Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008350.1

Orthogroup ID

OG0001367

Physical Location & Seq

Genomic Coordinates Forward (+)

12267 .. 12704

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008350.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggcctccgactgcgcccccgacaactcctactgtccctccccagcccaaaacccgactcttcccccggcccagctcctcaacctctccttcaaccaggaccacaactgcttagccgccggcatcgacctcggcttccacatctacaactgctacctctttcgcgagatcttcagcagcgactttggcccacgcggcgccgtcggattagtccagatgctcttccgctgcaacatactcaccatcgtcggcgacggccttgaccccttctactcccccaacaaggtcatgatctgggacgatcaccagtcccgctgcataggcgagctctccttccgctccgaggtcaaagctgtcaagctccgccgcgaccgcatcgtcgtcgttctggtccaaaagatcttcgtctacaatttcgccaatttgaagcttctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

145

Amino Acids

16.33

Weight (kDa)

6.8

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62770 AT3G62770
fragaria_vesca	FvH4_2g25170 FvH4_6g06350 FvH4_6g06350 FvH4_6g06350 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370 FvH4_6g06370
malus_domestica	MD03G1283100.v1.1 MD04G1202000.v1.1 MD11G1303400.v1.1 MD12G1216000.v1.1 MD12G1216100.v1.1
prunus_persica	Prupe.6G322300_v2.0.a1 Prupe.8G256500_v2.0.a1
pyrus_communis	pycom03g22400 pycom04g17820 pycom11g26510 pycom12g20160
rosa_chinensis	RchiOBHm_Chr3g0455431 RchiOBHm_Chr3g0455461 RchiOBHm_Chr6g0293291
rosa_laevigata	RLG00000011961 RLG00000025360 RLG00000025363
rosa_multiflora	Rmu_sc0003728.1_g000001 Rmu_sc0008350.1_g000001 Rmu_ssc0000162.1_g000036
rosa_roxburghii	Rroxscaffold_6G00424260 Rroxscaffold_6G00424290 Rroxscaffold_7G00174280
rosa_rugosa	Rorug03G0007500 Rorug03G0007800 Rorug06G0234300
rosa_samantha	Rh2AG090700 Rh3AG066800 Rh3AG067200 Rh3BG069200 Rh3BG069500 Rh3CG067600 Rh3CG068000 Rh3DG069200 Rh3DG069500 Rh5BG179700 Rh6AG347100 Rh6BG354400 Rh6CG214700 Rh6DG204600
rosa_wichuraiana	Rw3G005280 Rw3G005310 Rw6G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	408
AccII	CGCG	3 cut(s)	165, 195, 369
AciI	CCGC	8 cut(s)	117, 195, 226, 313, 337, 364, 367, 373
AcuI	CTGAAG	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	198
AfiI	CCNNNNNNNGG	2 cut(s)	283, 343
AgsI	TTSAA	2 cut(s)	94, 427
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	5 cut(s)	76, 328, 353, 361, 430
AluI	AGCT	5 cut(s)	76, 328, 353, 361, 430
Alw21I	GWGCWC	1 cut(s)	330
AoxI	GGCC	4 cut(s)	3, 69, 187, 256
ApeKI	GCWGC	3 cut(s)	177, 228, 315
AspLEI	GCGC	2 cut(s)	17, 200
AspS9I	GGNCC	4 cut(s)	70, 100, 188, 391
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	232, 296
AvaII	GGWCC	2 cut(s)	100, 391
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	189, 215, 302
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	2 cut(s)	185, 271
BcgI	CGANNNNNNTGC	4 cut(s)	112, 146, 364, 398
BciT130I	CCWGG	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	68
BfaI	CTAG	1 cut(s)	436
BfoI	RGCGCY	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	195
BglII	AGATCT	2 cut(s)	168, 399
BisI	GCNGC	6 cut(s)	117, 178, 196, 229, 316, 367
BlpI	GCTNAGC	1 cut(s)	112
BlsI	GCNGC	6 cut(s)	118, 179, 197, 230, 317, 368
Bme1390I	CCNGG	2 cut(s)	68, 98
Bme18I	GGWCC	2 cut(s)	100, 391
BmgT120I	GGNCC	4 cut(s)	70, 100, 188, 391
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	2 cut(s)	68, 98
BmsI	GCATC	3 cut(s)	132, 207, 384
Bpu1102I	GCTNAGC	1 cut(s)	112
BpuMI	CCSGG	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	66, 130, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 343
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	3 cut(s)	66, 130, 342
BseLI	CCNNNNNNNGG	2 cut(s)	283, 343
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	189, 215, 302
BseYI	CCCAGC	2 cut(s)	43, 72
Bsh1236I	CGCG	3 cut(s)	165, 195, 369
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	4 cut(s)	5, 71, 189, 258
BshNI	GGYRCC	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	68, 120
BslFI	GGGAC	3 cut(s)	21, 295, 311
BslI	CCNNNNNNNGG	2 cut(s)	283, 343
BsmFI	GGGAC	3 cut(s)	21, 295, 311
BsnI	GGCC	4 cut(s)	5, 71, 189, 258
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	4 cut(s)	168, 291, 301, 399
Bsp1720I	GCTNAGC	1 cut(s)	112
Bsp68I	TCGCGA	1 cut(s)	165
BspACI	CCGC	8 cut(s)	117, 195, 226, 313, 337, 364, 367, 373
BspANI	GGCC	4 cut(s)	5, 71, 189, 258
BspFNI	CGCG	3 cut(s)	165, 195, 369
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	339
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	66, 130, 342
BssMI	GATC	4 cut(s)	168, 291, 301, 399
BssNI	GRCGYC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	2 cut(s)	66, 227
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	121, 326
BstDEI	CTNAG	1 cut(s)	112
BstFNI	CGCG	3 cut(s)	165, 195, 369
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	17, 200
BstKTI	GATC	4 cut(s)	171, 294, 304, 402
BstMBI	GATC	4 cut(s)	168, 291, 301, 399
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 195, 321, 372
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	2 cut(s)	66, 96
BstUI	CGCG	3 cut(s)	165, 195, 369
BstV1I	GCAGC	3 cut(s)	189, 215, 302
BstX2I	RGATCY	2 cut(s)	168, 399
BstYI	RGATCY	2 cut(s)	168, 399
BsuRI	GGCC	4 cut(s)	5, 71, 189, 258
BtuMI	TCGCGA	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	121, 326
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	2 cut(s)	17, 200
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	4 cut(s)	70, 100, 188, 391
CviAII	CATG	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	112
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	4 cut(s)	170, 293, 303, 401
DpnII	GATC	4 cut(s)	168, 291, 301, 399
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
Eam1104I	CTCTTC	2 cut(s)	66, 227
EarI	CTCTTC	2 cut(s)	66, 227
EciI	GGCGGA	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	330
Eco47I	GGWCC	2 cut(s)	100, 391
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	330
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
FaeI	CATG	1 cut(s)	292
FaiI	YATR	3 cut(s)	236, 290, 320
FaqI	GGGAC	3 cut(s)	21, 295, 311
FatI	CATG	1 cut(s)	288
FauI	CCCGC	1 cut(s)	320
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	6 cut(s)	117, 178, 196, 229, 316, 367
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	6 cut(s)	117, 178, 196, 229, 316, 367
FspBI	CTAG	1 cut(s)	436
GlaI	GCGC	2 cut(s)	16, 199
GluI	GCNGC	6 cut(s)	117, 178, 196, 229, 316, 367
GsaI	CCCAGC	2 cut(s)	47, 76
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	4 cut(s)	5, 71, 189, 258
HapII	CCGG	2 cut(s)	68, 120
HhaI	GCGC	2 cut(s)	17, 200
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	2 cut(s)	15, 198
HinP1I	GCGC	2 cut(s)	15, 198
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	2 cut(s)	68, 120
HphI	GGTGA	2 cut(s)	232, 296
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	3 cut(s)	10, 206, 343
Hpy188III	TCNNGA	3 cut(s)	164, 214, 289
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	5 cut(s)	206, 251, 257, 383, 386
HpyAV	CCTTC	3 cut(s)	100, 277, 343
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	231, 318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 195, 321, 372
HpyF3I	CTNAG	1 cut(s)	112
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	2 cut(s)	15, 198
KasI	GGCGCC	1 cut(s)	197
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	168, 291, 301, 399
LguI	GCTCTTC	1 cut(s)	227
LmnI	GCTCC	3 cut(s)	81, 344, 366
Lsp1109I	GCAGC	3 cut(s)	189, 215, 302
LweI	GCATC	3 cut(s)	132, 207, 384
MaeI	CTAG	1 cut(s)	436
MalI	GATC	4 cut(s)	170, 293, 303, 401
MbiI	CCGCTC	1 cut(s)	339
MboI	GATC	4 cut(s)	168, 291, 301, 399
MboII	GAAGA	4 cut(s)	53, 163, 214, 394
MflI	RGATCY	2 cut(s)	168, 399
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	2 cut(s)	412, 421
Mly113I	GGCGCC	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	2 cut(s)	33, 184
MnlI	CCTC	7 cut(s)	16, 49, 89, 95, 140, 167, 337
MroNI	GCCGGC	1 cut(s)	119
MspA1I	CMGCKG	2 cut(s)	228, 315
MspI	CCGG	2 cut(s)	68, 120
MspR9I	CCNGG	2 cut(s)	68, 98
MvaI	CCWGG	1 cut(s)	98
MvnI	CGCG	3 cut(s)	165, 195, 369
MwoI	GCNNNNNNNGC	4 cut(s)	186, 195, 321, 372
NaeI	GCCGGC	1 cut(s)	121
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	4 cut(s)	168, 291, 301, 399
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	199
NmeAIII	GCCGAG	1 cut(s)	111
NruI	TCGCGA	1 cut(s)	165
PagI	TCATGA	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	227
PdiI	GCCGGC	1 cut(s)	121
PkrI	GCNGC	6 cut(s)	118, 179, 197, 230, 317, 368
PleI	GAGTC	1 cut(s)	52
PluTI	GGCGCC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	96
PspFI	CCCAGC	2 cut(s)	43, 72
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	4 cut(s)	70, 100, 188, 391
PsuI	RGATCY	2 cut(s)	168, 399
RruI	TCGCGA	1 cut(s)	165
SacI	GAGCTC	1 cut(s)	330
SapI	GCTCTTC	1 cut(s)	227
SatI	GCNGC	6 cut(s)	117, 178, 196, 229, 316, 367
Sau3AI	GATC	4 cut(s)	168, 291, 301, 399
Sau96I	GGNCC	4 cut(s)	70, 100, 188, 391
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	2 cut(s)	68, 98
SduI	GDGCHC	1 cut(s)	330
SfaNI	GCATC	3 cut(s)	132, 207, 384
SfoI	GGCGCC	1 cut(s)	199
SinI	GGWCC	2 cut(s)	100, 391
Sse9I	AATT	2 cut(s)	412, 421
SsiI	CCGC	8 cut(s)	117, 195, 226, 313, 337, 364, 367, 373
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	436
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	66, 96
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	412, 421
TauI	GCSGC	3 cut(s)	119, 198, 369
TseI	GCWGC	3 cut(s)	177, 228, 315
VpaK11BI	GGWCC	2 cut(s)	100, 391
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.