Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001367

Physical Location & Seq

Genomic Coordinates Forward (+)

36412631 .. 36412888

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG204600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCTCTTCCGTTGCAACATCCTCACCATCGTTGGCGACGGCCCCTACCCCCTCTACTCCCCCAACAAGGTCATGATCTGGGACGACCACCAATCCTGCTGCATCGGCGAGCTCTCCTTCCGCTTCGAGGTCAAAGCCGTCAAGCTTTGCCGCAACCGCATCGTCTTCGTTCTGGTCCAGAAGATCTTCGTCTATAATTTCGCCGATTTGAAGCTTCTCCAAGCGCAGCGCCACCATCATTTTGGGAATTTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

85

Amino Acids

10.06

Weight (kDa)

9.07

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62770 AT3G62770
fragaria_vesca	FvH4_2g25170 FvH4_6g06350 FvH4_6g06350 FvH4_6g06350 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370
malus_domestica	MD03G1283100.v1.1 MD04G1202000.v1.1 MD11G1303400.v1.1 MD12G1216000.v1.1 MD12G1216100.v1.1
prunus_persica	Prupe.6G322300_v2.0.a1 Prupe.8G256500_v2.0.a1
pyrus_communis	pycom03g22400 pycom04g17820 pycom11g26510 pycom12g20160
rosa_chinensis	RchiOBHm_Chr3g0455431 RchiOBHm_Chr3g0455461 RchiOBHm_Chr6g0293291
rosa_laevigata	RLG00000011961 RLG00000025360 RLG00000025363
rosa_multiflora	Rmu_sc0003728.1_g000001 Rmu_sc0008350.1_g000001 Rmu_ssc0000162.1_g000036
rosa_roxburghii	Rroxscaffold_6G00424260 Rroxscaffold_6G00424290 Rroxscaffold_7G00174280
rosa_rugosa	Rorug03G0007500 Rorug03G0007800 Rorug06G0234300
rosa_samantha	Rh2AG090700 Rh3AG066800 Rh3AG067200 Rh3BG069200 Rh3BG069500 Rh3CG067600 Rh3CG068000 Rh3DG069200 Rh3DG069500 Rh5BG179700 Rh6AG347100 Rh6BG354400 Rh6CG214700 Rh6DG204600
rosa_wichuraiana	Rw3G005280 Rw3G005310 Rw6G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	121, 151, 157
AcsI	RAATTY	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	67, 127
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	3 cut(s)	112, 145, 214
AluI	AGCT	3 cut(s)	112, 145, 214
Alw21I	GWGCWC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	99, 226
ApoI	RAATTY	1 cut(s)	247
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	2 cut(s)	226, 231
AspS9I	GGNCC	2 cut(s)	41, 175
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	86, 238
BccI	CCATC	2 cut(s)	35, 243
BceAI	ACGGC	2 cut(s)	55, 122
BcgI	CGANNNNNNTGC	4 cut(s)	142, 148, 176, 182
BfoI	RGCGCY	1 cut(s)	232
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	3 cut(s)	100, 151, 227
BlsI	GCNGC	3 cut(s)	101, 152, 228
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	41, 175
BmiI	GGNNCC	1 cut(s)	43
BmsI	GCATC	2 cut(s)	111, 168
BpiI	GAAGAC	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 127
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	67, 127
BseXI	GCAGC	2 cut(s)	86, 238
BshFI	GGCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	67, 127
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	75, 183
BspACI	CCGC	3 cut(s)	121, 151, 157
BspANI	GGCC	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	11
BssMI	GATC	2 cut(s)	75, 183
Bst6I	CTCTTC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	18
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	2 cut(s)	226, 231
BstKTI	GATC	2 cut(s)	78, 186
BstMBI	GATC	2 cut(s)	75, 183
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 156
BstV1I	GCAGC	2 cut(s)	86, 238
BstV2I	GAAGAC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	110
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	2 cut(s)	226, 231
Cfr13I	GGNCC	2 cut(s)	41, 175
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	5 cut(s)	42, 112, 137, 145, 214
CviKI_1	RGCY	5 cut(s)	42, 112, 137, 145, 214
DpnI	GATC	2 cut(s)	77, 185
DpnII	GATC	2 cut(s)	75, 183
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	1 cut(s)	76
FaiI	YATR	2 cut(s)	74, 195
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	100, 151, 227
FokI	GGATG	1 cut(s)	5
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	3 cut(s)	100, 151, 227
GlaI	GCGC	2 cut(s)	225, 230
GluI	GCNGC	3 cut(s)	100, 151, 227
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	42
HhaI	GCGC	2 cut(s)	226, 231
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	2 cut(s)	224, 229
HinP1I	GCGC	2 cut(s)	224, 229
HindIII	AAGCTT	2 cut(s)	143, 212
HphI	GGTGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	73, 178
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	15, 102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 156
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	2 cut(s)	224, 229
Kzo9I	GATC	2 cut(s)	75, 183
LguI	GCTCTTC	1 cut(s)	11
LpnPI	CCDG	4 cut(s)	64, 109, 158, 191
Lsp1109I	GCAGC	2 cut(s)	86, 238
LweI	GCATC	2 cut(s)	111, 168
MalI	GATC	2 cut(s)	77, 185
MboI	GATC	2 cut(s)	75, 183
MboII	GAAGA	3 cut(s)	157, 178, 193
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	196, 247
MnlI	CCTC	3 cut(s)	32, 62, 121
MroXI	GAANNNNTTC	1 cut(s)	185
MteI	GCGCNGCGC	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	105, 156
NdeII	GATC	2 cut(s)	75, 183
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	43
PagI	TCATGA	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	185
PkrI	GCNGC	3 cut(s)	101, 152, 228
Psp124BI	GAGCTC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	41, 175
PsuI	RGATCY	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	11
SatI	GCNGC	3 cut(s)	100, 151, 227
Sau3AI	GATC	2 cut(s)	75, 183
Sau96I	GGNCC	2 cut(s)	41, 175
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	5 cut(s)	72, 114, 132, 147, 216
SfaNI	GCATC	2 cut(s)	111, 168
SinI	GGWCC	1 cut(s)	175
Sse9I	AATT	2 cut(s)	196, 247
SsiI	CCGC	3 cut(s)	121, 151, 157
SstI	GAGCTC	1 cut(s)	114
TaqI	TCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	196, 247
TauI	GCSGC	1 cut(s)	153
TseI	GCWGC	2 cut(s)	99, 226
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.