Prupe.6G322300_v2.0.a1

WD repeat domain phosphoinositide-interacting protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
28444401 .. 28446753
2353 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G322300.1

Sequence Viewer

Length: 1215 bp
ATGACCACCATCTCCTCCTCCCCTGATTTACTCACCACGCCCCAAATGGCACACCCACAGCCTCTCCATGCAGCCTCCGAGCCCGAACCCGACGACTCTTCCTCTCTCTCCACCCAAAACACAAGTCCATGCCCAAACCCGAACCCGACCCAAATCCCCACCCTCCTCCACCTCTCCTTCAACCAGGACCACGGTTGCTTCTCCGTCGCCACCGACGTCGGCTTCCGCGTCTACAACTGCGACCCCGTCCGCGAGATCTTCCGCCGCGAATTCGGTCCAGGTGGCGGCCTCGGGATGGTCCAGATGCTCTTCCGCTGCAACGTCCTCGCCCTTGTCGGCGGCGGACCCGACCCGCTCTACTCGCCCAACAAGGTCATGATTTGGGAGGACAACGAGTCCCGTTGCATCTGCGAGCTCTCTTTCCGGTCCGAAGTCAAAGGGGTCAGGCTCCGCCGTGACCGAATCGTCGTCGTTTTGGTCCAGAAGGTTTTCGTCTACAATTTCACTGACTTAAAGCTCCTGCATCAAATTGAGACCATCGCCAACCCCAAAGGACTCTGTGAGGTCTCGAACTTGTCGGGTCATCCGGTACTGGTGTGCCCGGGGCTCCAAAAAGGTCAAGTTCGGATCGAGAATTACGGGTCAAAGCGAACCAAGTTTGTAATAGCCCACGATTCCAGGCTCGCGTGCTTGGCGCTCACGCAGGACGGTCGGCTGCTAGCCACGGCCAGTAGTAAAGGCACTTTGATCAGGATTTTCAATACTTTGGATGGTTCATTACTTCAAGAGGTAAGGAGAGGAGCAGACAGAGCAGAGATTTACAGTCTTGCTTTTTCTTCTACTGCTCAATGGTTAGCTGTCTCAAGTGATAAGGGCACTGTCCATGTTTTCAGCCTAAAGGTTGATTCAGGATCCTTGGCAAACAATAGATCATGCAGTGCATCAGAAATCAGTCCTCCTAATCCTTCCGGCATTTCATCTCTCTCTTTCATGAAAGGTGTGTTGCCAAGGTATTTCAGCTCAGAATGGTCAGTGGCTAAATATCACTTGCAGGAAGGTTTGCAGTACACTGTTGCCTTTGGACACCAGAAGAACACAGTCGTGATTCTTGGCATGGATGGAAGCTTCTATCGTTGCCAATTCGACCCTGTAAATGGAGGAGAAATGACTCAGCTGGAATATTATAACTTCTTGAAGCCAGAAGAAACTTTTTGA

Protein Analysis

405

Amino Acids

44.54

Weight (kDa)

6.79

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1185
AasI GACNNNNNNGTC 1 cut(s) 464
AatII GACGTC 1 cut(s) 219
AccBSI CCGCTC 1 cut(s) 355
AccI GTMKAC 2 cut(s) 231, 495
AccII CGCG 4 cut(s) 228, 252, 267, 686
AclWI GGATC 3 cut(s) 635, 906, 919
AcoI YGGCCR 1 cut(s) 726
AcsI RAATTY 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 2 cut(s) 591, 1067
AfiI CCNNNNNNNGG 3 cut(s) 284, 295, 1154
AgsI TTSAA 4 cut(s) 181, 760, 785, 1195
AhdI GACNNNNNGTC 1 cut(s) 394
AjnI CCWGG 3 cut(s) 183, 277, 677
AleI CACNNNNGTG 1 cut(s) 1100
AluBI AGCT 6 cut(s) 415, 517, 857, 1020, 1125, 1174
AluI AGCT 6 cut(s) 415, 517, 857, 1020, 1125, 1174
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 3 cut(s) 527, 571, 865
AlwI GGATC 3 cut(s) 635, 906, 919
Ama87I CYCGRG 2 cut(s) 290, 601
AoxI GGCC 2 cut(s) 286, 726
ApeKI GCWGC 3 cut(s) 71, 315, 715
ApoI RAATTY 1 cut(s) 269
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
Asp700I GAANNNNTTC 1 cut(s) 488
AspLEI GCGC 1 cut(s) 697
AspS9I GGNCC 6 cut(s) 187, 275, 298, 344, 426, 478
AsuC2I CCSGG 2 cut(s) 602, 603
AsuHPI GGTGA 1 cut(s) 25
AsuNHI GCTAGC 1 cut(s) 718
AvaI CYCGRG 2 cut(s) 290, 601
AvaII GGWCC 6 cut(s) 187, 275, 298, 344, 426, 478
BaeGI GKGCMC 2 cut(s) 602, 878
BaeI ACNNNNGTAYC 2 cut(s) 581, 614
BamHI GGATCC 1 cut(s) 911
BanII GRGCYC 3 cut(s) 84, 417, 609
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 3 cut(s) 83, 302, 702
BccI CCATC 5 cut(s) 17, 289, 545, 764, 1112
BceAI ACGGC 2 cut(s) 438, 741
BcgI CGANNNNNNTGC 4 cut(s) 307, 341, 692, 726
BciT130I CCWGG 3 cut(s) 185, 279, 679
BclI TGATCA 1 cut(s) 747
BcnI CCSGG 2 cut(s) 602, 603
BcoDI GTCTC 3 cut(s) 527, 571, 865
BfaI CTAG 1 cut(s) 719
BfoI RGCGCY 1 cut(s) 698
BglII AGATCT 1 cut(s) 255
BisI GCNGC 6 cut(s) 72, 265, 286, 316, 340, 716
BlsI GCNGC 6 cut(s) 73, 266, 287, 317, 341, 717
Bme1390I CCNGG 5 cut(s) 185, 279, 602, 603, 679
Bme18I GGWCC 6 cut(s) 187, 275, 298, 344, 426, 478
BmeRI GACNNNNNGTC 1 cut(s) 394
BmeT110I CYCGRG 2 cut(s) 290, 601
BmgT120I GGNCC 6 cut(s) 187, 275, 298, 344, 426, 478
BmiI GGNNCC 4 cut(s) 346, 449, 608, 913
BmrFI CCNGG 5 cut(s) 185, 279, 602, 603, 679
BmsI GCATC 4 cut(s) 294, 414, 532, 950
BmtI GCTAGC 1 cut(s) 722
BpuEI CTTGAG 1 cut(s) 847
BpuMI CCSGG 2 cut(s) 602, 603
BsaHI GRCGYC 1 cut(s) 216
BsaI GGTCTC 2 cut(s) 527, 571
BsaJI CCNNGG 7 cut(s) 190, 289, 601, 602, 723, 915, 1007
BsaWI WCCGGW 2 cut(s) 423, 586
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 295, 1154
Bse1I ACTGG 2 cut(s) 597, 729
BseBI CCWGG 3 cut(s) 185, 279, 679
BseDI CCNNGG 7 cut(s) 190, 289, 601, 602, 723, 915, 1007
BseGI GGATG 4 cut(s) 300, 583, 775, 1123
BseLI CCNNNNNNNGG 3 cut(s) 284, 295, 1154
BseMII CTCAG 2 cut(s) 1035, 1184
BseNI ACTGG 2 cut(s) 597, 729
BseRI GAGGAG 5 cut(s) 4, 7, 155, 813, 1173
BseSI GKGCMC 2 cut(s) 602, 878
BseXI GCAGC 3 cut(s) 83, 302, 702
Bsh1236I CGCG 4 cut(s) 228, 252, 267, 686
Bsh1285I CGRYCG 1 cut(s) 712
BshFI GGCC 2 cut(s) 288, 728
BsiEI CGRYCG 1 cut(s) 712
BsiHKAI GWGCWC 1 cut(s) 417
BsiHKCI CYCGRG 2 cut(s) 290, 601
BsiSI CCGG 4 cut(s) 424, 587, 602, 969
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 3 cut(s) 284, 295, 1154
BsmAI GTCTC 3 cut(s) 527, 571, 865
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 2 cut(s) 288, 728
Bso31I GGTCTC 2 cut(s) 527, 571
BsoBI CYCGRG 2 cut(s) 290, 601
Bsp1286I GDGCHC 5 cut(s) 84, 417, 602, 609, 878
Bsp143I GATC 5 cut(s) 255, 627, 747, 911, 929
BspANI GGCC 2 cut(s) 288, 728
BspCNI CTCAG 2 cut(s) 1034, 1183
BspFNI CGCG 4 cut(s) 228, 252, 267, 686
BspHI TCATGA 2 cut(s) 375, 990
BspLI GGNNCC 4 cut(s) 346, 449, 608, 913
BspOI GCTAGC 1 cut(s) 722
BspPI GGATC 3 cut(s) 635, 906, 919
BspQI GCTCTTC 1 cut(s) 314
BspTNI GGTCTC 2 cut(s) 527, 571
BsrBI CCGCTC 1 cut(s) 355
BsrI ACTGG 2 cut(s) 597, 729
BssECI CCNNGG 7 cut(s) 190, 289, 601, 602, 723, 915, 1007
BssMI GATC 5 cut(s) 255, 627, 747, 911, 929
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 2 cut(s) 915, 1007
Bst2UI CCWGG 3 cut(s) 185, 279, 679
Bst4CI ACNGT 6 cut(s) 194, 710, 824, 880, 1072, 1099
Bst6I CTCTTC 2 cut(s) 103, 314
BstACI GRCGYC 1 cut(s) 216
BstC8I GCNNGC 4 cut(s) 413, 684, 688, 720
BstDEI CTNAG 2 cut(s) 1021, 1170
BstDSI CCRYGG 2 cut(s) 190, 723
BstF5I GGATG 4 cut(s) 300, 583, 775, 1123
BstFNI CGCG 4 cut(s) 228, 252, 267, 686
BstH2I RGCGCY 1 cut(s) 698
BstHHI GCGC 1 cut(s) 697
BstKTI GATC 5 cut(s) 258, 630, 750, 914, 932
BstMAI GTCTC 3 cut(s) 527, 571, 865
BstMBI GATC 5 cut(s) 255, 627, 747, 911, 929
BstMCI CGRYCG 1 cut(s) 712
BstMWI GCNNNNNNNGC 3 cut(s) 361, 692, 809
BstNI CCWGG 3 cut(s) 185, 279, 679
BstSCI CCNGG 5 cut(s) 183, 277, 600, 601, 677
BstSLI GKGCMC 2 cut(s) 602, 878
BstUI CGCG 4 cut(s) 228, 252, 267, 686
BstV1I GCAGC 3 cut(s) 83, 302, 702
BstX2I RGATCY 2 cut(s) 255, 911
BstYI RGATCY 2 cut(s) 255, 911
BsuRI GGCC 2 cut(s) 288, 728
BtgI CCRYGG 2 cut(s) 190, 723
BtgZI GCGATG 1 cut(s) 523
BtsCI GGATG 4 cut(s) 300, 583, 775, 1123
BtsI GCAGTG 1 cut(s) 943
BtsIMutI CAGTG 5 cut(s) 504, 876, 943, 1038, 1068
Cac8I GCNNGC 4 cut(s) 413, 684, 688, 720
CciI TCATGA 2 cut(s) 375, 990
CfoI GCGC 1 cut(s) 697
Cfr13I GGNCC 6 cut(s) 187, 275, 298, 344, 426, 478
Cfr9I CCCGGG 1 cut(s) 601
CpoI CGGWCCG 1 cut(s) 426
CseI GACGC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 590, 1066
CspI CGGWCCG 1 cut(s) 426
CviAII CATG 7 cut(s) 68, 129, 376, 884, 933, 991, 1114
CviQI GTAC 2 cut(s) 590, 1066
DdeI CTNAG 2 cut(s) 1021, 1170
DpnI GATC 5 cut(s) 257, 629, 749, 913, 931
DpnII GATC 5 cut(s) 255, 627, 747, 911, 929
DrdI GACNNNNNNGTC 1 cut(s) 464
DriI GACNNNNNGTC 1 cut(s) 394
DseDI GACNNNNNNGTC 1 cut(s) 464
EaeI YGGCCR 1 cut(s) 726
Eam1104I CTCTTC 2 cut(s) 103, 314
Eam1105I GACNNNNNGTC 1 cut(s) 394
EarI CTCTTC 2 cut(s) 103, 314
EciI GGCGGA 3 cut(s) 251, 357, 440
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 2 cut(s) 915, 1007
Eco24I GRGCYC 3 cut(s) 84, 417, 609
Eco31I GGTCTC 2 cut(s) 527, 571
Eco47I GGWCC 6 cut(s) 187, 275, 298, 344, 426, 478
Eco53kI GAGCTC 1 cut(s) 415
Eco88I CYCGRG 2 cut(s) 290, 601
EcoICRI GAGCTC 1 cut(s) 415
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 3 cut(s) 183, 277, 677
EcoT14I CCWWGG 2 cut(s) 915, 1007
EcoT38I GRGCYC 3 cut(s) 84, 417, 609
ErhI CCWWGG 2 cut(s) 915, 1007
FaeI CATG 7 cut(s) 71, 132, 379, 887, 936, 994, 1117
FaiI YATR 8 cut(s) 69, 130, 377, 885, 934, 992, 1115, 1185
FaqI GGGAC 1 cut(s) 382
FatI CATG 7 cut(s) 67, 128, 375, 883, 932, 990, 1113
FauI CCCGC 1 cut(s) 360
FbaI TGATCA 1 cut(s) 747
FblI GTMKAC 2 cut(s) 231, 495
Fnu4HI GCNGC 6 cut(s) 72, 265, 286, 316, 340, 716
FokI GGATG 4 cut(s) 307, 570, 782, 1130
FriOI GRGCYC 3 cut(s) 84, 417, 609
Fsp4HI GCNGC 6 cut(s) 72, 265, 286, 316, 340, 716
FspBI CTAG 1 cut(s) 719
GlaI GCGC 1 cut(s) 696
GluI GCNGC 6 cut(s) 72, 265, 286, 316, 340, 716
HaeII RGCGCY 1 cut(s) 698
HaeIII GGCC 2 cut(s) 288, 728
HapII CCGG 4 cut(s) 424, 587, 602, 969
HgaI GACGC 1 cut(s) 217
HhaI GCGC 1 cut(s) 697
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 7 cut(s) 71, 132, 379, 887, 936, 994, 1117
Hin6I GCGC 1 cut(s) 695
HinP1I GCGC 1 cut(s) 695
HindIII AAGCTT 1 cut(s) 1123
HinfI GANTC 8 cut(s) 95, 395, 462, 555, 674, 905, 1105, 1168
HpaII CCGG 4 cut(s) 424, 587, 602, 969
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 3 cut(s) 232, 496, 1068
Hpy188I TCNGA 5 cut(s) 79, 430, 627, 946, 1024
Hpy8I GTNNAC 3 cut(s) 232, 496, 1068
Hpy99I CGWCG 6 cut(s) 95, 209, 218, 221, 470, 473
HpyAV CCTTC 4 cut(s) 187, 478, 975, 1049
HpyCH4III ACNGT 6 cut(s) 194, 710, 824, 880, 1072, 1099
HpyCH4IV ACGT 2 cut(s) 216, 321
HpyCH4V TGCA 8 cut(s) 71, 318, 405, 523, 936, 941, 1051, 1063
HpyF10VI GCNNNNNNNGC 3 cut(s) 361, 692, 809
HpyF3I CTNAG 2 cut(s) 1021, 1170
HpySE526I ACGT 2 cut(s) 216, 321
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 7 cut(s) 71, 132, 379, 887, 936, 994, 1117
HspAI GCGC 1 cut(s) 695
Ksp22I TGATCA 1 cut(s) 747
Kzo9I GATC 5 cut(s) 255, 627, 747, 911, 929
LguI GCTCTTC 1 cut(s) 314
LmnI GCTCC 4 cut(s) 453, 522, 612, 800
Lsp1109I GCAGC 3 cut(s) 83, 302, 702
LweI GCATC 4 cut(s) 294, 414, 532, 950
MaeI CTAG 1 cut(s) 719
MaeII ACGT 2 cut(s) 216, 321
MaeIII GTNAC 1 cut(s) 455
MalI GATC 5 cut(s) 257, 629, 749, 913, 931
MbiI CCGCTC 1 cut(s) 355
MboI GATC 5 cut(s) 255, 627, 747, 911, 929
MboII GAAGA 6 cut(s) 90, 250, 301, 828, 1102, 1214
MflI RGATCY 2 cut(s) 255, 911
MhlI GDGCHC 5 cut(s) 84, 417, 602, 609, 878
MluCI AATT 5 cut(s) 269, 499, 528, 634, 1139
MlyI GAGTC 4 cut(s) 89, 404, 549, 1162
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 1 cut(s) 512
MslI CAYNNNNRTG 1 cut(s) 1100
MspA1I CMGCKG 2 cut(s) 315, 1174
MspI CCGG 4 cut(s) 424, 587, 602, 969
MspR9I CCNGG 5 cut(s) 185, 279, 602, 603, 679
MvaI CCWGG 3 cut(s) 185, 279, 679
MvnI CGCG 4 cut(s) 228, 252, 267, 686
MwoI GCNNNNNNNGC 3 cut(s) 361, 692, 809
NciI CCSGG 2 cut(s) 602, 603
NdeII GATC 5 cut(s) 255, 627, 747, 911, 929
NheI GCTAGC 1 cut(s) 718
NlaIII CATG 7 cut(s) 71, 132, 379, 887, 936, 994, 1117
NlaIV GGNNCC 4 cut(s) 346, 449, 608, 913
NmuCI GTSAC 1 cut(s) 455
OliI CACNNNNGTG 1 cut(s) 1100
PagI TCATGA 2 cut(s) 375, 990
PciSI GCTCTTC 1 cut(s) 314
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 225
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 4 cut(s) 462, 674, 905, 1105
PflFI GACNNNGTC 1 cut(s) 245
PkrI GCNGC 6 cut(s) 73, 266, 287, 317, 341, 717
PleI GAGTC 4 cut(s) 89, 403, 549, 1162
PpsI GAGTC 4 cut(s) 89, 403, 549, 1162
PsiI TTATAA 1 cut(s) 1185
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 3 cut(s) 183, 277, 677
PspGI CCWGG 3 cut(s) 183, 277, 677
PspN4I GGNNCC 4 cut(s) 346, 449, 608, 913
PspPI GGNCC 6 cut(s) 187, 275, 298, 344, 426, 478
PsuI RGATCY 2 cut(s) 255, 911
PsyI GACNNNGTC 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 1174
RsaI GTAC 2 cut(s) 591, 1067
RsaNI GTAC 2 cut(s) 590, 1066
RseI CAYNNNNRTG 1 cut(s) 1100
Rsr2I CGGWCCG 1 cut(s) 426
RsrII CGGWCCG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 417
SapI GCTCTTC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 6 cut(s) 72, 265, 286, 316, 340, 716
Sau3AI GATC 5 cut(s) 255, 627, 747, 911, 929
Sau96I GGNCC 6 cut(s) 187, 275, 298, 344, 426, 478
SchI GAGTC 4 cut(s) 89, 404, 549, 1162
ScrFI CCNGG 5 cut(s) 185, 279, 602, 603, 679
SduI GDGCHC 5 cut(s) 84, 417, 602, 609, 878
SfaNI GCATC 4 cut(s) 294, 414, 532, 950
SinI GGWCC 6 cut(s) 187, 275, 298, 344, 426, 478
SmaI CCCGGG 1 cut(s) 603
SmiMI CAYNNNNRTG 1 cut(s) 1100
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
Sse9I AATT 5 cut(s) 269, 499, 528, 634, 1139
SspI AATATT 1 cut(s) 1181
SspMI CTAG 1 cut(s) 719
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 5 cut(s) 183, 277, 600, 601, 677
StyI CCWWGG 2 cut(s) 915, 1007
TaaI ACNGT 6 cut(s) 194, 710, 824, 880, 1072, 1099
TaiI ACGT 2 cut(s) 219, 324
TaqI TCGA 3 cut(s) 569, 630, 1143
TaqII GACCGA 2 cut(s) 263, 474
TasI AATT 5 cut(s) 269, 499, 528, 634, 1139
TatI WGTACW 1 cut(s) 1065
TauI GCSGC 3 cut(s) 267, 288, 342
TfiI GAWTC 4 cut(s) 462, 674, 905, 1105
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TscAI CASTG 5 cut(s) 511, 883, 943, 1038, 1075
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 3 cut(s) 71, 315, 715
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 4 cut(s) 765, 966, 979, 1007
TspGWI ACGGA 1 cut(s) 193
TspMI CCCGGG 1 cut(s) 601
TspRI CASTG 5 cut(s) 511, 883, 943, 1038, 1075
Tth111I GACNNNGTC 1 cut(s) 245
VpaK11BI GGWCC 6 cut(s) 187, 275, 298, 344, 426, 478
XapI RAATTY 1 cut(s) 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmaI CCCGGG 1 cut(s) 601
XmiI GTMKAC 2 cut(s) 231, 495
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 1 cut(s) 719
ZraI GACGTC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.