Rorug06G0234300

WD repeat domain phosphoinositide-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001367
Physical Location & Seq
Reverse (-)
37674365 .. 37677382
3018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0234300.1

Sequence Viewer

Length: 2250 bp
ATGACCAACTTGGTCATTGAGAGAATGATGATTCTGGGTAATGCAAATGGTTTCATATATAAACTCATGCCCCGAGCTCGTATTATTCTTCGTCTACTCACCACCATCCCATTACCCAATCACGCATCCCCACAGCACTCTTGTTTTGCCTCAACTTCAAAACCCGGCAGTCATGCCAAAGACGTAGACCTTTTTTCACTGAACAGAAGGATCTCCCATTTGATCCGAACTGGTCAGATAGAGCAAGCCAGGGAAGCCTTTGACGAGATGAAGCAACGGAATATCGTAACTTGGAATTCAATGATAACCGGGTATGTGAAACGCCGAGAGATGGCCAAGGCCCGGAAGCTGTTCGATGAAATGCCTGAGAGAGATGTTGTGTCCTGGAATTTGATGATGTCCGGGTACGTTTCGTGCCGCGGAAGTCGTCGGTATGTTGAGGAGGGGAGGAGTTTGTTTGATCAGATGCCCGTGAGGGACTGTGTTTCTTGGAACACGATGATCAGTGGGTATGCCAAGAATGGGAGGATGGGGGAGGCATTGCGGCTTTTCGATGCCATGCCGCAGAGGAGTGTTGTTTCTTGGAATGCAATGGTTACCGGTTTCTTACAGAATGGTGATGTTGCGCGTGCGATTGAGTTTTTCGAGAGAATGCCGCAGAGGGATGGGGCTTCTCTTAGCGCACTCGTGTCGGGGCTTATTCAGAATGGTGAGCTGGATGAAGCTGCGAGGATTGTTGGCGAATGTGGGAAGAGGGATGAGGAGGGGGTGGAAGATTTGGTGGATGCTTATAATACGTTGGTTGCTGGTTATGGTCAGAGAGGAAGGGTTGAAGAGGCTCGGCGCCTTTTTGATCAAATACCATTTCGTCGTGAGAAGGGGAATGAGGACAGTGGGAGGTTTGAGAGGAATGTTGTATCGTGGAATTCTATGATTATGTGCTATGTGAAAACAGGAAATATTGTTTCTGCTAGAGAACTTTTTGACCAAATGATAGAACGAGATACCTTTTCGTGGAATACCATGATCAGCGGCTATGTTCATATGTCAGATATGGAAGAGGCTGCCAATCTCTTTCGTAGAATGCCAAATCCTGATACACTGTCATGGAATGCAATGATCTTAGGGTATGCCCAGGTTGGGCGTTTAAAACTGGCTCATGATTTTTTCGAGAGGATGCCACACAAGAGTCTAGTCTCTTGGAACTCCATGATAGCAGGGTATGAGAAAAATGAGGACTTTATGGGTGGAGTTAAGCTTTTCTCTCAGATGCAACTAGAAGGAGAGAAACCTGATAGACACACTTTATCATCAGTTCTTAGTGTGAGTACTGGGTTAGTGGATCTGCATCTAGGCATGCAGATTCATCAGCTGGTCACGAAGACAGTTATTGCAGATTTGCCAATAAACAACTCTCTTATAACTATGTATTCACGATGTGGTGCTATCAAAGAGGCAGAAACAATTTTTGATGAGATGAAACAGCAGAAAGATGTGATCTCCTGGAATGCAATGATTGGGGGCTATGCATCTCATGGTTTTGCTGCAGAGGCTTTAGGACTTTTTTGTTTCATGAAGAGGTCAAGGGTGCAACCTACATATATAACATTTATTGCAGTTTTAAATGCATGTGCTCATGCAGGATTAGTTGAAGAAGGCCGGAGTCAATTTAAATCCATGATTAGTGAATTTGGCATTGAGCCACGTATCGAACACTATGCCTCCCTTGTGGACATCATTGGTCGGCATGGGCAGCTTGAGGAGGCTCACGATTTGATCAATAGTATGCCATTTGAACCTGATAAGGCTGTGTGGGGAGCATTATTAGGTGCTTGTAGAGTGCATAACAATGTAGAGCTGGCAAAAGTTGCAGCTGAAGCATTAACAAGACTTGAACCTGAAAGCTCAGGTCCGTATGTATTGTTGTACAATATGTATGCTGATGCCGGACTATGGGATGAAGCAGCAGCTGTGAGATCGCTGATGGATGAAAACAAGATAACAAAGCATGCTGCCTATAGTAGGGTTGAATTTTCAGTATTCCAAGTCCTTCCTCACTTGCCAACTCCATTGAGAACCTTTACTGTTCACAGAATCGACCATGACAATACATCAGCCTGGAGAAAATATGACTCAATTACTGCAAGTCTGCAAGGGTGCTCTTTAAGCAGTTTGGCTGCTCAGAAAGGTTTATCAGAACTTGCACCATTGCTTAAAGTGGTTATGTTTGCACCAGCTGAAAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000407 GO:0000422 GO:0001101 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007568 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0009991 GO:0010035 GO:0010150 GO:0010506 GO:0010508 GO:0016020 GO:0016043 GO:0016236 GO:0019222 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031667 GO:0032266 GO:0032501 GO:0032502 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0061726 GO:0061919 GO:0065007 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0090693 GO:0098542 GO:0098805 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901981 GO:1902936 GO:1903008 GO:1905037
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

749

Amino Acids

84.41

Weight (kDa)

6.49

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 93 - 125 4.4e-09 PPR repeat family
PPR PF01535 96 - 125 2.8e-08 PPR repeat
PPR_1 PF12854 159 - 187 1.8e-08 PPR repeat
PPR_2 PF13041 160 - 192 1.7e-08 PPR repeat family
PPR PF01535 162 - 190 1.4e-09 PPR repeat
PPR_2 PF13041 303 - 334 2.3e-06 PPR repeat family
PPR PF01535 306 - 334 6.4e-08 PPR repeat
PPR PF01535 337 - 362 1.7e-06 PPR repeat
PPR_2 PF13041 397 - 440 5.2e-08 PPR repeat family
PPR_2 PF13041 497 - 546 1.6e-09 PPR repeat family
PPR PF01535 500 - 529 1.5e-06 PPR repeat
E_motif PF20431 615 - 677 4.1e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 792, 1421
AccB1I GGYRCC 1 cut(s) 843
AccI GTMKAC 2 cut(s) 94, 186
AccII CGCG 2 cut(s) 420, 628
AciI CCGC 6 cut(s) 418, 420, 544, 563, 656, 1032
AclWI GGATC 3 cut(s) 217, 218, 1350
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 5 cut(s) 295, 388, 925, 1688, 2030
AcuI CTGAAG 1 cut(s) 1896
AcyI GRCGYC 1 cut(s) 844
AdeI CACNNNGTG 1 cut(s) 1439
AfaI GTAC 3 cut(s) 407, 1330, 1928
AfiI CCNNNNNNNGG 7 cut(s) 331, 342, 522, 1014, 1140, 1953, 2022
AgeI ACCGGT 1 cut(s) 599
AgsI TTSAA 7 cut(s) 159, 300, 833, 1652, 1796, 1895, 2030
AjnI CCWGG 5 cut(s) 248, 383, 1134, 1502, 2117
Alw21I GWGCWC 3 cut(s) 79, 1636, 2162
Alw26I GTCTC 1 cut(s) 1201
AlwI GGATC 3 cut(s) 217, 218, 1350
AlwNI CAGNNNCTG 1 cut(s) 1970
Ama87I CYCGRG 1 cut(s) 72
AoxI GGCC 3 cut(s) 333, 339, 1657
ApeKI GCWGC 9 cut(s) 725, 1064, 1544, 1753, 1871, 1964, 1967, 2012, 2177
ApoI RAATTY 5 cut(s) 295, 388, 925, 1688, 2030
AsiGI ACCGGT 1 cut(s) 599
Asp700I GAANNNNTTC 1 cut(s) 350
AspLEI GCGC 3 cut(s) 628, 683, 846
AspS9I GGNCC 2 cut(s) 340, 1910
AsuC2I CCSGG 4 cut(s) 165, 310, 343, 403
AsuHPI GGTGA 3 cut(s) 91, 629, 722
AvaI CYCGRG 1 cut(s) 72
AvaII GGWCC 1 cut(s) 1910
BalI TGGCCA 1 cut(s) 335
BanI GGYRCC 1 cut(s) 843
BanII GRGCYC 1 cut(s) 79
BauI CACGAG 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 1388
Bbv12I GWGCWC 3 cut(s) 79, 1636, 2162
BbvI GCAGC 9 cut(s) 712, 1051, 1531, 1765, 1883, 1976, 1979, 1999, 2164
BccI CCATC 5 cut(s) 113, 325, 523, 659, 1978
BcgI CGANNNNNNTGC 4 cut(s) 672, 706, 1700, 1734
BciT130I CCWGG 5 cut(s) 250, 385, 1136, 1504, 2119
BclI TGATCA 5 cut(s) 460, 501, 853, 1026, 1776
BcnI CCSGG 4 cut(s) 165, 310, 343, 403
BcoDI GTCTC 1 cut(s) 1201
BfaI CTAG 4 cut(s) 972, 1193, 1277, 1352
BfmI CTRYAG 2 cut(s) 1545, 2017
BfoI RGCGCY 1 cut(s) 847
BmcAI AGTACT 1 cut(s) 1330
Bme1390I CCNGG 9 cut(s) 165, 250, 310, 343, 385, 403, 1136, 1504, 2119
Bme18I GGWCC 1 cut(s) 1910
BmeT110I CYCGRG 1 cut(s) 72
BmgT120I GGNCC 2 cut(s) 340, 1910
BmiI GGNNCC 1 cut(s) 845
BmrFI CCNGG 9 cut(s) 165, 250, 310, 343, 385, 403, 1136, 1504, 2119
BmrI ACTGGG 1 cut(s) 1341
BmsI GCATC 9 cut(s) 134, 456, 544, 775, 1167, 1260, 1357, 1538, 1933
BmuI ACTGGG 1 cut(s) 1341
BpiI GAAGAC 1 cut(s) 1388
BpmI CTGGAG 1 cut(s) 2140
Bpu10I CCTNAGC 1 cut(s) 1906
BpuEI CTTGAG 1 cut(s) 1778
BpuMI CCSGG 4 cut(s) 165, 310, 343, 403
BsaAI YACGTR 1 cut(s) 1706
BsaBI GATNNNNATC 1 cut(s) 1347
BsaHI GRCGYC 1 cut(s) 844
BsaJI CCNNGG 4 cut(s) 249, 336, 418, 1134
BsaWI WCCGGW 1 cut(s) 599
BsaXI ACNNNNNCTCC 2 cut(s) 1706, 1736
Bsc4I CCNNNNNNNGG 7 cut(s) 331, 342, 522, 1014, 1140, 1953, 2022
Bse118I RCCGGY 1 cut(s) 599
Bse1I ACTGG 3 cut(s) 235, 1158, 1336
Bse3DI GCAATG 5 cut(s) 539, 597, 1122, 1518, 2207
Bse8I GATNNNNATC 1 cut(s) 1347
BseBI CCWGG 5 cut(s) 250, 385, 1136, 1504, 2119
BseDI CCNNGG 4 cut(s) 249, 336, 418, 1134
BseJI GATNNNNATC 1 cut(s) 1347
BseLI CCNNNNNNNGG 7 cut(s) 331, 342, 522, 1014, 1140, 1953, 2022
BseMI GCAATG 5 cut(s) 539, 597, 1122, 1518, 2207
BseMII CTCAG 4 cut(s) 357, 1280, 1920, 2195
BseNI ACTGG 3 cut(s) 235, 1158, 1336
BseRI GAGGAG 5 cut(s) 455, 463, 583, 776, 1775
BseXI GCAGC 9 cut(s) 712, 1051, 1531, 1765, 1883, 1976, 1979, 1999, 2164
Bsh1236I CGCG 2 cut(s) 420, 628
BshFI GGCC 3 cut(s) 335, 341, 1659
BshNI GGYRCC 1 cut(s) 843
BshTI ACCGGT 1 cut(s) 599
BsiHKAI GWGCWC 3 cut(s) 79, 1636, 2162
BsiHKCI CYCGRG 1 cut(s) 72
BsiSI CCGG 7 cut(s) 165, 309, 343, 402, 600, 1660, 1947
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 7 cut(s) 331, 342, 522, 1014, 1140, 1953, 2022
BsmAI GTCTC 1 cut(s) 1201
BsmFI GGGAC 1 cut(s) 491
BsmI GAATGC 5 cut(s) 592, 657, 1089, 1117, 1513
BsnI GGCC 3 cut(s) 335, 341, 1659
BsoBI CYCGRG 1 cut(s) 72
Bsp1286I GDGCHC 3 cut(s) 79, 1636, 2162
Bsp1407I TGTACA 1 cut(s) 1926
BspACI CCGC 6 cut(s) 418, 420, 544, 563, 656, 1032
BspANI GGCC 3 cut(s) 335, 341, 1659
BspCNI CTCAG 4 cut(s) 358, 1279, 1919, 2194
BspFNI CGCG 2 cut(s) 420, 628
BspHI TCATGA 2 cut(s) 1159, 1572
BspLI GGNNCC 1 cut(s) 845
BspMAI CTGCAG 1 cut(s) 1549
BspPI GGATC 3 cut(s) 217, 218, 1350
BspT107I GGYRCC 1 cut(s) 843
BsrDI GCAATG 5 cut(s) 539, 597, 1122, 1518, 2207
BsrFI RCCGGY 1 cut(s) 599
BsrGI TGTACA 1 cut(s) 1926
BsrI ACTGG 3 cut(s) 235, 1158, 1336
BssAI RCCGGY 1 cut(s) 599
BssECI CCNNGG 4 cut(s) 249, 336, 418, 1134
BssNI GRCGYC 1 cut(s) 844
BssSI CACGAG 1 cut(s) 686
BssT1I CCWWGG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 686
Bst2UI CCWGG 5 cut(s) 250, 385, 1136, 1504, 2119
Bst4CI ACNGT 5 cut(s) 482, 893, 1104, 1387, 2086
Bst6I CTCTTC 4 cut(s) 746, 828, 1053, 1571
BstACI GRCGYC 1 cut(s) 844
BstAPI GCANNNNNTGC 1 cut(s) 1868
BstAUI TGTACA 1 cut(s) 1926
BstBAI YACGTR 1 cut(s) 1706
BstC8I GCNNGC 5 cut(s) 246, 630, 1358, 1860, 2010
BstDEI CTNAG 7 cut(s) 366, 677, 1123, 1266, 1319, 1906, 2181
BstDSI CCRYGG 1 cut(s) 418
BstEII GGTNACC 1 cut(s) 595
BstENI CCTNNNNNAGG 1 cut(s) 2020
BstFNI CGCG 2 cut(s) 420, 628
BstH2I RGCGCY 1 cut(s) 847
BstHHI GCGC 3 cut(s) 628, 683, 846
BstMAI GTCTC 1 cut(s) 1201
BstMWI GCNNNNNNNGC 6 cut(s) 254, 1550, 1753, 1868, 1877, 2166
BstNI CCWGG 5 cut(s) 250, 385, 1136, 1504, 2119
BstNSI RCATGY 3 cut(s) 1360, 1632, 2012
BstPI GGTNACC 1 cut(s) 595
BstSCI CCNGG 9 cut(s) 163, 248, 308, 341, 383, 401, 1134, 1502, 2117
BstSFI CTRYAG 2 cut(s) 1545, 2017
BstUI CGCG 2 cut(s) 420, 628
BstV1I GCAGC 9 cut(s) 712, 1051, 1531, 1765, 1883, 1976, 1979, 1999, 2164
BstV2I GAAGAC 1 cut(s) 1388
BstX2I RGATCY 2 cut(s) 210, 1342
BstYI RGATCY 2 cut(s) 210, 1342
BsuRI GGCC 3 cut(s) 335, 341, 1659
BtgI CCRYGG 1 cut(s) 418
BtsIMutI CAGTG 4 cut(s) 197, 511, 898, 1100
Cac8I GCNNGC 5 cut(s) 246, 630, 1358, 1860, 2010
CaiI CAGNNNCTG 1 cut(s) 1970
CciI TCATGA 2 cut(s) 1159, 1572
CfoI GCGC 3 cut(s) 628, 683, 846
Cfr10I RCCGGY 1 cut(s) 599
Cfr13I GGNCC 2 cut(s) 340, 1910
Cfr42I CCGCGG 1 cut(s) 421
Csp6I GTAC 3 cut(s) 406, 1329, 1927
CspAI ACCGGT 1 cut(s) 599
CviQI GTAC 3 cut(s) 406, 1329, 1927
DdeI CTNAG 7 cut(s) 366, 677, 1123, 1266, 1319, 1906, 2181
DinI GGCGCC 1 cut(s) 845
DraI TTTAAA 3 cut(s) 1149, 1623, 1672
DraIII CACNNNGTG 1 cut(s) 1439
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 4 cut(s) 746, 828, 1053, 1571
EarI CTCTTC 4 cut(s) 746, 828, 1053, 1571
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 1910
Eco53kI GAGCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 1896
Eco88I CYCGRG 1 cut(s) 72
Eco91I GGTNACC 1 cut(s) 595
EcoICRI GAGCTC 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 2020
EcoO65I GGTNACC 1 cut(s) 595
EcoRI GAATTC 2 cut(s) 295, 925
EcoRII CCWGG 5 cut(s) 248, 383, 1134, 1502, 2117
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 2 cut(s) 1531, 1630
EcoT38I GRGCYC 1 cut(s) 79
EgeI GGCGCC 1 cut(s) 845
EheI GGCGCC 1 cut(s) 845
ErhI CCWWGG 1 cut(s) 336
FaqI GGGAC 1 cut(s) 491
FauNDI CATATG 1 cut(s) 1044
FbaI TGATCA 5 cut(s) 460, 501, 853, 1026, 1776
FblI GTMKAC 2 cut(s) 94, 186
FriOI GRGCYC 1 cut(s) 79
FspBI CTAG 4 cut(s) 972, 1193, 1277, 1352
GlaI GCGC 3 cut(s) 627, 682, 845
GsuI CTGGAG 1 cut(s) 2140
HaeII RGCGCY 1 cut(s) 847
HaeIII GGCC 3 cut(s) 335, 341, 1659
HapII CCGG 7 cut(s) 165, 309, 343, 402, 600, 1660, 1947
HhaI GCGC 3 cut(s) 628, 683, 846
Hin1I GRCGYC 1 cut(s) 844
Hin6I GCGC 3 cut(s) 626, 681, 844
HinP1I GCGC 3 cut(s) 626, 681, 844
HindIII AAGCTT 1 cut(s) 1256
HinfI GANTC 6 cut(s) 31, 1189, 1363, 1663, 2094, 2132
HpaII CCGG 7 cut(s) 165, 309, 343, 402, 600, 1660, 1947
HphI GGTGA 3 cut(s) 91, 629, 722
Hpy166II GTNNAC 4 cut(s) 95, 187, 1732, 2089
Hpy188I TCNGA 9 cut(s) 227, 237, 465, 705, 819, 1051, 1269, 2184, 2197
Hpy188III TCNNGA 9 cut(s) 646, 872, 1094, 1160, 1171, 1378, 1434, 1573, 1769
Hpy8I GTNNAC 4 cut(s) 95, 187, 1732, 2089
Hpy99I CGWCG 2 cut(s) 432, 873
HpyAV CCTTC 6 cut(s) 201, 819, 871, 1274, 1649, 2060
HpyCH4III ACNGT 5 cut(s) 482, 893, 1104, 1387, 2086
HpyCH4IV ACGT 4 cut(s) 183, 408, 797, 1705
HpyF10VI GCNNNNNNNGC 6 cut(s) 254, 1550, 1753, 1868, 1877, 2166
HpyF3I CTNAG 7 cut(s) 366, 677, 1123, 1266, 1319, 1906, 2181
HpySE526I ACGT 4 cut(s) 183, 408, 797, 1705
Hsp92I GRCGYC 1 cut(s) 844
HspAI GCGC 3 cut(s) 626, 681, 844
KasI GGCGCC 1 cut(s) 843
Ksp22I TGATCA 5 cut(s) 460, 501, 853, 1026, 1776
KspI CCGCGG 1 cut(s) 421
LmnI GCTCC 1 cut(s) 1817
Lsp1109I GCAGC 9 cut(s) 712, 1051, 1531, 1765, 1883, 1976, 1979, 1999, 2164
LweI GCATC 9 cut(s) 134, 456, 544, 775, 1167, 1260, 1357, 1538, 1933
MaeI CTAG 4 cut(s) 972, 1193, 1277, 1352
MaeII ACGT 4 cut(s) 183, 408, 797, 1705
MaeIII GTNAC 3 cut(s) 286, 595, 1375
MboII GAAGA 8 cut(s) 80, 763, 785, 845, 1070, 1393, 1588, 1664
MflI RGATCY 2 cut(s) 210, 1342
MhlI GDGCHC 3 cut(s) 79, 1636, 2162
MlsI TGGCCA 1 cut(s) 335
MluCI AATT 8 cut(s) 295, 388, 925, 1464, 1667, 1688, 2030, 2136
MluNI TGGCCA 1 cut(s) 335
Mly113I GGCGCC 1 cut(s) 844
MlyI GAGTC 3 cut(s) 1198, 1672, 2126
Mox20I TGGCCA 1 cut(s) 335
Mph1103I ATGCAT 2 cut(s) 1531, 1630
MroXI GAANNNNTTC 1 cut(s) 350
MscI TGGCCA 1 cut(s) 335
MseI TTAA 7 cut(s) 1148, 1254, 1622, 1671, 1883, 2165, 2214
MslI CAYNNNNRTG 2 cut(s) 1105, 1848
Msp20I TGGCCA 1 cut(s) 335
MspA1I CMGCKG 6 cut(s) 420, 1032, 1372, 1874, 1970, 2237
MspI CCGG 7 cut(s) 165, 309, 343, 402, 600, 1660, 1947
MspR9I CCNGG 9 cut(s) 165, 250, 310, 343, 385, 403, 1136, 1504, 2119
Mva1269I GAATGC 5 cut(s) 592, 657, 1089, 1117, 1513
MvaI CCWGG 5 cut(s) 250, 385, 1136, 1504, 2119
MvnI CGCG 2 cut(s) 420, 628
MwoI GCNNNNNNNGC 6 cut(s) 254, 1550, 1753, 1868, 1877, 2166
NarI GGCGCC 1 cut(s) 844
NciI CCSGG 4 cut(s) 165, 310, 343, 403
NdeI CATATG 1 cut(s) 1044
NlaIV GGNNCC 1 cut(s) 845
NmeAIII GCCGAG 2 cut(s) 350, 820
NmuCI GTSAC 1 cut(s) 1375
NsiI ATGCAT 2 cut(s) 1531, 1630
NspI RCATGY 3 cut(s) 1360, 1632, 2012
PaeI GCATGC 2 cut(s) 1360, 2012
PagI TCATGA 2 cut(s) 1159, 1572
PctI GAATGC 5 cut(s) 592, 657, 1089, 1117, 1513
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 3 cut(s) 31, 1363, 2094
PfoI TCCNGGA 2 cut(s) 383, 1502
PinAI ACCGGT 1 cut(s) 599
PleI GAGTC 3 cut(s) 1197, 1671, 2126
PluTI GGCGCC 1 cut(s) 847
PpsI GAGTC 3 cut(s) 1197, 1671, 2126
Ppu21I YACGTR 1 cut(s) 1706
PsiI TTATAA 2 cut(s) 792, 1421
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 5 cut(s) 248, 383, 1134, 1502, 2117
PspEI GGTNACC 1 cut(s) 595
PspGI CCWGG 5 cut(s) 248, 383, 1134, 1502, 2117
PspN4I GGNNCC 1 cut(s) 845
PspPI GGNCC 2 cut(s) 340, 1910
PstI CTGCAG 1 cut(s) 1549
PstNI CAGNNNCTG 1 cut(s) 1970
PsuI RGATCY 2 cut(s) 210, 1342
PvuII CAGCTG 4 cut(s) 1372, 1874, 1970, 2237
RsaI GTAC 3 cut(s) 407, 1330, 1928
RsaNI GTAC 3 cut(s) 406, 1329, 1927
RseI CAYNNNNRTG 2 cut(s) 1105, 1848
SacI GAGCTC 1 cut(s) 79
SacII CCGCGG 1 cut(s) 421
SaqAI TTAA 7 cut(s) 1148, 1254, 1622, 1671, 1883, 2165, 2214
Sau96I GGNCC 2 cut(s) 340, 1910
ScaI AGTACT 1 cut(s) 1330
SchI GAGTC 3 cut(s) 1198, 1672, 2126
ScrFI CCNGG 9 cut(s) 165, 250, 310, 343, 385, 403, 1136, 1504, 2119
SduI GDGCHC 3 cut(s) 79, 1636, 2162
SfaNI GCATC 9 cut(s) 134, 456, 544, 775, 1167, 1260, 1357, 1538, 1933
SfcI CTRYAG 2 cut(s) 1545, 2017
SfoI GGCGCC 1 cut(s) 845
Sfr303I CCGCGG 1 cut(s) 421
SgrBI CCGCGG 1 cut(s) 421
SinI GGWCC 1 cut(s) 1910
SmiI ATTTAAAT 1 cut(s) 1672
SmiMI CAYNNNNRTG 2 cut(s) 1105, 1848
SmlI CTYRAG 1 cut(s) 1757
SmoI CTYRAG 1 cut(s) 1757
SphI GCATGC 2 cut(s) 1360, 2012
Sse9I AATT 8 cut(s) 295, 388, 925, 1464, 1667, 1688, 2030, 2136
SsiI CCGC 6 cut(s) 418, 420, 544, 563, 656, 1032
SspDI GGCGCC 1 cut(s) 843
SspI AATATT 1 cut(s) 961
SspMI CTAG 4 cut(s) 972, 1193, 1277, 1352
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 9 cut(s) 163, 248, 308, 341, 383, 401, 1134, 1502, 2117
StyI CCWWGG 1 cut(s) 336
SwaI ATTTAAAT 1 cut(s) 1672
TaaI ACNGT 5 cut(s) 482, 893, 1104, 1387, 2086
TaiI ACGT 4 cut(s) 186, 411, 800, 1708
TaqI TCGA 6 cut(s) 354, 552, 645, 1170, 1710, 2097
TasI AATT 8 cut(s) 295, 388, 925, 1464, 1667, 1688, 2030, 2136
TatI WGTACW 2 cut(s) 1328, 1926
TauI GCSGC 5 cut(s) 420, 547, 565, 658, 1035
TfiI GAWTC 3 cut(s) 31, 1363, 2094
Tru1I TTAA 7 cut(s) 1148, 1254, 1622, 1671, 1883, 2165, 2214
Tru9I TTAA 7 cut(s) 1148, 1254, 1622, 1671, 1883, 2165, 2214
TscAI CASTG 4 cut(s) 204, 511, 898, 1107
TseFI GTSAC 1 cut(s) 1375
TseI GCWGC 9 cut(s) 725, 1064, 1544, 1753, 1871, 1964, 1967, 2012, 2177
Tsp45I GTSAC 1 cut(s) 1375
TspGWI ACGGA 2 cut(s) 292, 1902
TspRI CASTG 4 cut(s) 204, 511, 898, 1107
VpaK11BI GGWCC 1 cut(s) 1910
XagI CCTNNNNNAGG 1 cut(s) 2020
XapI RAATTY 5 cut(s) 295, 388, 925, 1688, 2030
XceI RCATGY 3 cut(s) 1360, 1632, 2012
XmiI GTMKAC 2 cut(s) 94, 186
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 4 cut(s) 972, 1193, 1277, 1352
ZrmI AGTACT 1 cut(s) 1330
Zsp2I ATGCAT 2 cut(s) 1531, 1630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.