Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001367

Physical Location & Seq

Genomic Coordinates Reverse (-)

29397100 .. 29397560

Gene Structure 461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1216100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACCGCCGTCTCCTCCCCGCCTTTTCAATTCGTCCTTCTAGACTGGACTCCTGATTTACTCAACACACCCAACATGCCGCACCCGCAGCCTCAGTCACATCAGCCTCCCAATTCGGCCTCCGATTCCGAACCCGGCGACTCCCACTCTCTCTCCACCCAATACCCAAGCCCAGGCCCGAACCTGAACCCGAACCAAATCCCCAAGGTCCACCATCTGTCCTTCAACCAGGACCACGGCTGCTTCTCCGTCGCCACGGACTCCGGCTTCCGCGTCTACAACTGCGACCCCGTCCGCGAGCTCTTCCGCCGCGATTCCGGTCAGCGGGGCGTCGGAATGGTCCAAATGCTATTCCGCTACCAAATCCTCGCTCTAGTCGGAGGCGGTCCCGGATTTGCCTCTGCCCACTATATAGTCATCTTAAAAGTCCCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

146

Amino Acids

15.91

Weight (kDa)

6.34

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62770 AT3G62770
fragaria_vesca	FvH4_2g25170 FvH4_6g06350 FvH4_6g06350 FvH4_6g06350 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370
malus_domestica	MD03G1283100.v1.1 MD04G1202000.v1.1 MD11G1303400.v1.1 MD12G1216000.v1.1 MD12G1216100.v1.1
prunus_persica	Prupe.6G322300_v2.0.a1 Prupe.8G256500_v2.0.a1
pyrus_communis	pycom03g22400 pycom04g17820 pycom11g26510 pycom12g20160
rosa_chinensis	RchiOBHm_Chr3g0455431 RchiOBHm_Chr3g0455461 RchiOBHm_Chr6g0293291
rosa_laevigata	RLG00000011961 RLG00000025360 RLG00000025363
rosa_multiflora	Rmu_sc0003728.1_g000001 Rmu_sc0008350.1_g000001 Rmu_ssc0000162.1_g000036
rosa_roxburghii	Rroxscaffold_6G00424260 Rroxscaffold_6G00424290 Rroxscaffold_7G00174280
rosa_rugosa	Rorug03G0007500 Rorug03G0007800 Rorug06G0234300
rosa_samantha	Rh2AG090700 Rh3AG066800 Rh3AG067200 Rh3BG069200 Rh3BG069500 Rh3CG067600 Rh3CG068000 Rh3DG069200 Rh3DG069500 Rh5BG179700 Rh6AG347100 Rh6BG354400 Rh6CG214700 Rh6DG204600
rosa_wichuraiana	Rw3G005280 Rw3G005310 Rw6G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	3 cut(s)	273, 297, 312
AcyI	GRCGYC	1 cut(s)	330
AfiI	CCNNNNNNNGG	2 cut(s)	173, 324
AgsI	TTSAA	2 cut(s)	29, 226
AjnI	CCWGG	2 cut(s)	172, 228
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	16
AoxI	GGCC	2 cut(s)	117, 175
ApeKI	GCWGC	2 cut(s)	88, 240
AspS9I	GGNCC	5 cut(s)	176, 208, 232, 340, 386
AsuC2I	CCSGG	2 cut(s)	135, 390
AvaII	GGWCC	4 cut(s)	208, 232, 340, 386
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	100, 227
BccI	CCATC	1 cut(s)	222
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	2 cut(s)	174, 230
BcnI	CCSGG	2 cut(s)	135, 390
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	2 cut(s)	41, 374
BisI	GCNGC	4 cut(s)	80, 89, 241, 310
BlsI	GCNGC	4 cut(s)	81, 90, 242, 311
Bme1390I	CCNGG	4 cut(s)	135, 174, 230, 390
Bme18I	GGWCC	4 cut(s)	208, 232, 340, 386
BmgT120I	GGNCC	5 cut(s)	176, 208, 232, 340, 386
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	4 cut(s)	135, 174, 230, 390
BoxI	GACNNNNGTC	1 cut(s)	8
BpuMI	CCSGG	2 cut(s)	135, 390
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	4 cut(s)	172, 204, 235, 255
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 324
Bse1I	ACTGG	1 cut(s)	50
BseBI	CCWGG	2 cut(s)	174, 230
BseDI	CCNNGG	4 cut(s)	172, 204, 235, 255
BseLI	CCNNNNNNNGG	2 cut(s)	173, 324
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	4
BseXI	GCAGC	2 cut(s)	100, 227
Bsh1236I	CGCG	3 cut(s)	273, 297, 312
BshFI	GGCC	2 cut(s)	119, 177
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	4 cut(s)	135, 264, 318, 390
BslFI	GGGAC	2 cut(s)	372, 413
BslI	CCNNNNNNNGG	2 cut(s)	173, 324
BsmAI	GTCTC	1 cut(s)	16
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	2 cut(s)	372, 413
BsnI	GGCC	2 cut(s)	119, 177
Bsp1286I	GDGCHC	1 cut(s)	303
BspANI	GGCC	2 cut(s)	119, 177
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	3 cut(s)	273, 297, 312
BspLI	GGNNCC	1 cut(s)	388
BspQI	GCTCTTC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	4 cut(s)	172, 204, 235, 255
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	174, 230
Bst6I	CTCTTC	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	2 cut(s)	235, 255
BstFNI	CGCG	3 cut(s)	273, 297, 312
BstMAI	GTCTC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 88
BstNI	CCWGG	2 cut(s)	174, 230
BstNSI	RCATGY	1 cut(s)	79
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	4 cut(s)	133, 172, 228, 388
BstUI	CGCG	3 cut(s)	273, 297, 312
BstV1I	GCAGC	2 cut(s)	100, 227
BsuRI	GGCC	2 cut(s)	119, 177
BtgI	CCRYGG	2 cut(s)	235, 255
Cac8I	GCNNGC	1 cut(s)	299
Cfr13I	GGNCC	5 cut(s)	176, 208, 232, 340, 386
CseI	GACGC	2 cut(s)	262, 319
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	8 cut(s)	91, 106, 119, 171, 177, 240, 267, 301
CviKI_1	RGCY	8 cut(s)	91, 106, 119, 171, 177, 240, 267, 301
DdeI	CTNAG	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
EciI	GGCGGA	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	4 cut(s)	208, 232, 340, 386
Eco53kI	GAGCTC	1 cut(s)	301
EcoICRI	GAGCTC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	172, 228
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	77, 411, 413
FaqI	GGGAC	2 cut(s)	372, 413
FatI	CATG	1 cut(s)	75
FauI	CCCGC	3 cut(s)	27, 93, 318
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	4 cut(s)	80, 89, 241, 310
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	4 cut(s)	80, 89, 241, 310
FspBI	CTAG	2 cut(s)	41, 374
GluI	GCNGC	4 cut(s)	80, 89, 241, 310
HaeIII	GGCC	2 cut(s)	119, 177
HapII	CCGG	4 cut(s)	135, 264, 318, 390
HgaI	GACGC	2 cut(s)	262, 319
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	5 cut(s)	49, 125, 140, 260, 314
HpaII	CCGG	4 cut(s)	135, 264, 318, 390
Hpy166II	GTNNAC	2 cut(s)	211, 277
Hpy188I	TCNGA	4 cut(s)	124, 130, 335, 380
Hpy188III	TCNNGA	2 cut(s)	41, 53
Hpy8I	GTNNAC	2 cut(s)	211, 277
Hpy99I	CGWCG	2 cut(s)	254, 335
HpyAV	CCTTC	2 cut(s)	47, 232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 88
HpyF3I	CTNAG	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	1 cut(s)	79
LguI	GCTCTTC	1 cut(s)	308
Lsp1109I	GCAGC	2 cut(s)	100, 227
MaeI	CTAG	2 cut(s)	41, 374
MaeIII	GTNAC	1 cut(s)	96
MboII	GAAGA	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	2 cut(s)	29, 112
MlyI	GAGTC	3 cut(s)	43, 134, 254
MmeI	TCCRAC	2 cut(s)	313, 358
MnlI	CCTC	7 cut(s)	25, 102, 117, 130, 374, 377, 409
MseI	TTAA	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	325
MspI	CCGG	4 cut(s)	135, 264, 318, 390
MspR9I	CCNGG	4 cut(s)	135, 174, 230, 390
MvaI	CCWGG	2 cut(s)	174, 230
MvnI	CGCG	3 cut(s)	273, 297, 312
MwoI	GCNNNNNNNGC	2 cut(s)	85, 88
NciI	CCSGG	2 cut(s)	135, 390
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	308
PfeI	GAWTC	2 cut(s)	125, 314
PflFI	GACNNNGTC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	388
PkrI	GCNGC	4 cut(s)	81, 90, 242, 311
PleI	GAGTC	3 cut(s)	43, 134, 254
PpsI	GAGTC	3 cut(s)	43, 134, 254
PshAI	GACNNNNGTC	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	172, 228
PspGI	CCWGG	2 cut(s)	172, 228
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	5 cut(s)	176, 208, 232, 340, 386
PsyI	GACNNNGTC	1 cut(s)	290
SacI	GAGCTC	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	4 cut(s)	80, 89, 241, 310
Sau96I	GGNCC	5 cut(s)	176, 208, 232, 340, 386
SchI	GAGTC	3 cut(s)	43, 134, 254
ScrFI	CCNGG	4 cut(s)	135, 174, 230, 390
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	3 cut(s)	186, 210, 303
SinI	GGWCC	4 cut(s)	208, 232, 340, 386
Sse9I	AATT	2 cut(s)	29, 112
SspMI	CTAG	2 cut(s)	41, 374
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	4 cut(s)	133, 172, 228, 388
StyI	CCWWGG	1 cut(s)	204
TasI	AATT	2 cut(s)	29, 112
TauI	GCSGC	2 cut(s)	82, 312
TfiI	GAWTC	2 cut(s)	125, 314
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	2 cut(s)	88, 240
Tsp45I	GTSAC	1 cut(s)	96
TspGWI	ACGGA	2 cut(s)	238, 272
Tth111I	GACNNNGTC	1 cut(s)	290
VpaK11BI	GGWCC	4 cut(s)	208, 232, 340, 386
XbaI	TCTAGA	1 cut(s)	40
XceI	RCATGY	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	2 cut(s)	41, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.