Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001367

Physical Location & Seq

Genomic Coordinates Forward (+)

4681609 .. 4684343

Gene Structure 2735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG069500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGACCACTACCGCCTATACCTTTTCCTCACCTCCCTTCCAATTCCCCGTCCCCGATTTAATGGCCTCCGACTGCGCCCCCGACGACTCCTACTGTCCCTCCCCGGCCCAAAACCCGACTCCGACTCCGACTCCGACTCTTCCCCCGGCCCAGCTCCTCAACCTCTCCTTCAACCAGGACCACAGCTGCTTCGCCGCCGGCACCGACCTCGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGATCTTCCGCCGCGACTTCGGCCCACGCGGCGCCGTCGGACTGGTCCAGATGCTCTTCCGCTGCAACATCCTCACCATCGTCGGCGGCGGCCCCGACCCCCTCTACTCCCCCAACAAGGTCATGATCTGGGACGACCACCAGTCCCGCTGCATCGGCGAGCTCTCCTTCCGCTCCGAGGTCAAAGCCGTCAAGCTCCGCCGCGACCGCATCGTCGTCGTTCTGGTCCAGAAGATCTTCGTCTACAATTTCGCCGATTTGAAGCTTCTCCACCAGATTGAGACCATCGCCAACCCCAAGGGACTCTGCGAGGTCTCGCACGTCGGGCCTCAGGCGGTGCTCGTCTGCCCGGGGCTCCAGAAAGGTCAAATTCGGGTCGAGCATTACGGGTCGAAGCGCACCAAGTTTATTATGGCCCACGATTCCAGGCTGGCCTGCTTCGCTCTCACGCAGGACGGCAGGTTGCTGGCCACCGCCAGCAGTAAGGGGACTTTGATCAGAGTTTTCAATACTCTGGATGGTTCATTGCTGCAAGAGGTAAGGAGAGGAGCAGATAGAGCAGAGATACATAGTCTTGCTTTCTCTGCTAATGCCCAATGGCTAGCTGTCTCGAGTGACAAGGGAACTATCCATGTTTTCAATCTGAAGGTTGATTCAGGATCCTTGGGGAATATCAGTCCATCAGAATCCAGTCCTCCTCATCCATCAGGCGTTTCATCTCTCTCTTTCATGAAAGGTAATATAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

330

Amino Acids

36.09

Weight (kDa)

8.56

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PROPPIN	PF21032	54 - 300	9.3e-34	PROPPIN
Beta-prop_THOC3	PF25174	120 - 297	9e-14	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	149 - 325	7e-08	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	154 - 298	4.7e-08	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	201 - 307	5.5e-08	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	201 - 297	1.7e-07	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	215 - 296	9.8e-08	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	215 - 299	5.4e-06	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	220 - 297	1.9e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62770 AT3G62770
fragaria_vesca	FvH4_2g25170 FvH4_6g06350 FvH4_6g06350 FvH4_6g06350 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370
malus_domestica	MD03G1283100.v1.1 MD04G1202000.v1.1 MD11G1303400.v1.1 MD12G1216000.v1.1 MD12G1216100.v1.1
prunus_persica	Prupe.6G322300_v2.0.a1 Prupe.8G256500_v2.0.a1
pyrus_communis	pycom03g22400 pycom04g17820 pycom11g26510 pycom12g20160
rosa_chinensis	RchiOBHm_Chr3g0455431 RchiOBHm_Chr3g0455461 RchiOBHm_Chr6g0293291
rosa_laevigata	RLG00000011961 RLG00000025360 RLG00000025363
rosa_multiflora	Rmu_sc0003728.1_g000001 Rmu_sc0008350.1_g000001 Rmu_ssc0000162.1_g000036
rosa_roxburghii	Rroxscaffold_6G00424260 Rroxscaffold_6G00424290 Rroxscaffold_7G00174280
rosa_rugosa	Rorug03G0007500 Rorug03G0007800 Rorug06G0234300
rosa_samantha	Rh2AG090700 Rh3AG066800 Rh3AG067200 Rh3BG069200 Rh3BG069500 Rh3CG067600 Rh3CG068000 Rh3DG069200 Rh3DG069500 Rh5BG179700 Rh6AG347100 Rh6BG354400 Rh6CG214700 Rh6DG204600
rosa_wichuraiana	Rw3G005280 Rw3G005310 Rw6G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	693
AccB1I	GGYRCC	2 cut(s)	200, 275
AccBSI	CCGCTC	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	4 cut(s)	243, 258, 273, 447
AclWI	GGATC	2 cut(s)	897, 910
AcoI	YGGCCR	1 cut(s)	711
AcsI	RAATTY	1 cut(s)	612
AcuI	CTGAAG	1 cut(s)	908
AcyI	GRCGYC	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	361, 421
AgsI	TTSAA	4 cut(s)	172, 505, 751, 883
AhdI	GACNNNNNGTC	1 cut(s)	385
AjiI	CACGTC	1 cut(s)	565
AjnI	CCWGG	2 cut(s)	174, 668
AluBI	AGCT	6 cut(s)	154, 186, 406, 439, 508, 848
AluI	AGCT	6 cut(s)	154, 186, 406, 439, 508, 848
Alw21I	GWGCWC	2 cut(s)	408, 585
Alw26I	GTCTC	3 cut(s)	518, 562, 856
AlwI	GGATC	2 cut(s)	897, 910
Ama87I	CYCGRG	2 cut(s)	592, 853
AoxI	GGCC	9 cut(s)	63, 105, 147, 265, 334, 569, 657, 675, 711
ApeKI	GCWGC	4 cut(s)	186, 306, 393, 772
ApoI	RAATTY	1 cut(s)	612
Asp700I	GAANNNNTTC	1 cut(s)	479
AspLEI	GCGC	3 cut(s)	77, 278, 642
AspS9I	GGNCC	9 cut(s)	106, 148, 178, 266, 289, 335, 469, 569, 658
AsuC2I	CCSGG	4 cut(s)	104, 146, 593, 594
AsuHPI	GGTGA	2 cut(s)	21, 310
AsuNHI	GCTAGC	1 cut(s)	844
AvaI	CYCGRG	2 cut(s)	592, 853
AvaII	GGWCC	3 cut(s)	178, 289, 469
AxyI	CCTNAGG	1 cut(s)	573
BalI	TGGCCA	1 cut(s)	713
BamHI	GGATCC	1 cut(s)	902
BanI	GGYRCC	2 cut(s)	200, 275
BanII	GRGCYC	2 cut(s)	408, 600
Bbv12I	GWGCWC	2 cut(s)	408, 585
BbvI	GCAGC	4 cut(s)	173, 293, 380, 759
BccI	CCATC	5 cut(s)	329, 536, 755, 931, 955
BceAI	ACGGC	3 cut(s)	263, 416, 715
BcgI	CGANNNNNNTGC	4 cut(s)	190, 224, 442, 476
BciT130I	CCWGG	2 cut(s)	176, 670
BclI	TGATCA	1 cut(s)	738
BcnI	CCSGG	4 cut(s)	104, 146, 593, 594
BcoDI	GTCTC	3 cut(s)	518, 562, 856
BfaI	CTAG	1 cut(s)	845
BfoI	RGCGCY	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	693
BglI	GCCNNNNNGGC	1 cut(s)	273
BglII	AGATCT	2 cut(s)	246, 477
Bme1390I	CCNGG	6 cut(s)	104, 146, 176, 593, 594, 670
Bme18I	GGWCC	3 cut(s)	178, 289, 469
BmeRI	GACNNNNNGTC	1 cut(s)	385
BmeT110I	CYCGRG	2 cut(s)	592, 853
BmgBI	CACGTC	1 cut(s)	565
BmgT120I	GGNCC	9 cut(s)	106, 148, 178, 266, 289, 335, 469, 569, 658
BmiI	GGNNCC	5 cut(s)	202, 277, 337, 599, 904
BmrFI	CCNGG	6 cut(s)	104, 146, 176, 593, 594, 670
BmsI	GCATC	4 cut(s)	228, 285, 405, 462
BmtI	GCTAGC	1 cut(s)	848
BpmI	CTGGAG	1 cut(s)	584
BpuMI	CCSGG	4 cut(s)	104, 146, 593, 594
BsaHI	GRCGYC	1 cut(s)	276
BsaI	GGTCTC	2 cut(s)	518, 562
BsaJI	CCNNGG	8 cut(s)	102, 144, 208, 420, 540, 592, 593, 906
BsaXI	ACNNNNNCTCC	6 cut(s)	83, 109, 113, 115, 139, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 421
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	3 cut(s)	291, 385, 933
Bse21I	CCTNAGG	1 cut(s)	573
Bse3DI	GCAATG	1 cut(s)	767
BseBI	CCWGG	2 cut(s)	176, 670
BseDI	CCNNGG	8 cut(s)	102, 144, 208, 420, 540, 592, 593, 906
BseGI	GGATG	3 cut(s)	312, 766, 943
BseLI	CCNNNNNNNGG	2 cut(s)	361, 421
BseMI	GCAATG	1 cut(s)	767
BseMII	CTCAG	1 cut(s)	587
BseNI	ACTGG	3 cut(s)	291, 385, 933
BseRI	GAGGAG	3 cut(s)	146, 804, 930
BseXI	GCAGC	4 cut(s)	173, 293, 380, 759
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	4 cut(s)	243, 258, 273, 447
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	9 cut(s)	65, 107, 149, 267, 336, 571, 659, 677, 713
BshNI	GGYRCC	2 cut(s)	200, 275
BsiEI	CGRYCG	1 cut(s)	451
BsiHKAI	GWGCWC	2 cut(s)	408, 585
BsiHKCI	CYCGRG	2 cut(s)	592, 853
BsiSI	CCGG	4 cut(s)	104, 146, 198, 593
BslFI	GGGAC	6 cut(s)	35, 81, 373, 389, 558, 745
BslI	CCNNNNNNNGG	2 cut(s)	361, 421
BsmAI	GTCTC	3 cut(s)	518, 562, 856
BsmFI	GGGAC	6 cut(s)	35, 81, 373, 389, 558, 745
BsnI	GGCC	9 cut(s)	65, 107, 149, 267, 336, 571, 659, 677, 713
Bso31I	GGTCTC	2 cut(s)	518, 562
BsoBI	CYCGRG	2 cut(s)	592, 853
Bsp1286I	GDGCHC	3 cut(s)	408, 585, 600
Bsp143I	GATC	5 cut(s)	246, 369, 477, 738, 902
BspANI	GGCC	9 cut(s)	65, 107, 149, 267, 336, 571, 659, 677, 713
BspCNI	CTCAG	1 cut(s)	586
BspFNI	CGCG	4 cut(s)	243, 258, 273, 447
BspHI	TCATGA	2 cut(s)	366, 972
BspLI	GGNNCC	5 cut(s)	202, 277, 337, 599, 904
BspMI	ACCTGC	1 cut(s)	693
BspOI	GCTAGC	1 cut(s)	848
BspPI	GGATC	2 cut(s)	897, 910
BspQI	GCTCTTC	1 cut(s)	305
BspT107I	GGYRCC	2 cut(s)	200, 275
BspTNI	GGTCTC	2 cut(s)	518, 562
BsrBI	CCGCTC	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	767
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	3 cut(s)	291, 385, 933
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	8 cut(s)	102, 144, 208, 420, 540, 592, 593, 906
BssMI	GATC	5 cut(s)	246, 369, 477, 738, 902
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	2 cut(s)	540, 906
Bst2UI	CCWGG	2 cut(s)	176, 670
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	2 cut(s)	144, 305
BstACI	GRCGYC	1 cut(s)	276
BstC8I	GCNNGC	7 cut(s)	199, 404, 675, 679, 711, 721, 846
BstDEI	CTNAG	1 cut(s)	573
BstF5I	GGATG	3 cut(s)	312, 766, 943
BstFNI	CGCG	4 cut(s)	243, 258, 273, 447
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	3 cut(s)	77, 278, 642
BstKTI	GATC	5 cut(s)	249, 372, 480, 741, 905
BstMAI	GTCTC	3 cut(s)	518, 562, 856
BstMBI	GATC	5 cut(s)	246, 369, 477, 738, 902
BstMCI	CGRYCG	1 cut(s)	451
BstMWI	GCNNNNNNNGC	8 cut(s)	264, 273, 399, 450, 568, 683, 800, 827
BstNI	CCWGG	2 cut(s)	176, 670
BstSCI	CCNGG	6 cut(s)	102, 144, 174, 591, 592, 668
BstUI	CGCG	4 cut(s)	243, 258, 273, 447
BstV1I	GCAGC	4 cut(s)	173, 293, 380, 759
BstX2I	RGATCY	3 cut(s)	246, 477, 902
BstYI	RGATCY	3 cut(s)	246, 477, 902
Bsu36I	CCTNAGG	1 cut(s)	573
BsuRI	GGCC	9 cut(s)	65, 107, 149, 267, 336, 571, 659, 677, 713
BtgZI	GCGATG	1 cut(s)	514
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	3 cut(s)	312, 766, 943
BveI	ACCTGC	1 cut(s)	693
Cac8I	GCNNGC	7 cut(s)	199, 404, 675, 679, 711, 721, 846
CciI	TCATGA	2 cut(s)	366, 972
CfoI	GCGC	3 cut(s)	77, 278, 642
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	9 cut(s)	106, 148, 178, 266, 289, 335, 469, 569, 658
Cfr9I	CCCGGG	1 cut(s)	592
CviAII	CATG	3 cut(s)	367, 875, 973
DdeI	CTNAG	1 cut(s)	573
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	5 cut(s)	248, 371, 479, 740, 904
DpnII	GATC	5 cut(s)	246, 369, 477, 738, 902
DrdI	GACNNNNNNGTC	1 cut(s)	455
DriI	GACNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	711
Eam1104I	CTCTTC	2 cut(s)	144, 305
Eam1105I	GACNNNNNGTC	1 cut(s)	385
EarI	CTCTTC	2 cut(s)	144, 305
EciI	GGCGGA	2 cut(s)	242, 431
Ecl136II	GAGCTC	1 cut(s)	406
Eco130I	CCWWGG	2 cut(s)	540, 906
Eco24I	GRGCYC	2 cut(s)	408, 600
Eco31I	GGTCTC	2 cut(s)	518, 562
Eco47I	GGWCC	3 cut(s)	178, 289, 469
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	908
Eco81I	CCTNAGG	1 cut(s)	573
Eco88I	CYCGRG	2 cut(s)	592, 853
EcoICRI	GAGCTC	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	174, 668
EcoT14I	CCWWGG	2 cut(s)	540, 906
EcoT38I	GRGCYC	2 cut(s)	408, 600
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
ErhI	CCWWGG	2 cut(s)	540, 906
FaeI	CATG	3 cut(s)	370, 878, 976
FaiI	YATR	7 cut(s)	18, 368, 656, 813, 876, 974, 986
FaqI	GGGAC	6 cut(s)	35, 81, 373, 389, 558, 745
FatI	CATG	3 cut(s)	366, 874, 972
FauI	CCCGC	1 cut(s)	398
FbaI	TGATCA	1 cut(s)	738
FblI	GTMKAC	1 cut(s)	486
FokI	GGATG	3 cut(s)	299, 773, 930
FriOI	GRGCYC	2 cut(s)	408, 600
FspBI	CTAG	1 cut(s)	845
GlaI	GCGC	3 cut(s)	76, 277, 641
GsaI	CCCAGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	584
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	9 cut(s)	65, 107, 149, 267, 336, 571, 659, 677, 713
HapII	CCGG	4 cut(s)	104, 146, 198, 593
HhaI	GCGC	3 cut(s)	77, 278, 642
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	370, 878, 976
Hin6I	GCGC	3 cut(s)	75, 276, 640
HinP1I	GCGC	3 cut(s)	75, 276, 640
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	9 cut(s)	86, 118, 124, 130, 136, 546, 665, 896, 929
HpaII	CCGG	4 cut(s)	104, 146, 198, 593
HphI	GGTGA	2 cut(s)	21, 310
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	9 cut(s)	70, 123, 129, 135, 284, 421, 743, 888, 928
Hpy188III	TCNNGA	8 cut(s)	292, 367, 472, 601, 758, 853, 900, 973
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	6 cut(s)	86, 284, 329, 461, 464, 569
HpyAV	CCTTC	5 cut(s)	46, 178, 247, 421, 883
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	3 cut(s)	309, 396, 775
HpyF10VI	GCNNNNNNNGC	8 cut(s)	264, 273, 399, 450, 568, 683, 800, 827
HpyF3I	CTNAG	1 cut(s)	573
HpySE526I	ACGT	1 cut(s)	564
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	370, 878, 976
HspAI	GCGC	3 cut(s)	75, 276, 640
KasI	GGCGCC	1 cut(s)	275
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Ksp22I	TGATCA	1 cut(s)	738
Kzo9I	GATC	5 cut(s)	246, 369, 477, 738, 902
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	5 cut(s)	159, 422, 444, 603, 791
Lsp1109I	GCAGC	4 cut(s)	173, 293, 380, 759
LweI	GCATC	4 cut(s)	228, 285, 405, 462
MaeI	CTAG	1 cut(s)	845
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	857
MalI	GATC	5 cut(s)	248, 371, 479, 740, 904
MbiI	CCGCTC	1 cut(s)	417
MboI	GATC	5 cut(s)	246, 369, 477, 738, 902
MboII	GAAGA	5 cut(s)	131, 241, 292, 472, 487
MflI	RGATCY	3 cut(s)	246, 477, 902
MhlI	GDGCHC	3 cut(s)	408, 585, 600
MlsI	TGGCCA	1 cut(s)	713
MluCI	AATT	3 cut(s)	41, 490, 612
MluNI	TGGCCA	1 cut(s)	713
Mly113I	GGCGCC	1 cut(s)	276
MlyI	GAGTC	6 cut(s)	80, 112, 118, 124, 130, 540
MmeI	TCCRAC	5 cut(s)	93, 146, 152, 158, 262
Mox20I	TGGCCA	1 cut(s)	713
MroNI	GCCGGC	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	713
MseI	TTAA	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	713
MspA1I	CMGCKG	3 cut(s)	186, 306, 393
MspI	CCGG	4 cut(s)	104, 146, 198, 593
MspR9I	CCNGG	6 cut(s)	104, 146, 176, 593, 594, 670
MvaI	CCWGG	2 cut(s)	176, 670
MvnI	CGCG	4 cut(s)	243, 258, 273, 447
MwoI	GCNNNNNNNGC	8 cut(s)	264, 273, 399, 450, 568, 683, 800, 827
NaeI	GCCGGC	1 cut(s)	199
NarI	GGCGCC	1 cut(s)	276
NciI	CCSGG	4 cut(s)	104, 146, 593, 594
NdeII	GATC	5 cut(s)	246, 369, 477, 738, 902
NgoMIV	GCCGGC	1 cut(s)	197
NheI	GCTAGC	1 cut(s)	844
NlaIII	CATG	3 cut(s)	370, 878, 976
NlaIV	GGNNCC	5 cut(s)	202, 277, 337, 599, 904
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	857
PaeR7I	CTCGAG	1 cut(s)	853
PagI	TCATGA	2 cut(s)	366, 972
PciSI	GCTCTTC	1 cut(s)	305
PdiI	GCCGGC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	3 cut(s)	665, 896, 929
PleI	GAGTC	6 cut(s)	80, 112, 118, 124, 130, 540
PluTI	GGCGCC	1 cut(s)	279
PpsI	GAGTC	6 cut(s)	80, 112, 118, 124, 130, 540
Psp124BI	GAGCTC	1 cut(s)	408
Psp6I	CCWGG	2 cut(s)	174, 668
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	2 cut(s)	174, 668
PspN4I	GGNNCC	5 cut(s)	202, 277, 337, 599, 904
PspPI	GGNCC	9 cut(s)	106, 148, 178, 266, 289, 335, 469, 569, 658
PsuI	RGATCY	3 cut(s)	246, 477, 902
PvuII	CAGCTG	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	408
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	59
Sau3AI	GATC	5 cut(s)	246, 369, 477, 738, 902
Sau96I	GGNCC	9 cut(s)	106, 148, 178, 266, 289, 335, 469, 569, 658
SchI	GAGTC	6 cut(s)	80, 112, 118, 124, 130, 540
ScrFI	CCNGG	6 cut(s)	104, 146, 176, 593, 594, 670
SduI	GDGCHC	3 cut(s)	408, 585, 600
SfaNI	GCATC	4 cut(s)	228, 285, 405, 462
SfoI	GGCGCC	1 cut(s)	277
Sfr274I	CTCGAG	1 cut(s)	853
SinI	GGWCC	3 cut(s)	178, 289, 469
SlaI	CTCGAG	1 cut(s)	853
SmaI	CCCGGG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	853
SmoI	CTYRAG	1 cut(s)	853
Sse9I	AATT	3 cut(s)	41, 490, 612
SspDI	GGCGCC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	845
SstI	GAGCTC	1 cut(s)	408
StyD4I	CCNGG	6 cut(s)	102, 144, 174, 591, 592, 668
StyI	CCWWGG	2 cut(s)	540, 906
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	3 cut(s)	621, 635, 854
TasI	AATT	3 cut(s)	41, 490, 612
TauI	GCSGC	6 cut(s)	197, 258, 276, 333, 336, 447
TfiI	GAWTC	3 cut(s)	665, 896, 929
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	4 cut(s)	186, 306, 393, 772
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	4 cut(s)	756, 948, 961, 989
TspMI	CCCGGG	1 cut(s)	592
VpaK11BI	GGWCC	3 cut(s)	178, 289, 469
XapI	RAATTY	1 cut(s)	612
XcmI	CCANNNNNNNNNTGG	1 cut(s)	652
XhoI	CTCGAG	1 cut(s)	853
XmaI	CCCGGG	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	1 cut(s)	845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.