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 53
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 3 cut(s) 62, 160, 296
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 88, 208
Hpy188I TCNGA 3 cut(s) 97, 171, 268
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 2 cut(s) 88, 208
Hpy99I CGWCG 1 cut(s) 150
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 124, 235
HpyF3I CTNAG 1 cut(s) 265
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 53
Kzo9I GATC 2 cut(s) 198, 268
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 3 cut(s) 51, 141, 206
Lsp1109I GCAGC 3 cut(s) 39, 136, 139
LweI GCATC 1 cut(s) 162
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 200, 270
MboI GATC 2 cut(s) 198, 268
MboII GAAGA 1 cut(s) 208
MfeI CAATTG 1 cut(s) 302
MflI RGATCY 1 cut(s) 268
MluCI AATT 2 cut(s) 220, 302
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 3 cut(s) 28, 152, 240
MslI CAYNNNNRTG 1 cut(s) 304
MunI CAATTG 1 cut(s) 302
MvnI CGCG 1 cut(s) 74
NdeI CATATG 1 cut(s) 284
NdeII GATC 2 cut(s) 198, 268
NlaIII CATG 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 131
OliI CACNNNNGTG 1 cut(s) 304
PfeI GAWTC 2 cut(s) 62, 296
PflFI GACNNNGTC 1 cut(s) 50
PkrI GCNGC 3 cut(s) 29, 126, 129
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PsuI RGATCY 1 cut(s) 268
PsyI GACNNNGTC 1 cut(s) 50
RsaI GTAC 2 cut(s) 249, 263
RsaNI GTAC 2 cut(s) 248, 262
RseI CAYNNNNRTG 1 cut(s) 304
SalI GTCGAC 1 cut(s) 86
SatI GCNGC 3 cut(s) 28, 125, 128
Sau3AI GATC 2 cut(s) 198, 268
SchI GAGTC 1 cut(s) 154
SetI ASST 5 cut(s) 39, 138, 155, 169, 215
SfaNI GCATC 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
Sse9I AATT 2 cut(s) 220, 302
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 252
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 220, 302
TfiI GAWTC 2 cut(s) 62, 296
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 3 cut(s) 27, 124, 127
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 271
TspGWI ACGGA 1 cut(s) 134
Tth111I GACNNNGTC 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.