Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003728.1

Orthogroup ID

OG0001367

Physical Location & Seq

Genomic Coordinates Reverse (-)

123 .. 908

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003728.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgaccaccaccgccttttccttttcctcacctccctttcaattcaccgtccccgatttgatggcctccgactgcgccaccgacgactcctactgtccctccccggcccaaaacccgactccgactccgactcctcttcccccggcccagctcctcaacctctccttcaaccaggaccacggctgcttcgccgccggcaccgacctcggcttccgcatctacaactgcgaccccttccgcgagatcttccgccgcgacttcggcccacgcggcgccgtcggactggtccagatgctcttccgctgcaacatcctcaccatcgtcggcggcggccccgaccccctctactcccccaacaaggtcatgatctgggacgaccaccagtcccgctgcatcggcgagctctcgttccgctccgaggtcaaagccgtcaagctccgccgcgaccgcatcgtcgtcgttctggtccagaagatcttcgtctacaatttcgccgatttgaagcttctccaccagattgagaccatcgccaaccccaagggactctgcgaggtctcgcacgtcggccctcaggcggtgctcgtctgcccggggctccagaaaggtcaaattcgggtcgagcattacgggtcgaagcggaccaagtttattatggcccacgattccaggctggcctgcttcgctctcacgcaggacggcaggttgctcgccaccgccagcagtaaggggactttgatcagagttttcaatactctggatggttcattgctgcaagaggtgctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

261

Amino Acids

28.85

Weight (kDa)

8.37

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62770 AT3G62770
fragaria_vesca	FvH4_2g25170 FvH4_6g06350 FvH4_6g06350 FvH4_6g06350 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370
malus_domestica	MD03G1283100.v1.1 MD04G1202000.v1.1 MD11G1303400.v1.1 MD12G1216000.v1.1 MD12G1216100.v1.1
prunus_persica	Prupe.6G322300_v2.0.a1 Prupe.8G256500_v2.0.a1
pyrus_communis	pycom03g22400 pycom04g17820 pycom11g26510 pycom12g20160
rosa_chinensis	RchiOBHm_Chr3g0455431 RchiOBHm_Chr3g0455461 RchiOBHm_Chr6g0293291
rosa_laevigata	RLG00000011961 RLG00000025360 RLG00000025363
rosa_multiflora	Rmu_sc0003728.1_g000001 Rmu_sc0008350.1_g000001 Rmu_ssc0000162.1_g000036
rosa_roxburghii	Rroxscaffold_6G00424260 Rroxscaffold_6G00424290 Rroxscaffold_7G00174280
rosa_rugosa	Rorug03G0007500 Rorug03G0007800 Rorug06G0234300
rosa_samantha	Rh2AG090700 Rh3AG066800 Rh3AG067200 Rh3BG069200 Rh3BG069500 Rh3CG067600 Rh3CG068000 Rh3DG069200 Rh3DG069500 Rh5BG179700 Rh6AG347100 Rh6BG354400 Rh6CG214700 Rh6DG204600
rosa_wichuraiana	Rw3G005280 Rw3G005310 Rw6G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	452
Acc36I	ACCTGC	1 cut(s)	690
AccB1I	GGYRCC	2 cut(s)	197, 272
AccBSI	CCGCTC	1 cut(s)	414
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	4 cut(s)	240, 255, 270, 444
AcsI	RAATTY	1 cut(s)	609
AcyI	GRCGYC	1 cut(s)	273
AfiI	CCNNNNNNNGG	3 cut(s)	358, 418, 574
AgsI	TTSAA	4 cut(s)	41, 169, 502, 748
AhdI	GACNNNNNGTC	1 cut(s)	382
AjiI	CACGTC	1 cut(s)	562
AjnI	CCWGG	2 cut(s)	171, 665
AluBI	AGCT	4 cut(s)	151, 403, 436, 505
AluI	AGCT	4 cut(s)	151, 403, 436, 505
Alw21I	GWGCWC	3 cut(s)	405, 582, 783
Alw26I	GTCTC	2 cut(s)	515, 559
Ama87I	CYCGRG	1 cut(s)	589
AoxI	GGCC	8 cut(s)	63, 105, 144, 262, 331, 565, 654, 672
ApeKI	GCWGC	4 cut(s)	183, 303, 390, 769
ApoI	RAATTY	1 cut(s)	609
Asp700I	GAANNNNTTC	1 cut(s)	476
AspLEI	GCGC	2 cut(s)	77, 275
AsuC2I	CCSGG	4 cut(s)	104, 143, 590, 591
AsuHPI	GGTGA	3 cut(s)	21, 37, 307
AvaI	CYCGRG	1 cut(s)	589
AvaII	GGWCC	4 cut(s)	175, 286, 466, 639
AxyI	CCTNAGG	1 cut(s)	570
BanI	GGYRCC	2 cut(s)	197, 272
BanII	GRGCYC	2 cut(s)	405, 597
Bbv12I	GWGCWC	3 cut(s)	405, 582, 783
BbvI	GCAGC	4 cut(s)	170, 290, 377, 756
BccI	CCATC	4 cut(s)	55, 326, 533, 752
BceAI	ACGGC	4 cut(s)	196, 260, 413, 712
BcgI	CGANNNNNNTGC	6 cut(s)	187, 221, 439, 473, 688, 722
BciT130I	CCWGG	2 cut(s)	173, 667
BclI	TGATCA	1 cut(s)	735
BcnI	CCSGG	4 cut(s)	104, 143, 590, 591
BcoDI	GTCTC	2 cut(s)	515, 559
BfoI	RGCGCY	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	690
BglI	GCCNNNNNGGC	1 cut(s)	270
BglII	AGATCT	2 cut(s)	243, 474
Bme1390I	CCNGG	6 cut(s)	104, 143, 173, 590, 591, 667
Bme18I	GGWCC	4 cut(s)	175, 286, 466, 639
BmeRI	GACNNNNNGTC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	589
BmgBI	CACGTC	1 cut(s)	562
BmiI	GGNNCC	4 cut(s)	199, 274, 334, 596
BmrFI	CCNGG	6 cut(s)	104, 143, 173, 590, 591, 667
BmsI	GCATC	4 cut(s)	225, 282, 402, 459
BpmI	CTGGAG	1 cut(s)	581
BpuMI	CCSGG	4 cut(s)	104, 143, 590, 591
BsaHI	GRCGYC	1 cut(s)	273
BsaI	GGTCTC	2 cut(s)	515, 559
BsaJI	CCNNGG	8 cut(s)	102, 141, 178, 205, 417, 537, 589, 590
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 109, 113, 115, 139, 145
Bsc4I	CCNNNNNNNGG	3 cut(s)	358, 418, 574
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	288, 382
Bse21I	CCTNAGG	1 cut(s)	570
Bse3DI	GCAATG	1 cut(s)	764
BseBI	CCWGG	2 cut(s)	173, 667
BseDI	CCNNGG	8 cut(s)	102, 141, 178, 205, 417, 537, 589, 590
BseGI	GGATG	2 cut(s)	309, 763
BseLI	CCNNNNNNNGG	3 cut(s)	358, 418, 574
BseMI	GCAATG	1 cut(s)	764
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	2 cut(s)	288, 382
BseRI	GAGGAG	2 cut(s)	123, 143
BseXI	GCAGC	4 cut(s)	170, 290, 377, 756
BseYI	CCCAGC	1 cut(s)	147
Bsh1236I	CGCG	4 cut(s)	240, 255, 270, 444
Bsh1285I	CGRYCG	1 cut(s)	448
BshFI	GGCC	8 cut(s)	65, 107, 146, 264, 333, 567, 656, 674
BshNI	GGYRCC	2 cut(s)	197, 272
BsiEI	CGRYCG	1 cut(s)	448
BsiHKAI	GWGCWC	3 cut(s)	405, 582, 783
BsiHKCI	CYCGRG	1 cut(s)	589
BsiSI	CCGG	4 cut(s)	104, 143, 195, 590
BslFI	GGGAC	6 cut(s)	35, 81, 370, 386, 555, 742
BslI	CCNNNNNNNGG	3 cut(s)	358, 418, 574
BsmAI	GTCTC	2 cut(s)	515, 559
BsmFI	GGGAC	6 cut(s)	35, 81, 370, 386, 555, 742
BsnI	GGCC	8 cut(s)	65, 107, 146, 264, 333, 567, 656, 674
Bso31I	GGTCTC	2 cut(s)	515, 559
BsoBI	CYCGRG	1 cut(s)	589
Bsp1286I	GDGCHC	4 cut(s)	405, 582, 597, 783
Bsp143I	GATC	4 cut(s)	243, 366, 474, 735
BspANI	GGCC	8 cut(s)	65, 107, 146, 264, 333, 567, 656, 674
BspCNI	CTCAG	1 cut(s)	583
BspFNI	CGCG	4 cut(s)	240, 255, 270, 444
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	4 cut(s)	199, 274, 334, 596
BspMI	ACCTGC	1 cut(s)	690
BspQI	GCTCTTC	1 cut(s)	302
BspT107I	GGYRCC	2 cut(s)	197, 272
BspTNI	GGTCTC	2 cut(s)	515, 559
BsrBI	CCGCTC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	764
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	288, 382
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	8 cut(s)	102, 141, 178, 205, 417, 537, 589, 590
BssMI	GATC	4 cut(s)	243, 366, 474, 735
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	2 cut(s)	173, 667
Bst4CI	ACNGT	2 cut(s)	49, 95
Bst6I	CTCTTC	2 cut(s)	141, 302
BstACI	GRCGYC	1 cut(s)	273
BstAPI	GCANNNNNTGC	1 cut(s)	778
BstC8I	GCNNGC	6 cut(s)	196, 401, 672, 676, 708, 718
BstDEI	CTNAG	1 cut(s)	570
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	2 cut(s)	309, 763
BstFNI	CGCG	4 cut(s)	240, 255, 270, 444
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	2 cut(s)	77, 275
BstKTI	GATC	4 cut(s)	246, 369, 477, 738
BstMAI	GTCTC	2 cut(s)	515, 559
BstMBI	GATC	4 cut(s)	243, 366, 474, 735
BstMCI	CGRYCG	1 cut(s)	448
BstMWI	GCNNNNNNNGC	6 cut(s)	261, 270, 396, 447, 680, 778
BstNI	CCWGG	2 cut(s)	173, 667
BstSCI	CCNGG	6 cut(s)	102, 141, 171, 588, 589, 665
BstUI	CGCG	4 cut(s)	240, 255, 270, 444
BstV1I	GCAGC	4 cut(s)	170, 290, 377, 756
BstX2I	RGATCY	2 cut(s)	243, 474
BstYI	RGATCY	2 cut(s)	243, 474
Bsu36I	CCTNAGG	1 cut(s)	570
BsuRI	GGCC	8 cut(s)	65, 107, 146, 264, 333, 567, 656, 674
BtgI	CCRYGG	1 cut(s)	178
BtgZI	GCGATG	1 cut(s)	511
BtrI	CACGTC	1 cut(s)	562
BtsCI	GGATG	2 cut(s)	309, 763
BveI	ACCTGC	1 cut(s)	690
Cac8I	GCNNGC	6 cut(s)	196, 401, 672, 676, 708, 718
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	2 cut(s)	77, 275
Cfr10I	RCCGGY	1 cut(s)	194
Cfr9I	CCCGGG	1 cut(s)	589
CviAII	CATG	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	570
DinI	GGCGCC	1 cut(s)	274
DpnI	GATC	4 cut(s)	245, 368, 476, 737
DpnII	GATC	4 cut(s)	243, 366, 474, 735
DrdI	GACNNNNNNGTC	1 cut(s)	452
DriI	GACNNNNNGTC	1 cut(s)	382
DseDI	GACNNNNNNGTC	1 cut(s)	452
Eam1104I	CTCTTC	2 cut(s)	141, 302
Eam1105I	GACNNNNNGTC	1 cut(s)	382
EarI	CTCTTC	2 cut(s)	141, 302
EciI	GGCGGA	2 cut(s)	239, 428
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	537
Eco24I	GRGCYC	2 cut(s)	405, 597
Eco31I	GGTCTC	2 cut(s)	515, 559
Eco47I	GGWCC	4 cut(s)	175, 286, 466, 639
Eco53kI	GAGCTC	1 cut(s)	403
Eco81I	CCTNAGG	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	171, 665
EcoT14I	CCWWGG	1 cut(s)	537
EcoT38I	GRGCYC	2 cut(s)	405, 597
EgeI	GGCGCC	1 cut(s)	274
EheI	GGCGCC	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	537
FaeI	CATG	1 cut(s)	367
FaiI	YATR	2 cut(s)	365, 653
FaqI	GGGAC	6 cut(s)	35, 81, 370, 386, 555, 742
FatI	CATG	1 cut(s)	363
FauI	CCCGC	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	735
FblI	GTMKAC	1 cut(s)	483
FokI	GGATG	2 cut(s)	296, 770
FriOI	GRGCYC	2 cut(s)	405, 597
GlaI	GCGC	2 cut(s)	76, 274
GsaI	CCCAGC	1 cut(s)	151
GsuI	CTGGAG	1 cut(s)	581
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	8 cut(s)	65, 107, 146, 264, 333, 567, 656, 674
HapII	CCGG	4 cut(s)	104, 143, 195, 590
HhaI	GCGC	2 cut(s)	77, 275
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	2 cut(s)	75, 273
HinP1I	GCGC	2 cut(s)	75, 273
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	6 cut(s)	86, 118, 124, 130, 543, 662
HpaII	CCGG	4 cut(s)	104, 143, 195, 590
HphI	GGTGA	3 cut(s)	21, 37, 307
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	6 cut(s)	70, 123, 129, 281, 418, 740
Hpy188III	TCNNGA	5 cut(s)	289, 364, 469, 598, 755
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	6 cut(s)	86, 281, 326, 458, 461, 566
HpyAV	CCTTC	2 cut(s)	175, 244
HpyCH4III	ACNGT	2 cut(s)	49, 95
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	3 cut(s)	306, 393, 772
HpyF10VI	GCNNNNNNNGC	6 cut(s)	261, 270, 396, 447, 680, 778
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	1 cut(s)	561
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	2 cut(s)	75, 273
KasI	GGCGCC	1 cut(s)	272
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	735
Kzo9I	GATC	4 cut(s)	243, 366, 474, 735
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	4 cut(s)	156, 419, 441, 600
Lsp1109I	GCAGC	4 cut(s)	170, 290, 377, 756
LweI	GCATC	4 cut(s)	225, 282, 402, 459
MaeII	ACGT	1 cut(s)	561
MalI	GATC	4 cut(s)	245, 368, 476, 737
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	4 cut(s)	243, 366, 474, 735
MboII	GAAGA	5 cut(s)	128, 238, 289, 469, 484
MflI	RGATCY	2 cut(s)	243, 474
MhlI	GDGCHC	4 cut(s)	405, 582, 597, 783
MluCI	AATT	3 cut(s)	41, 487, 609
Mly113I	GGCGCC	1 cut(s)	273
MlyI	GAGTC	5 cut(s)	80, 112, 118, 124, 537
MmeI	TCCRAC	4 cut(s)	93, 146, 152, 259
MroNI	GCCGGC	1 cut(s)	194
MroXI	GAANNNNTTC	1 cut(s)	476
MspA1I	CMGCKG	2 cut(s)	303, 390
MspI	CCGG	4 cut(s)	104, 143, 195, 590
MspR9I	CCNGG	6 cut(s)	104, 143, 173, 590, 591, 667
MvaI	CCWGG	2 cut(s)	173, 667
MvnI	CGCG	4 cut(s)	240, 255, 270, 444
MwoI	GCNNNNNNNGC	6 cut(s)	261, 270, 396, 447, 680, 778
NaeI	GCCGGC	1 cut(s)	196
NarI	GGCGCC	1 cut(s)	273
NciI	CCSGG	4 cut(s)	104, 143, 590, 591
NdeII	GATC	4 cut(s)	243, 366, 474, 735
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	4 cut(s)	199, 274, 334, 596
NmeAIII	GCCGAG	1 cut(s)	186
PagI	TCATGA	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	302
PdiI	GCCGGC	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	662
PleI	GAGTC	5 cut(s)	80, 112, 118, 124, 537
PluTI	GGCGCC	1 cut(s)	276
PpsI	GAGTC	5 cut(s)	80, 112, 118, 124, 537
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	171, 665
PspFI	CCCAGC	1 cut(s)	147
PspGI	CCWGG	2 cut(s)	171, 665
PspN4I	GGNNCC	4 cut(s)	199, 274, 334, 596
PsuI	RGATCY	2 cut(s)	243, 474
SacI	GAGCTC	1 cut(s)	405
SapI	GCTCTTC	1 cut(s)	302
Sau3AI	GATC	4 cut(s)	243, 366, 474, 735
SchI	GAGTC	5 cut(s)	80, 112, 118, 124, 537
ScrFI	CCNGG	6 cut(s)	104, 143, 173, 590, 591, 667
SduI	GDGCHC	4 cut(s)	405, 582, 597, 783
SfaNI	GCATC	4 cut(s)	225, 282, 402, 459
SfoI	GGCGCC	1 cut(s)	274
SinI	GGWCC	4 cut(s)	175, 286, 466, 639
SmaI	CCCGGG	1 cut(s)	591
Sse9I	AATT	3 cut(s)	41, 487, 609
SspDI	GGCGCC	1 cut(s)	272
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	6 cut(s)	102, 141, 171, 588, 589, 665
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	2 cut(s)	49, 95
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	2 cut(s)	618, 632
TasI	AATT	3 cut(s)	41, 487, 609
TauI	GCSGC	6 cut(s)	194, 255, 273, 330, 333, 444
TfiI	GAWTC	1 cut(s)	662
TseI	GCWGC	4 cut(s)	183, 303, 390, 769
TspDTI	ATGAA	1 cut(s)	753
TspMI	CCCGGG	1 cut(s)	589
VpaK11BI	GGWCC	4 cut(s)	175, 286, 466, 639
XapI	RAATTY	1 cut(s)	609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XmaI	CCCGGG	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.