Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001367

Physical Location & Seq

Genomic Coordinates Reverse (-)

45428525 .. 45430815

Gene Structure 2291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGAGGCATGAGAGCTATAGATGGATAGAAACTCGCCTTCAAGCTTGGCACAACTCACAATCCAAATCACATCTATACTTCGCTGTACTCCCTTTCTCCAGTTTAAACAACAAAACCCCAACTTCGTCATTTCCCCACTTTTCCGATGAACCCATGACCACCACCGCCTTTTCCTTTTCCTCTCCTCCCTTTCAATTCCCGGTCCCCGATTTAATGGCCTCCGACTGCGCCCCCGACGACTCCTACTGTCCCTCCCCGGCCCAAAACCCGAATCCGACTCCGACTCCTCTTCCCCCGGCCCAGCTCCTCAACCTCTCCTTCAACCAGGACCACAGCTGCTTCGCCGCCGGCACCGACCTCGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGATCTTCCGCCGCGACTTCGGCCCACGCGGCGCCGTCGGATTGGTCCAGATGCTCTTCCGCTGCAACATCCTCACCATCGTCGGCGGCGGCCCCGACCCCCTCTACTCCCCCAACAAGGTCATGATCTGGGACGACCACCAGTCCCGCTGCATCGGCGAGCTCTCCTTCCGCTCCGAGGTCAAAGCCGTCAAGCTCCGCCGCGACCGCATCGTCGTCGTTCTGGTCCAGAAGATCTTCGTCTACAATTTCGCCGATTTGAAGCTTCTCCACCAGATTGAGACCATCGCCAACCCCAAGGGACTCTGCGAGGTCTCGCACGTCGGGCCTCAGGCGGTGCTCGTCTGCCCGGGGCTCCAGAAAGGTCAAATTCGGGTCGAGCATTACGGGTCGAAGCGGACCAAGTTTATTATGGCCCACGATTCCAGGCTGGCCTGCTTCGCGCTCACGCAGGACGGGAGGTTGCTGGCTACGGCCAGCAGTAAGGGGACTTTGATCAGAGTTTTCAATACTCTGGATGGTTCATTGCTGCAAGAGGTAAGGAGAGGAGCAGATAGAGCAGAGATACATAGTCTTGCTTTCTCTGCTAATGCCCAATGGCTAGCTGTCTCGAGTGACAAGGGAACTATCCATGTTTTCAATCTAAAGGTTGATTCAGGATCCTTGGGGAATGATAGACCACGCAGTCCATCAGAATCCAGTCCTCCTCATCCATCAGGCGTTTCATCTCTCTCTTTCATGAAAGGTGTTCTGCCAAGGTATTTCAGCTCAGAATGGTCAGTGGCTAAATTTCACTTGCACGAAGGTTTGGAGTACATTGTTGCCTTTGGCCACCAGAAGAACACTGTCGTTGTTCTTGGCATGGATGGAAGCTTCTATCGATGTGAGTTTGACCCTGTCAATGGAGGAGAAATGACTCAGCTTGAATATTATAATTTCTTGAAGCCAGAAGAAACCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

451

Amino Acids

50.42

Weight (kDa)

7.64

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	104 - 365	1.9e-34	PROPPIN
Beta-prop_THOC3	PF25174	170 - 347	2.4e-13	THOC3 beta-propeller domain
WD40_Prp19	PF24814	172 - 347	2.5e-07	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	199 - 377	4.5e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	204 - 348	9.5e-08	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	251 - 347	3e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	265 - 346	1.5e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62770 AT3G62770
fragaria_vesca	FvH4_2g25170 FvH4_6g06350 FvH4_6g06350 FvH4_6g06350 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370
malus_domestica	MD03G1283100.v1.1 MD04G1202000.v1.1 MD11G1303400.v1.1 MD12G1216000.v1.1 MD12G1216100.v1.1
prunus_persica	Prupe.6G322300_v2.0.a1 Prupe.8G256500_v2.0.a1
pyrus_communis	pycom03g22400 pycom04g17820 pycom11g26510 pycom12g20160
rosa_chinensis	RchiOBHm_Chr3g0455431 RchiOBHm_Chr3g0455461 RchiOBHm_Chr6g0293291
rosa_laevigata	RLG00000011961 RLG00000025360 RLG00000025363
rosa_multiflora	Rmu_sc0003728.1_g000001 Rmu_sc0008350.1_g000001 Rmu_ssc0000162.1_g000036
rosa_roxburghii	Rroxscaffold_6G00424260 Rroxscaffold_6G00424290 Rroxscaffold_7G00174280
rosa_rugosa	Rorug03G0007500 Rorug03G0007800 Rorug06G0234300
rosa_samantha	Rh2AG090700 Rh3AG066800 Rh3AG067200 Rh3BG069200 Rh3BG069500 Rh3CG067600 Rh3CG068000 Rh3DG069200 Rh3DG069500 Rh5BG179700 Rh6AG347100 Rh6BG354400 Rh6CG214700 Rh6DG204600
rosa_wichuraiana	Rw3G005280 Rw3G005310 Rw6G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1326
AasI	GACNNNNNNGTC	2 cut(s)	605, 1077
AccB1I	GGYRCC	2 cut(s)	350, 425
AccBSI	CCGCTC	1 cut(s)	567
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	5 cut(s)	393, 408, 423, 597, 836
AclWI	GGATC	2 cut(s)	1047, 1060
AcoI	YGGCCR	2 cut(s)	867, 1222
AcsI	RAATTY	2 cut(s)	762, 1181
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	2 cut(s)	87, 1208
AfiI	CCNNNNNNNGG	3 cut(s)	511, 571, 1295
AgsI	TTSAA	8 cut(s)	41, 194, 322, 655, 901, 1033, 1319, 1336
AhdI	GACNNNNNGTC	1 cut(s)	535
AjiI	CACGTC	1 cut(s)	715
AjnI	CCWGG	2 cut(s)	324, 818
Alw21I	GWGCWC	2 cut(s)	558, 735
Alw26I	GTCTC	3 cut(s)	668, 712, 1006
AlwI	GGATC	2 cut(s)	1047, 1060
Ama87I	CYCGRG	2 cut(s)	742, 1003
ApeKI	GCWGC	4 cut(s)	336, 456, 543, 922
ApoI	RAATTY	2 cut(s)	762, 1181
Asp700I	GAANNNNTTC	1 cut(s)	629
AspLEI	GCGC	3 cut(s)	230, 428, 838
AsuC2I	CCSGG	5 cut(s)	200, 257, 296, 743, 744
AsuHPI	GGTGA	1 cut(s)	460
AsuNHI	GCTAGC	1 cut(s)	994
AvaI	CYCGRG	2 cut(s)	742, 1003
AvaII	GGWCC	5 cut(s)	202, 328, 439, 619, 792
AxyI	CCTNAGG	1 cut(s)	723
BalI	TGGCCA	1 cut(s)	1224
BamHI	GGATCC	1 cut(s)	1052
BanI	GGYRCC	2 cut(s)	350, 425
BanII	GRGCYC	2 cut(s)	558, 750
Bbv12I	GWGCWC	2 cut(s)	558, 735
BbvI	GCAGC	4 cut(s)	323, 443, 530, 909
BccI	CCATC	7 cut(s)	15, 479, 686, 905, 1090, 1114, 1253
BceAI	ACGGC	3 cut(s)	413, 566, 882
BcgI	CGANNNNNNTGC	4 cut(s)	340, 374, 592, 626
BciT130I	CCWGG	2 cut(s)	326, 820
BclI	TGATCA	1 cut(s)	888
BcnI	CCSGG	5 cut(s)	200, 257, 296, 743, 744
BcoDI	GTCTC	3 cut(s)	668, 712, 1006
BfaI	CTAG	1 cut(s)	995
BfmI	CTRYAG	1 cut(s)	16
BfoI	RGCGCY	1 cut(s)	429
BglI	GCCNNNNNGGC	1 cut(s)	423
BglII	AGATCT	2 cut(s)	396, 627
Bme1390I	CCNGG	7 cut(s)	200, 257, 296, 326, 743, 744, 820
Bme18I	GGWCC	5 cut(s)	202, 328, 439, 619, 792
BmeRI	GACNNNNNGTC	1 cut(s)	535
BmeT110I	CYCGRG	2 cut(s)	742, 1003
BmgBI	CACGTC	1 cut(s)	715
BmiI	GGNNCC	6 cut(s)	204, 352, 427, 487, 749, 1054
BmrFI	CCNGG	7 cut(s)	200, 257, 296, 326, 743, 744, 820
BmsI	GCATC	4 cut(s)	378, 435, 555, 612
BmtI	GCTAGC	1 cut(s)	998
BpmI	CTGGAG	2 cut(s)	82, 734
BpuMI	CCSGG	5 cut(s)	200, 257, 296, 743, 744
Bsa29I	ATCGAT	1 cut(s)	1273
BsaHI	GRCGYC	1 cut(s)	426
BsaI	GGTCTC	2 cut(s)	668, 712
BsaJI	CCNNGG	9 cut(s)	255, 294, 358, 570, 690, 742, 743, 1056, 1148
BsaXI	ACNNNNNCTCC	4 cut(s)	236, 266, 268, 298
Bsc4I	CCNNNNNNNGG	3 cut(s)	511, 571, 1295
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	3 cut(s)	99, 535, 1092
Bse21I	CCTNAGG	1 cut(s)	723
Bse3DI	GCAATG	1 cut(s)	917
BseBI	CCWGG	2 cut(s)	326, 820
BseCI	ATCGAT	1 cut(s)	1273
BseDI	CCNNGG	9 cut(s)	255, 294, 358, 570, 690, 742, 743, 1056, 1148
BseGI	GGATG	4 cut(s)	462, 916, 1102, 1264
BseLI	CCNNNNNNNGG	3 cut(s)	511, 571, 1295
BseMI	GCAATG	1 cut(s)	917
BseMII	CTCAG	3 cut(s)	737, 1176, 1325
BseNI	ACTGG	3 cut(s)	99, 535, 1092
BseRI	GAGGAG	6 cut(s)	174, 276, 296, 954, 1089, 1314
BseXI	GCAGC	4 cut(s)	323, 443, 530, 909
BseYI	CCCAGC	1 cut(s)	300
Bsh1236I	CGCG	5 cut(s)	393, 408, 423, 597, 836
Bsh1285I	CGRYCG	1 cut(s)	601
BshNI	GGYRCC	2 cut(s)	350, 425
BshVI	ATCGAT	1 cut(s)	1273
BsiEI	CGRYCG	1 cut(s)	601
BsiHKAI	GWGCWC	2 cut(s)	558, 735
BsiHKCI	CYCGRG	2 cut(s)	742, 1003
BsiSI	CCGG	5 cut(s)	200, 257, 296, 348, 743
BslFI	GGGAC	6 cut(s)	188, 234, 523, 539, 708, 895
BslI	CCNNNNNNNGG	3 cut(s)	511, 571, 1295
BsmAI	GTCTC	3 cut(s)	668, 712, 1006
BsmFI	GGGAC	6 cut(s)	188, 234, 523, 539, 708, 895
Bso31I	GGTCTC	2 cut(s)	668, 712
BsoBI	CYCGRG	2 cut(s)	742, 1003
Bsp1286I	GDGCHC	3 cut(s)	558, 735, 750
Bsp143I	GATC	5 cut(s)	396, 519, 627, 888, 1052
BspCNI	CTCAG	3 cut(s)	736, 1175, 1324
BspDI	ATCGAT	1 cut(s)	1273
BspFNI	CGCG	5 cut(s)	393, 408, 423, 597, 836
BspHI	TCATGA	2 cut(s)	516, 1131
BspLI	GGNNCC	6 cut(s)	204, 352, 427, 487, 749, 1054
BspOI	GCTAGC	1 cut(s)	998
BspPI	GGATC	2 cut(s)	1047, 1060
BspQI	GCTCTTC	1 cut(s)	455
BspT107I	GGYRCC	2 cut(s)	350, 425
BspTNI	GGTCTC	2 cut(s)	668, 712
BsrBI	CCGCTC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	917
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	3 cut(s)	99, 535, 1092
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	9 cut(s)	255, 294, 358, 570, 690, 742, 743, 1056, 1148
BssMI	GATC	5 cut(s)	396, 519, 627, 888, 1052
BssNI	GRCGYC	1 cut(s)	426
BssT1I	CCWWGG	3 cut(s)	690, 1056, 1148
Bst2UI	CCWGG	2 cut(s)	326, 820
Bst4CI	ACNGT	2 cut(s)	248, 1240
Bst6I	CTCTTC	2 cut(s)	294, 455
BstACI	GRCGYC	1 cut(s)	426
BstC8I	GCNNGC	7 cut(s)	349, 554, 825, 829, 861, 871, 996
BstDEI	CTNAG	3 cut(s)	723, 1162, 1311
BstF5I	GGATG	4 cut(s)	462, 916, 1102, 1264
BstFNI	CGCG	5 cut(s)	393, 408, 423, 597, 836
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	3 cut(s)	230, 428, 838
BstKTI	GATC	5 cut(s)	399, 522, 630, 891, 1055
BstMAI	GTCTC	3 cut(s)	668, 712, 1006
BstMBI	GATC	5 cut(s)	396, 519, 627, 888, 1052
BstMCI	CGRYCG	1 cut(s)	601
BstMWI	GCNNNNNNNGC	8 cut(s)	414, 423, 549, 600, 718, 833, 950, 977
BstNI	CCWGG	2 cut(s)	326, 820
BstSCI	CCNGG	7 cut(s)	198, 255, 294, 324, 741, 742, 818
BstSFI	CTRYAG	1 cut(s)	16
BstUI	CGCG	5 cut(s)	393, 408, 423, 597, 836
BstV1I	GCAGC	4 cut(s)	323, 443, 530, 909
BstX2I	RGATCY	3 cut(s)	396, 627, 1052
BstYI	RGATCY	3 cut(s)	396, 627, 1052
Bsu15I	ATCGAT	1 cut(s)	1273
Bsu36I	CCTNAGG	1 cut(s)	723
BsuTUI	ATCGAT	1 cut(s)	1273
BtgZI	GCGATG	1 cut(s)	664
BtrI	CACGTC	1 cut(s)	715
BtsCI	GGATG	4 cut(s)	462, 916, 1102, 1264
BtsIMutI	CAGTG	2 cut(s)	1179, 1236
Cac8I	GCNNGC	7 cut(s)	349, 554, 825, 829, 861, 871, 996
CciI	TCATGA	2 cut(s)	516, 1131
CfoI	GCGC	3 cut(s)	230, 428, 838
Cfr10I	RCCGGY	1 cut(s)	347
Cfr9I	CCCGGG	1 cut(s)	742
ClaI	ATCGAT	1 cut(s)	1273
Csp6I	GTAC	2 cut(s)	86, 1207
CviAII	CATG	6 cut(s)	8, 154, 517, 1025, 1132, 1255
CviQI	GTAC	2 cut(s)	86, 1207
DdeI	CTNAG	3 cut(s)	723, 1162, 1311
DinI	GGCGCC	1 cut(s)	427
DpnI	GATC	5 cut(s)	398, 521, 629, 890, 1054
DpnII	GATC	5 cut(s)	396, 519, 627, 888, 1052
DraI	TTTAAA	1 cut(s)	105
DrdI	GACNNNNNNGTC	2 cut(s)	605, 1077
DriI	GACNNNNNGTC	1 cut(s)	535
DseDI	GACNNNNNNGTC	2 cut(s)	605, 1077
EaeI	YGGCCR	2 cut(s)	867, 1222
Eam1104I	CTCTTC	2 cut(s)	294, 455
Eam1105I	GACNNNNNGTC	1 cut(s)	535
EarI	CTCTTC	2 cut(s)	294, 455
EciI	GGCGGA	2 cut(s)	392, 581
Ecl136II	GAGCTC	1 cut(s)	556
Eco130I	CCWWGG	3 cut(s)	690, 1056, 1148
Eco24I	GRGCYC	2 cut(s)	558, 750
Eco31I	GGTCTC	2 cut(s)	668, 712
Eco47I	GGWCC	5 cut(s)	202, 328, 439, 619, 792
Eco53kI	GAGCTC	1 cut(s)	556
Eco81I	CCTNAGG	1 cut(s)	723
Eco88I	CYCGRG	2 cut(s)	742, 1003
EcoICRI	GAGCTC	1 cut(s)	556
EcoRII	CCWGG	2 cut(s)	324, 818
EcoT14I	CCWWGG	3 cut(s)	690, 1056, 1148
EcoT38I	GRGCYC	2 cut(s)	558, 750
EgeI	GGCGCC	1 cut(s)	427
EheI	GGCGCC	1 cut(s)	427
ErhI	CCWWGG	3 cut(s)	690, 1056, 1148
FaeI	CATG	6 cut(s)	11, 157, 520, 1028, 1135, 1258
FaqI	GGGAC	6 cut(s)	188, 234, 523, 539, 708, 895
FatI	CATG	6 cut(s)	7, 153, 516, 1024, 1131, 1254
FauI	CCCGC	1 cut(s)	548
FbaI	TGATCA	1 cut(s)	888
FblI	GTMKAC	1 cut(s)	636
FokI	GGATG	4 cut(s)	449, 923, 1089, 1271
FriOI	GRGCYC	2 cut(s)	558, 750
FspBI	CTAG	1 cut(s)	995
GlaI	GCGC	3 cut(s)	229, 427, 837
GsaI	CCCAGC	1 cut(s)	304
GsuI	CTGGAG	2 cut(s)	82, 734
HaeII	RGCGCY	1 cut(s)	429
HapII	CCGG	5 cut(s)	200, 257, 296, 348, 743
HhaI	GCGC	3 cut(s)	230, 428, 838
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	6 cut(s)	11, 157, 520, 1028, 1135, 1258
Hin6I	GCGC	3 cut(s)	228, 426, 836
HinP1I	GCGC	3 cut(s)	228, 426, 836
HindIII	AAGCTT	3 cut(s)	42, 656, 1264
HinfI	GANTC	9 cut(s)	239, 271, 277, 283, 696, 815, 1046, 1088, 1309
HpaII	CCGG	5 cut(s)	200, 257, 296, 348, 743
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188III	TCNNGA	9 cut(s)	442, 517, 622, 751, 908, 1003, 1050, 1132, 1333
Hpy8I	GTNNAC	1 cut(s)	637
Hpy99I	CGWCG	6 cut(s)	239, 434, 479, 611, 614, 719
HpyAV	CCTTC	5 cut(s)	47, 328, 397, 571, 1190
HpyCH4III	ACNGT	2 cut(s)	248, 1240
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	4 cut(s)	459, 546, 925, 1192
HpyF10VI	GCNNNNNNNGC	8 cut(s)	414, 423, 549, 600, 718, 833, 950, 977
HpyF3I	CTNAG	3 cut(s)	723, 1162, 1311
HpySE526I	ACGT	1 cut(s)	714
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	6 cut(s)	11, 157, 520, 1028, 1135, 1258
HspAI	GCGC	3 cut(s)	228, 426, 836
KasI	GGCGCC	1 cut(s)	425
KroI	GCCGGC	1 cut(s)	347
KroNI	GCCGGC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	888
Kzo9I	GATC	5 cut(s)	396, 519, 627, 888, 1052
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	5 cut(s)	309, 572, 594, 753, 941
Lsp1109I	GCAGC	4 cut(s)	323, 443, 530, 909
LweI	GCATC	4 cut(s)	378, 435, 555, 612
MaeI	CTAG	1 cut(s)	995
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	1 cut(s)	1007
MalI	GATC	5 cut(s)	398, 521, 629, 890, 1054
MbiI	CCGCTC	1 cut(s)	567
MboI	GATC	5 cut(s)	396, 519, 627, 888, 1052
MboII	GAAGA	7 cut(s)	281, 391, 442, 622, 637, 1243, 1355
MflI	RGATCY	3 cut(s)	396, 627, 1052
MhlI	GDGCHC	3 cut(s)	558, 735, 750
MlsI	TGGCCA	1 cut(s)	1224
MluCI	AATT	5 cut(s)	194, 640, 762, 1181, 1327
MluNI	TGGCCA	1 cut(s)	1224
Mly113I	GGCGCC	1 cut(s)	426
MlyI	GAGTC	5 cut(s)	233, 271, 277, 690, 1303
MmeI	TCCRAC	4 cut(s)	246, 299, 305, 412
Mox20I	TGGCCA	1 cut(s)	1224
MroNI	GCCGGC	1 cut(s)	347
MroXI	GAANNNNTTC	1 cut(s)	629
MscI	TGGCCA	1 cut(s)	1224
MseI	TTAA	2 cut(s)	104, 212
Msp20I	TGGCCA	1 cut(s)	1224
MspA1I	CMGCKG	3 cut(s)	336, 456, 543
MspI	CCGG	5 cut(s)	200, 257, 296, 348, 743
MspR9I	CCNGG	7 cut(s)	200, 257, 296, 326, 743, 744, 820
MssI	GTTTAAAC	1 cut(s)	105
MvaI	CCWGG	2 cut(s)	326, 820
MvnI	CGCG	5 cut(s)	393, 408, 423, 597, 836
MwoI	GCNNNNNNNGC	8 cut(s)	414, 423, 549, 600, 718, 833, 950, 977
NaeI	GCCGGC	1 cut(s)	349
NarI	GGCGCC	1 cut(s)	426
NciI	CCSGG	5 cut(s)	200, 257, 296, 743, 744
NdeII	GATC	5 cut(s)	396, 519, 627, 888, 1052
NgoMIV	GCCGGC	1 cut(s)	347
NheI	GCTAGC	1 cut(s)	994
NlaIII	CATG	6 cut(s)	11, 157, 520, 1028, 1135, 1258
NlaIV	GGNNCC	6 cut(s)	204, 352, 427, 487, 749, 1054
NmeAIII	GCCGAG	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	1007
PaeR7I	CTCGAG	1 cut(s)	1003
PagI	TCATGA	2 cut(s)	516, 1131
PciSI	GCTCTTC	1 cut(s)	455
PdiI	GCCGGC	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	4 cut(s)	271, 815, 1046, 1088
PflFI	GACNNNGTC	1 cut(s)	1289
PleI	GAGTC	5 cut(s)	233, 271, 277, 690, 1303
PluTI	GGCGCC	1 cut(s)	429
PmeI	GTTTAAAC	1 cut(s)	105
PpsI	GAGTC	5 cut(s)	233, 271, 277, 690, 1303
PsiI	TTATAA	1 cut(s)	1326
Psp124BI	GAGCTC	1 cut(s)	558
Psp6I	CCWGG	2 cut(s)	324, 818
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	2 cut(s)	324, 818
PspN4I	GGNNCC	6 cut(s)	204, 352, 427, 487, 749, 1054
PsuI	RGATCY	3 cut(s)	396, 627, 1052
PsyI	GACNNNGTC	1 cut(s)	1289
PvuII	CAGCTG	1 cut(s)	336
RsaI	GTAC	2 cut(s)	87, 1208
RsaNI	GTAC	2 cut(s)	86, 1207
SacI	GAGCTC	1 cut(s)	558
SapI	GCTCTTC	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	104, 212
Sau3AI	GATC	5 cut(s)	396, 519, 627, 888, 1052
SchI	GAGTC	5 cut(s)	233, 271, 277, 690, 1303
ScrFI	CCNGG	7 cut(s)	200, 257, 296, 326, 743, 744, 820
SduI	GDGCHC	3 cut(s)	558, 735, 750
SfaNI	GCATC	4 cut(s)	378, 435, 555, 612
SfcI	CTRYAG	1 cut(s)	16
SfoI	GGCGCC	1 cut(s)	427
Sfr274I	CTCGAG	1 cut(s)	1003
SinI	GGWCC	5 cut(s)	202, 328, 439, 619, 792
SlaI	CTCGAG	1 cut(s)	1003
SmaI	CCCGGG	1 cut(s)	744
SmlI	CTYRAG	1 cut(s)	1003
SmoI	CTYRAG	1 cut(s)	1003
Sse9I	AATT	5 cut(s)	194, 640, 762, 1181, 1327
SspDI	GGCGCC	1 cut(s)	425
SspI	AATATT	1 cut(s)	1322
SspMI	CTAG	1 cut(s)	995
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	7 cut(s)	198, 255, 294, 324, 741, 742, 818
StyI	CCWWGG	3 cut(s)	690, 1056, 1148
TaaI	ACNGT	2 cut(s)	248, 1240
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	4 cut(s)	771, 785, 1004, 1273
TasI	AATT	5 cut(s)	194, 640, 762, 1181, 1327
TatI	WGTACW	2 cut(s)	85, 1206
TauI	GCSGC	6 cut(s)	347, 408, 426, 483, 486, 597
TfiI	GAWTC	4 cut(s)	271, 815, 1046, 1088
Tru1I	TTAA	2 cut(s)	104, 212
Tru9I	TTAA	2 cut(s)	104, 212
TscAI	CASTG	2 cut(s)	1179, 1243
TseFI	GTSAC	1 cut(s)	1007
TseI	GCWGC	4 cut(s)	336, 456, 543, 922
Tsp45I	GTSAC	1 cut(s)	1007
TspDTI	ATGAA	5 cut(s)	162, 906, 1107, 1120, 1148
TspMI	CCCGGG	1 cut(s)	742
TspRI	CASTG	2 cut(s)	1179, 1243
Tth111I	GACNNNGTC	1 cut(s)	1289
VpaK11BI	GGWCC	5 cut(s)	202, 328, 439, 619, 792
XapI	RAATTY	2 cut(s)	762, 1181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	802
XhoI	CTCGAG	1 cut(s)	1003
XmaI	CCCGGG	1 cut(s)	742
XmiI	GTMKAC	1 cut(s)	636
XmnI	GAANNNNTTC	1 cut(s)	629
XspI	CTAG	1 cut(s)	995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.