Rorug03G0007500

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001367
Physical Location & Seq
Forward (+)
598944 .. 607355
8412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0007500.1

Sequence Viewer

Length: 1044 bp
ATGGGAAGAAGCATGGTTTCTCTGTCGAATTCAGTGTTGTTTCCTGTGACTACATCCAATGGCATTTCTCGGCCGGCTAGGTTTCCAAAGACGATCGATTTGTGTAGTTATAAGCAGAAGAGAGAGCCCAGAAACATTGTTTGTGCTTGTATGGCGCCTCCCCAGAACTATGAATCCTATGCAGCAAAATTCGAGGATTCATTGAAATCAGAGGATTTATCCACAGTAAGAGAACCCGAGGATGACTCTGATGTTCTGATTGAGTGCAGAGACGTCCATAAGTCATTTGGTGAGAAGGATATATTGAGAGGTGTGAGCTTCAAGATTAGACATGGCGAAGCAGTTGGAATAATTGGTCCTTCTGGCACGGGGAAATCTACAGTTTTAAAGATTATGGCAGGTCTTCTTGCGCCTGACAAGGGAGAGGTATACATTCGAGGTCGAAAGAGGGATGGTTTGATCAGCGATGAGGAGTTATCTGGTCTTCGAATTGGATTGGTGTTTCAGAGTGCTGCACTTTTTGATTCGTTGACTGTTCGTGAAAATGTTGGTTTCCTTCTGTATGAAAATTCAAGCATGCCCGAGGAACAAATTTCAAAGCTCGTGACTGATAGCTTGGCTGCTGTTGGGTTAAAGGGAGTTGAGGATCGATTACCATCGGAGCTGTCTGGTGGAATGAAGAAAAGAGTTGCATTGGCTCGATCTATAATTTGTGATACCACAAAGGAAGCCATAGAGCCAGAGGTGCTCTTATATGATGAACCAACAGCTGGACTTGATCCGATTGCATCTACTGTTGTAGAAGACCTCATCCGCTCTGTCCATACAGAAGGGCAGGCAGTGTCAGAGAAGTCTGGGCAGATTGCATCTTACGTTGTTGTAACTCACCAACATAGCACCATCAGACGAGCTGTTGACAGGTTATTGTTTCTGTATGAGGGCAAGATAGTCTGGCAAGGAATGACTGATGAATTCACAACCTCAACAAATCCAATCGTTCAACAGTTTGCATCTGGGAGCTTGGATGGCCCAATTAAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

347

Amino Acids

37.98

Weight (kDa)

5.46

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 102 - 257 8.4e-31 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 111
AatII GACGTC 1 cut(s) 276
Acc36I ACCTGC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 770
AccBSI CCGCTC 1 cut(s) 816
AccI GTMKAC 1 cut(s) 429
AciI CCGC 1 cut(s) 814
AclWI GGATC 2 cut(s) 654, 773
AcoI YGGCCR 1 cut(s) 71
AcsI RAATTY 5 cut(s) 28, 188, 568, 591, 971
AcyI GRCGYC 2 cut(s) 155, 273
AfiI CCNNNNNNNGG 2 cut(s) 419, 770
AgsI TTSAA 5 cut(s) 205, 322, 573, 597, 1001
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
AluBI AGCT 7 cut(s) 318, 601, 615, 664, 770, 911, 1020
AluI AGCT 7 cut(s) 318, 601, 615, 664, 770, 911, 1020
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 2 cut(s) 654, 773
Ama87I CYCGRG 2 cut(s) 236, 581
AoxI GGCC 2 cut(s) 71, 1027
ApeKI GCWGC 3 cut(s) 182, 512, 620
ApoI RAATTY 5 cut(s) 28, 188, 568, 591, 971
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AspLEI GCGC 2 cut(s) 157, 412
AspS9I GGNCC 2 cut(s) 356, 1028
AsuHPI GGTGA 2 cut(s) 302, 878
AsuII TTCGAA 1 cut(s) 487
AvaI CYCGRG 2 cut(s) 236, 581
AvaII GGWCC 1 cut(s) 356
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 129
BauI CACGAG 1 cut(s) 602
BbsI GAAGAC 3 cut(s) 395, 476, 810
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 3 cut(s) 194, 499, 607
BccI CCATC 4 cut(s) 446, 664, 908, 1019
BclI TGATCA 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 378
BfoI RGCGCY 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 389
BisI GCNGC 3 cut(s) 183, 513, 621
BlsI GCNGC 3 cut(s) 184, 514, 622
Bme18I GGWCC 1 cut(s) 356
BmeT110I CYCGRG 2 cut(s) 236, 581
BmgT120I GGNCC 2 cut(s) 356, 1028
BmiI GGNNCC 1 cut(s) 156
BmsI GCATC 3 cut(s) 797, 875, 1019
BpiI GAAGAC 3 cut(s) 395, 476, 810
BplI GAGNNNNNCTC 2 cut(s) 230, 262
Bpu14I TTCGAA 1 cut(s) 487
Bsa29I ATCGAT 2 cut(s) 96, 649
BsaBI GATNNNNATC 1 cut(s) 655
BsaHI GRCGYC 2 cut(s) 155, 273
BsaJI CCNNGG 2 cut(s) 237, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 419, 770
Bse118I RCCGGY 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 655
BseCI ATCGAT 2 cut(s) 96, 649
BseDI CCNNGG 2 cut(s) 237, 582
BseGI GGATG 5 cut(s) 53, 247, 457, 810, 1030
BseJI GATNNNNATC 1 cut(s) 655
BseLI CCNNNNNNNGG 2 cut(s) 419, 770
BseRI GAGGAG 1 cut(s) 485
BseX3I CGGCCG 1 cut(s) 71
BseXI GCAGC 3 cut(s) 194, 499, 607
BsgI GTGCAG 2 cut(s) 286, 498
Bsh1285I CGRYCG 2 cut(s) 74, 96
BshFI GGCC 2 cut(s) 73, 1029
BshNI GGYRCC 1 cut(s) 154
BshVI ATCGAT 2 cut(s) 96, 649
BsiEI CGRYCG 2 cut(s) 74, 96
BsiHKAI GWGCWC 1 cut(s) 750
BsiHKCI CYCGRG 2 cut(s) 236, 581
BsiSI CCGG 1 cut(s) 74
BslI CCNNNNNNNGG 2 cut(s) 419, 770
BsmAI GTCTC 1 cut(s) 264
BsmBI CGTCTC 1 cut(s) 264
BsnI GGCC 2 cut(s) 73, 1029
BsoBI CYCGRG 2 cut(s) 236, 581
Bsp119I TTCGAA 1 cut(s) 487
Bsp1286I GDGCHC 2 cut(s) 129, 750
Bsp143I GATC 5 cut(s) 93, 459, 646, 701, 778
BspACI CCGC 1 cut(s) 814
BspANI GGCC 2 cut(s) 73, 1029
BspDI ATCGAT 2 cut(s) 96, 649
BspLI GGNNCC 1 cut(s) 156
BspMI ACCTGC 1 cut(s) 389
BspPI GGATC 2 cut(s) 654, 773
BspT104I TTCGAA 1 cut(s) 487
BspT107I GGYRCC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 816
BsrFI RCCGGY 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 237, 582
BssMI GATC 5 cut(s) 93, 459, 646, 701, 778
BssNAI GTATAC 1 cut(s) 430
BssNI GRCGYC 2 cut(s) 155, 273
BssSI CACGAG 1 cut(s) 602
Bst1107I GTATAC 1 cut(s) 430
Bst2BI CACGAG 1 cut(s) 602
Bst4CI ACNGT 5 cut(s) 226, 382, 535, 796, 1005
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 2 cut(s) 155, 273
BstBI TTCGAA 1 cut(s) 487
BstC8I GCNNGC 3 cut(s) 75, 578, 837
BstF5I GGATG 5 cut(s) 53, 247, 457, 810, 1030
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 2 cut(s) 157, 412
BstKTI GATC 5 cut(s) 96, 462, 649, 704, 781
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 5 cut(s) 93, 459, 646, 701, 778
BstMCI CGRYCG 2 cut(s) 74, 96
BstMWI GCNNNNNNNGC 3 cut(s) 152, 745, 1026
BstNSI RCATGY 1 cut(s) 580
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 3 cut(s) 194, 499, 607
BstV2I GAAGAC 3 cut(s) 395, 476, 810
BstZ17I GTATAC 1 cut(s) 430
BstZI CGGCCG 1 cut(s) 71
Bsu15I ATCGAT 2 cut(s) 96, 649
BsuRI GGCC 2 cut(s) 73, 1029
BsuTUI ATCGAT 2 cut(s) 96, 649
BtgZI GCGATG 1 cut(s) 480
BtsCI GGATG 5 cut(s) 53, 247, 457, 810, 1030
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 2 cut(s) 39, 846
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 3 cut(s) 75, 578, 837
CfoI GCGC 2 cut(s) 157, 412
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 356, 1028
ClaI ATCGAT 2 cut(s) 96, 649
CviAII CATG 3 cut(s) 13, 332, 577
DinI GGCGCC 1 cut(s) 156
DpnI GATC 5 cut(s) 95, 461, 648, 703, 780
DpnII GATC 5 cut(s) 93, 459, 646, 701, 778
DraI TTTAAA 1 cut(s) 387
EaeI YGGCCR 1 cut(s) 71
EagI CGGCCG 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EclXI CGGCCG 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 356
Eco52I CGGCCG 1 cut(s) 71
Eco88I CYCGRG 2 cut(s) 236, 581
EcoRI GAATTC 2 cut(s) 28, 971
EcoT38I GRGCYC 1 cut(s) 129
EgeI GGCGCC 1 cut(s) 156
EheI GGCGCC 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 3 cut(s) 16, 335, 580
FatI CATG 3 cut(s) 12, 331, 576
FbaI TGATCA 1 cut(s) 459
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 3 cut(s) 183, 513, 621
FokI GGATG 5 cut(s) 40, 254, 464, 797, 1037
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 3 cut(s) 183, 513, 621
FspBI CTAG 1 cut(s) 78
GlaI GCGC 2 cut(s) 156, 411
GluI GCNGC 3 cut(s) 183, 513, 621
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 2 cut(s) 73, 1029
HapII CCGG 1 cut(s) 74
HhaI GCGC 2 cut(s) 157, 412
Hin1I GRCGYC 2 cut(s) 155, 273
Hin1II CATG 3 cut(s) 16, 335, 580
Hin6I GCGC 2 cut(s) 155, 410
HinP1I GCGC 2 cut(s) 155, 410
HincII GTYRAC 2 cut(s) 531, 916
HindII GTYRAC 2 cut(s) 531, 916
HinfI GANTC 4 cut(s) 173, 197, 245, 524
HpaII CCGG 1 cut(s) 74
HphI GGTGA 2 cut(s) 302, 878
Hpy166II GTNNAC 3 cut(s) 430, 531, 916
Hpy188I TCNGA 8 cut(s) 211, 250, 258, 507, 661, 783, 847, 905
Hpy188III TCNNGA 3 cut(s) 322, 539, 604
Hpy8I GTNNAC 3 cut(s) 430, 531, 916
HpyAV CCTTC 4 cut(s) 289, 369, 566, 824
HpyCH4III ACNGT 5 cut(s) 226, 382, 535, 796, 1005
HpyCH4IV ACGT 2 cut(s) 273, 873
HpyCH4V TGCA 7 cut(s) 182, 267, 515, 692, 788, 866, 1010
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 745, 1026
HpySE526I ACGT 2 cut(s) 273, 873
Hsp92I GRCGYC 2 cut(s) 155, 273
Hsp92II CATG 3 cut(s) 16, 335, 580
HspAI GCGC 2 cut(s) 155, 410
KasI GGCGCC 1 cut(s) 154
KroI GCCGGC 1 cut(s) 73
KroNI GCCGGC 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 5 cut(s) 93, 459, 646, 701, 778
LmnI GCTCC 2 cut(s) 661, 1017
Lsp1109I GCAGC 3 cut(s) 194, 499, 607
LweI GCATC 3 cut(s) 797, 875, 1019
MaeI CTAG 1 cut(s) 78
MaeII ACGT 2 cut(s) 273, 873
MaeIII GTNAC 3 cut(s) 46, 604, 880
MalI GATC 5 cut(s) 95, 461, 648, 703, 780
MbiI CCGCTC 1 cut(s) 816
MboI GATC 5 cut(s) 93, 459, 646, 701, 778
MboII GAAGA 6 cut(s) 18, 130, 395, 476, 691, 815
MhlI GDGCHC 2 cut(s) 129, 750
MluCI AATT 9 cut(s) 28, 188, 351, 489, 568, 591, 708, 971, 1032
Mly113I GGCGCC 1 cut(s) 155
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 325
MroNI GCCGGC 1 cut(s) 73
MseI TTAA 3 cut(s) 386, 632, 1035
MspA1I CMGCKG 1 cut(s) 770
MspI CCGG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 152, 745, 1026
NaeI GCCGGC 1 cut(s) 75
NarI GGCGCC 1 cut(s) 155
NdeII GATC 5 cut(s) 93, 459, 646, 701, 778
NgoMIV GCCGGC 1 cut(s) 73
NlaIII CATG 3 cut(s) 16, 335, 580
NlaIV GGNNCC 1 cut(s) 156
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 2 cut(s) 46, 604
NspI RCATGY 1 cut(s) 580
NspV TTCGAA 1 cut(s) 487
PaeI GCATGC 1 cut(s) 580
PdiI GCCGGC 1 cut(s) 75
PfeI GAWTC 3 cut(s) 173, 197, 524
PflMI CCANNNNNTGG 1 cut(s) 770
PkrI GCNGC 3 cut(s) 184, 514, 622
Ple19I CGATCG 1 cut(s) 96
PleI GAGTC 1 cut(s) 239
PluTI GGCGCC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 239
PsiI TTATAA 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 2 cut(s) 356, 1028
PvuI CGATCG 1 cut(s) 96
PvuII CAGCTG 1 cut(s) 770
SaqAI TTAA 3 cut(s) 386, 632, 1035
SatI GCNGC 3 cut(s) 183, 513, 621
Sau3AI GATC 5 cut(s) 93, 459, 646, 701, 778
Sau96I GGNCC 2 cut(s) 356, 1028
SchI GAGTC 1 cut(s) 239
SduI GDGCHC 2 cut(s) 129, 750
SfaNI GCATC 3 cut(s) 797, 875, 1019
SfcI CTRYAG 1 cut(s) 378
SfoI GGCGCC 1 cut(s) 156
SfuI TTCGAA 1 cut(s) 487
SinI GGWCC 1 cut(s) 356
SphI GCATGC 1 cut(s) 580
Sse9I AATT 9 cut(s) 28, 188, 351, 489, 568, 591, 708, 971, 1032
SsiI CCGC 1 cut(s) 814
SspDI GGCGCC 1 cut(s) 154
SspI AATATT 1 cut(s) 1040
SspMI CTAG 1 cut(s) 78
TaaI ACNGT 5 cut(s) 226, 382, 535, 796, 1005
TaiI ACGT 2 cut(s) 276, 876
TaqI TCGA 8 cut(s) 26, 96, 192, 436, 442, 487, 649, 700
TasI AATT 9 cut(s) 28, 188, 351, 489, 568, 591, 708, 971, 1032
TfiI GAWTC 3 cut(s) 173, 197, 524
Tru1I TTAA 3 cut(s) 386, 632, 1035
Tru9I TTAA 3 cut(s) 386, 632, 1035
TscAI CASTG 2 cut(s) 39, 846
TseFI GTSAC 2 cut(s) 46, 604
TseI GCWGC 3 cut(s) 182, 512, 620
Tsp45I GTSAC 2 cut(s) 46, 604
TspDTI ATGAA 6 cut(s) 186, 189, 579, 692, 774, 984
TspRI CASTG 2 cut(s) 39, 846
Van91I CCANNNNNTGG 1 cut(s) 770
VpaK11BI GGWCC 1 cut(s) 356
XapI RAATTY 5 cut(s) 28, 188, 568, 591, 971
XceI RCATGY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 1 cut(s) 78
ZraI GACGTC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.