Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001367

Physical Location & Seq

Genomic Coordinates Reverse (-)

29395678 .. 29396440

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1216000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGACCGCCGTCTCCTCCCCGCCTTTTCAATTCGTCCTTCTAGACTGGACTCCCGATTTACTCAACACACCCAACATGGCGCACCCGCAGCCTCAGTCACAGCAGCCTCCCAATTCGGCCTCCGATTCCGAACCCGGCGACTCCCACTCTCTCTCCACCCAATACCCAAGCCCAGGCCCGAACCTGAACCCGAACCAAATCCCCAAGATCCACCACCTGTCCTTCAACCAGGACCACGGCTGCTTCTCCGTCGCCACGGACTCCGGCTTCCGCGTCTACAACTGCGACCCCATCCGCGAGCTCTTACGCCGCGATTCCGGTCAGCAGGGCGTCGGAATGGTCCAAATGCTATTCCGCTACCCAATCCTCGCCCTAGTCGGCGGCGGTCCGGACCCGATTTACCCGCCCAACAAAGTCATGATGTGGGACGACGACGAGTCGCGGTGCTACGGCGAGCTCGTTTTCCGATCGGAGGTCAGAGGCGTCAGGCTCCGCGGCGACCGAATCGTCGTCGTTTTGGAGCACCAAAATCTTTCTCTACAGTATCACCGGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

186

Amino Acids

20.78

Weight (kDa)

5.73

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62770 AT3G62770
fragaria_vesca	FvH4_2g25170 FvH4_6g06350 FvH4_6g06350 FvH4_6g06350 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370
malus_domestica	MD03G1283100.v1.1 MD04G1202000.v1.1 MD11G1303400.v1.1 MD12G1216000.v1.1 MD12G1216100.v1.1
prunus_persica	Prupe.6G322300_v2.0.a1 Prupe.8G256500_v2.0.a1
pyrus_communis	pycom03g22400 pycom04g17820 pycom11g26510 pycom12g20160
rosa_chinensis	RchiOBHm_Chr3g0455431 RchiOBHm_Chr3g0455461 RchiOBHm_Chr6g0293291
rosa_laevigata	RLG00000011961 RLG00000025360 RLG00000025363
rosa_multiflora	Rmu_sc0003728.1_g000001 Rmu_sc0008350.1_g000001 Rmu_ssc0000162.1_g000036
rosa_roxburghii	Rroxscaffold_6G00424260 Rroxscaffold_6G00424290 Rroxscaffold_7G00174280
rosa_rugosa	Rorug03G0007500 Rorug03G0007800 Rorug06G0234300
rosa_samantha	Rh2AG090700 Rh3AG066800 Rh3AG067200 Rh3BG069200 Rh3BG069500 Rh3CG067600 Rh3CG068000 Rh3DG069200 Rh3DG069500 Rh5BG179700 Rh6AG347100 Rh6BG354400 Rh6CG214700 Rh6DG204600
rosa_wichuraiana	Rw3G005280 Rw3G005310 Rw6G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	506
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	5 cut(s)	273, 297, 312, 442, 495
AccIII	TCCGGA	1 cut(s)	388
AclWI	GGATC	1 cut(s)	202
AcyI	GRCGYC	2 cut(s)	330, 483
AfiI	CCNNNNNNNGG	2 cut(s)	173, 472
AgsI	TTSAA	2 cut(s)	29, 226
AhdI	GACNNNNNGTC	1 cut(s)	436
AjnI	CCWGG	2 cut(s)	172, 228
AluBI	AGCT	2 cut(s)	301, 457
AluI	AGCT	2 cut(s)	301, 457
Alw21I	GWGCWC	3 cut(s)	303, 459, 525
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	1 cut(s)	202
Aor13HI	TCCGGA	1 cut(s)	388
AoxI	GGCC	2 cut(s)	117, 175
ApeKI	GCWGC	3 cut(s)	88, 103, 240
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	5 cut(s)	176, 232, 340, 386, 391
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	4 cut(s)	232, 340, 386, 391
BanII	GRGCYC	2 cut(s)	303, 459
Bbv12I	GWGCWC	3 cut(s)	303, 459, 525
BbvI	GCAGC	3 cut(s)	100, 115, 227
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	2 cut(s)	253, 466
BciT130I	CCWGG	2 cut(s)	174, 230
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	2 cut(s)	41, 374
BfmI	CTRYAG	1 cut(s)	539
BisI	GCNGC	6 cut(s)	89, 104, 241, 310, 382, 496
BlsI	GCNGC	6 cut(s)	90, 105, 242, 311, 383, 497
Bme1390I	CCNGG	3 cut(s)	135, 174, 230
Bme18I	GGWCC	4 cut(s)	232, 340, 386, 391
BmeRI	GACNNNNNGTC	1 cut(s)	436
BmgT120I	GGNCC	5 cut(s)	176, 232, 340, 386, 391
BmiI	GGNNCC	2 cut(s)	393, 491
BmrFI	CCNGG	3 cut(s)	135, 174, 230
BoxI	GACNNNNGTC	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	135
BsaHI	GRCGYC	2 cut(s)	330, 483
BsaJI	CCNNGG	4 cut(s)	172, 235, 255, 493
BsaWI	WCCGGW	3 cut(s)	317, 388, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 472
Bse1I	ACTGG	1 cut(s)	50
BseAI	TCCGGA	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	174, 230
BseDI	CCNNGG	4 cut(s)	172, 235, 255, 493
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	173, 472
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	4
BseXI	GCAGC	3 cut(s)	100, 115, 227
Bsh1236I	CGCG	5 cut(s)	273, 297, 312, 442, 495
Bsh1285I	CGRYCG	2 cut(s)	470, 502
BshFI	GGCC	2 cut(s)	119, 177
BsiEI	CGRYCG	2 cut(s)	470, 502
BsiHKAI	GWGCWC	3 cut(s)	303, 459, 525
BsiSI	CCGG	5 cut(s)	135, 264, 318, 389, 550
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	173, 472
BsmAI	GTCTC	1 cut(s)	16
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	119, 177
Bsp1286I	GDGCHC	3 cut(s)	303, 459, 525
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	207, 467
BspANI	GGCC	2 cut(s)	119, 177
BspCNI	CTCAG	1 cut(s)	106
BspEI	TCCGGA	1 cut(s)	388
BspFNI	CGCG	5 cut(s)	273, 297, 312, 442, 495
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	393, 491
BspPI	GGATC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	4 cut(s)	172, 235, 255, 493
BssMI	GATC	2 cut(s)	207, 467
BssNI	GRCGYC	2 cut(s)	330, 483
Bst2UI	CCWGG	2 cut(s)	174, 230
Bst4CI	ACNGT	1 cut(s)	543
BstACI	GRCGYC	2 cut(s)	330, 483
BstC8I	GCNNGC	2 cut(s)	299, 455
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	3 cut(s)	235, 255, 493
BstF5I	GGATG	1 cut(s)	291
BstFNI	CGCG	5 cut(s)	273, 297, 312, 442, 495
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	210, 470
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	2 cut(s)	207, 467
BstMCI	CGRYCG	2 cut(s)	470, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	2 cut(s)	174, 230
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	133, 172, 228
BstSFI	CTRYAG	1 cut(s)	539
BstUI	CGCG	5 cut(s)	273, 297, 312, 442, 495
BstV1I	GCAGC	3 cut(s)	100, 115, 227
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	119, 177
BtgI	CCRYGG	3 cut(s)	235, 255, 493
BtsCI	GGATG	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	299, 455
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	5 cut(s)	176, 232, 340, 386, 391
Cfr42I	CCGCGG	1 cut(s)	496
CpoI	CGGWCCG	1 cut(s)	386
CseI	GACGC	3 cut(s)	262, 319, 472
CspI	CGGWCCG	1 cut(s)	386
CviAII	CATG	2 cut(s)	76, 418
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	209, 469
DpnII	GATC	2 cut(s)	207, 467
DrdI	GACNNNNNNGTC	1 cut(s)	506
DriI	GACNNNNNGTC	1 cut(s)	436
DseDI	GACNNNNNNGTC	1 cut(s)	506
Eam1105I	GACNNNNNGTC	1 cut(s)	436
Ecl136II	GAGCTC	2 cut(s)	301, 457
Eco24I	GRGCYC	2 cut(s)	303, 459
Eco47I	GGWCC	4 cut(s)	232, 340, 386, 391
Eco53kI	GAGCTC	2 cut(s)	301, 457
EcoICRI	GAGCTC	2 cut(s)	301, 457
EcoRII	CCWGG	2 cut(s)	172, 228
EcoT38I	GRGCYC	2 cut(s)	303, 459
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	2 cut(s)	79, 421
FaiI	YATR	2 cut(s)	77, 419
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	2 cut(s)	75, 417
FauI	CCCGC	3 cut(s)	27, 93, 411
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	6 cut(s)	89, 104, 241, 310, 382, 496
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	2 cut(s)	303, 459
Fsp4HI	GCNGC	6 cut(s)	89, 104, 241, 310, 382, 496
FspBI	CTAG	2 cut(s)	41, 374
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	6 cut(s)	89, 104, 241, 310, 382, 496
HaeIII	GGCC	2 cut(s)	119, 177
HapII	CCGG	5 cut(s)	135, 264, 318, 389, 550
HgaI	GACGC	3 cut(s)	262, 319, 472
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	2 cut(s)	330, 483
Hin1II	CATG	2 cut(s)	79, 421
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	7 cut(s)	49, 125, 140, 260, 314, 437, 504
HpaII	CCGG	5 cut(s)	135, 264, 318, 389, 550
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	6 cut(s)	124, 130, 335, 467, 472, 479
Hpy188III	TCNNGA	4 cut(s)	41, 53, 389, 418
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	6 cut(s)	254, 335, 434, 437, 512, 515
HpyAV	CCTTC	2 cut(s)	47, 232
HpyCH4III	ACNGT	1 cut(s)	543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	93
Hsp92I	GRCGYC	2 cut(s)	330, 483
Hsp92II	CATG	2 cut(s)	79, 421
HspAI	GCGC	1 cut(s)	80
Kpn2I	TCCGGA	1 cut(s)	388
KspI	CCGCGG	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	207, 467
LmnI	GCTCC	2 cut(s)	495, 520
Lsp1109I	GCAGC	3 cut(s)	100, 115, 227
MaeI	CTAG	2 cut(s)	41, 374
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	2 cut(s)	209, 469
MboI	GATC	2 cut(s)	207, 467
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	3 cut(s)	303, 459, 525
MluCI	AATT	2 cut(s)	29, 112
MlyI	GAGTC	4 cut(s)	43, 134, 254, 446
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	7 cut(s)	25, 102, 117, 130, 377, 466, 473
MroI	TCCGGA	1 cut(s)	388
MseI	TTAA	1 cut(s)	556
MspA1I	CMGCKG	1 cut(s)	495
MspI	CCGG	5 cut(s)	135, 264, 318, 389, 550
MspR9I	CCNGG	3 cut(s)	135, 174, 230
MvaI	CCWGG	2 cut(s)	174, 230
MvnI	CGCG	5 cut(s)	273, 297, 312, 442, 495
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	207, 467
NlaIII	CATG	2 cut(s)	79, 421
NlaIV	GGNNCC	2 cut(s)	393, 491
NmuCI	GTSAC	1 cut(s)	96
PagI	TCATGA	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PfeI	GAWTC	3 cut(s)	125, 314, 504
PkrI	GCNGC	6 cut(s)	90, 105, 242, 311, 383, 497
Ple19I	CGATCG	1 cut(s)	470
PleI	GAGTC	4 cut(s)	43, 134, 254, 445
PpsI	GAGTC	4 cut(s)	43, 134, 254, 445
PshAI	GACNNNNGTC	1 cut(s)	8
Psp124BI	GAGCTC	2 cut(s)	303, 459
Psp6I	CCWGG	2 cut(s)	172, 228
PspGI	CCWGG	2 cut(s)	172, 228
PspN4I	GGNNCC	2 cut(s)	393, 491
PspPI	GGNCC	5 cut(s)	176, 232, 340, 386, 391
PsuI	RGATCY	1 cut(s)	207
PvuI	CGATCG	1 cut(s)	470
Rsr2I	CGGWCCG	1 cut(s)	386
RsrII	CGGWCCG	1 cut(s)	386
SacI	GAGCTC	2 cut(s)	303, 459
SacII	CCGCGG	1 cut(s)	496
SaqAI	TTAA	1 cut(s)	556
SatI	GCNGC	6 cut(s)	89, 104, 241, 310, 382, 496
Sau3AI	GATC	2 cut(s)	207, 467
Sau96I	GGNCC	5 cut(s)	176, 232, 340, 386, 391
SchI	GAGTC	4 cut(s)	43, 134, 254, 446
ScrFI	CCNGG	3 cut(s)	135, 174, 230
SduI	GDGCHC	3 cut(s)	303, 459, 525
SetI	ASST	5 cut(s)	186, 219, 303, 459, 477
SfcI	CTRYAG	1 cut(s)	539
Sfr303I	CCGCGG	1 cut(s)	496
SgrBI	CCGCGG	1 cut(s)	496
SinI	GGWCC	4 cut(s)	232, 340, 386, 391
Sse9I	AATT	2 cut(s)	29, 112
SspMI	CTAG	2 cut(s)	41, 374
SstI	GAGCTC	2 cut(s)	303, 459
StyD4I	CCNGG	3 cut(s)	133, 172, 228
TaaI	ACNGT	1 cut(s)	543
TaqII	GACCGA	1 cut(s)	516
TasI	AATT	2 cut(s)	29, 112
TauI	GCSGC	3 cut(s)	312, 384, 498
TfiI	GAWTC	3 cut(s)	125, 314, 504
Tru1I	TTAA	1 cut(s)	556
Tru9I	TTAA	1 cut(s)	556
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	3 cut(s)	88, 103, 240
Tsp45I	GTSAC	1 cut(s)	96
TspGWI	ACGGA	2 cut(s)	238, 272
VpaK11BI	GGWCC	4 cut(s)	232, 340, 386, 391
XbaI	TCTAGA	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	2 cut(s)	41, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.