Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011024

Physical Location & Seq

Genomic Coordinates Reverse (-)

9426796 .. 9428170

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATGCCTCGCCGTGACGTCCTCTTCCTCTCACTCCTCCTCGTCATCGCCACCGTCTCCGCTGTCGCATTAGCCGACGATGAAGCAGATTGTGTCTACACATTCTTCCTTAGAACCGGATCAACCTTCAAAGCCGGTACAGATTCGATCATAAGCGCTAGAGTCTACGACAAATACGGAGACTACATCGGGATCCGAAACCTAGAAGCATGGGGTGGTTTAATGGGACCAGGTTACAACTACTACGAGAGGGGTAATCTCGACATTTTCAGTGGGAAAGCACCATGTCTTCCGAGCCCAGTCTGTTCATTAAATCTGACCTCTGACGGCTCCGGTGACCACCACGGTTGGTATGTTAACTACGTGGAAGTCACGACAGCCGGAGTTCATGCAAAGTGCTCGTACCAAAGCTTTGATGTTGAGCAATGGCTTGCGTCCGATACATCGCCGTATGAGCTCAGTGCTGTTCGGAATAACTGTCCAGTTTCGCTTAGGGAAAGTGTCGGTCGGGTCGGGTCTGAGATCCGGAAGACTCTCTCTTGGATCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0010035 GO:0012505 GO:0016020 GO:0031090 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAT

Protein Analysis

183

Amino Acids

20.13

Weight (kDa)

5.12

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATS3	PF06232	24 - 133	2.2e-06	Embryo-specific protein 3, (ATS3)
PLAT	PF01477	33 - 151	2.5e-11	PLAT/LH2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22170 AT4G39730
fragaria_vesca	FvH4_1g21150 FvH4_1g21150
malus_domestica	MD01G1027400.v1.1 MD15G1326500.v1.1
prunus_persica	Prupe.6G182600_v2.0.a1
pyrus_communis	pycom01g05540 pycom15g28790
rosa_chinensis	RchiOBHm_Chr2g0114931
rosa_laevigata	RLG00000018136
rosa_multiflora	Rmu_sc0002764.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130460
rosa_rugosa	Rorug02G0191900
rosa_samantha	Rh2AG250700 Rh2BG260100 Rh2CG254900 Rh2DG258800
rosa_wichuraiana	Rw2G019550 Rw2G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	21
AccI	GTMKAC	2 cut(s)	96, 165
AccIII	TCCGGA	1 cut(s)	525
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	5 cut(s)	127, 187, 200, 517, 551
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	2 cut(s)	139, 404
AfeI	AGCGCT	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	2 cut(s)	411, 457
AluI	AGCT	2 cut(s)	411, 457
Alw21I	GWGCWC	2 cut(s)	401, 459
Alw26I	GTCTC	2 cut(s)	61, 174
AlwI	GGATC	5 cut(s)	127, 187, 200, 517, 551
Aor13HI	TCCGGA	1 cut(s)	525
Aor51HI	AGCGCT	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	192
BanII	GRGCYC	2 cut(s)	299, 459
BbsI	GAAGAC	2 cut(s)	281, 536
Bbv12I	GWGCWC	2 cut(s)	401, 459
BceAI	ACGGC	2 cut(s)	343, 433
BcgI	CGANNNNNNTGC	2 cut(s)	381, 415
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	61, 174
BfaI	CTAG	2 cut(s)	159, 203
BfoI	RGCGCY	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	3 cut(s)	194, 228, 331
BmrFI	CCNGG	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	293
BmuI	ACTGGG	1 cut(s)	293
BpiI	GAAGAC	2 cut(s)	281, 536
Bpu10I	CCTNAGC	1 cut(s)	491
BsaAI	YACGTR	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	343
BsaWI	WCCGGW	3 cut(s)	116, 332, 525
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	299, 482
Bse3DI	GCAATG	1 cut(s)	431
BseAI	TCCGGA	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	431
BseMII	CTCAG	2 cut(s)	472, 510
BseNI	ACTGG	2 cut(s)	299, 482
BseRI	GAGGAG	2 cut(s)	26, 29
Bsh1285I	CGRYCG	1 cut(s)	508
BsiEI	CGRYCG	1 cut(s)	508
BsiHKAI	GWGCWC	2 cut(s)	401, 459
BsiSI	CCGG	5 cut(s)	117, 135, 333, 381, 526
BslFI	GGGAC	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	61, 174
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	240
Bsp1286I	GDGCHC	3 cut(s)	299, 401, 459
Bsp13I	TCCGGA	1 cut(s)	525
Bsp143I	GATC	5 cut(s)	119, 147, 192, 522, 543
BspACI	CCGC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	471, 511
BspEI	TCCGGA	1 cut(s)	525
BspLI	GGNNCC	3 cut(s)	194, 228, 331
BspPI	GGATC	5 cut(s)	127, 187, 200, 517, 551
BsrDI	GCAATG	1 cut(s)	431
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	299, 482
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	5 cut(s)	119, 147, 192, 522, 543
BssNI	GRCGYC	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	55, 347, 479
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	4 cut(s)	110, 458, 491, 519
BstDSI	CCRYGG	1 cut(s)	343
BstEII	GGTNACC	1 cut(s)	335
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	5 cut(s)	122, 150, 195, 525, 546
BstMAI	GTCTC	2 cut(s)	61, 174
BstMBI	GATC	5 cut(s)	119, 147, 192, 522, 543
BstMCI	CGRYCG	1 cut(s)	508
BstMWI	GCNNNNNNNGC	1 cut(s)	454
BstNI	CCWGG	1 cut(s)	231
BstPI	GGTNACC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	229
BstV2I	GAAGAC	2 cut(s)	281, 536
BstX2I	RGATCY	2 cut(s)	192, 522
BstYI	RGATCY	2 cut(s)	192, 522
BtgI	CCRYGG	1 cut(s)	343
BtgZI	GCGATG	2 cut(s)	31, 429
BtsIMutI	CAGTG	2 cut(s)	277, 466
Cac8I	GCNNGC	1 cut(s)	432
CfoI	GCGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	1 cut(s)	423
CsiI	ACCWGGT	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	138, 403
CspCI	CAANNNNNGTGG	2 cut(s)	329, 364
CviAII	CATG	3 cut(s)	210, 285, 389
CviJI	RGCY	8 cut(s)	74, 134, 297, 330, 380, 411, 430, 457
CviKI_1	RGCY	8 cut(s)	74, 134, 297, 330, 380, 411, 430, 457
CviQI	GTAC	2 cut(s)	138, 403
DdeI	CTNAG	4 cut(s)	110, 458, 491, 519
DpnI	GATC	5 cut(s)	121, 149, 194, 524, 545
DpnII	GATC	5 cut(s)	119, 147, 192, 522, 543
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	457
Eco24I	GRGCYC	2 cut(s)	299, 459
Eco47I	GGWCC	1 cut(s)	227
Eco47III	AGCGCT	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	457
Eco91I	GGTNACC	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	457
EcoO65I	GGTNACC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	229
EcoT38I	GRGCYC	2 cut(s)	299, 459
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	3 cut(s)	213, 288, 392
FaiI	YATR	6 cut(s)	152, 211, 286, 354, 390, 453
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	3 cut(s)	209, 284, 388
FblI	GTMKAC	2 cut(s)	96, 165
FriOI	GRGCYC	2 cut(s)	299, 459
FspBI	CTAG	2 cut(s)	159, 203
GlaI	GCGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	159
HapII	CCGG	5 cut(s)	117, 135, 333, 381, 526
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	3 cut(s)	213, 288, 392
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	3 cut(s)	143, 162, 532
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	5 cut(s)	117, 135, 333, 381, 526
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	3 cut(s)	97, 166, 358
Hpy188I	TCNGA	7 cut(s)	197, 294, 318, 325, 439, 471, 520
Hpy188III	TCNNGA	4 cut(s)	190, 260, 373, 526
Hpy8I	GTNNAC	3 cut(s)	97, 166, 358
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	3 cut(s)	55, 347, 479
HpyCH4IV	ACGT	2 cut(s)	18, 363
HpyCH4V	TGCA	1 cut(s)	392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	454
HpyF3I	CTNAG	4 cut(s)	110, 458, 491, 519
HpySE526I	ACGT	2 cut(s)	18, 363
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	213, 288, 392
HspAI	GCGC	1 cut(s)	156
Kpn2I	TCCGGA	1 cut(s)	525
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	119, 147, 192, 522, 543
LmnI	GCTCC	1 cut(s)	335
LpnPI	CCDG	9 cut(s)	130, 148, 216, 243, 312, 346, 394, 495, 539
MabI	ACCWGGT	1 cut(s)	229
MaeI	CTAG	2 cut(s)	159, 203
MaeII	ACGT	2 cut(s)	18, 363
MaeIII	GTNAC	4 cut(s)	14, 233, 335, 370
MalI	GATC	5 cut(s)	121, 149, 194, 524, 545
MboI	GATC	5 cut(s)	119, 147, 192, 522, 543
MboII	GAAGA	4 cut(s)	16, 97, 281, 541
MflI	RGATCY	2 cut(s)	192, 522
MhlI	GDGCHC	3 cut(s)	299, 401, 459
MlyI	GAGTC	2 cut(s)	171, 526
MnlI	CCTC	7 cut(s)	18, 32, 38, 47, 50, 243, 331
MroI	TCCGGA	1 cut(s)	525
MseI	TTAA	3 cut(s)	221, 311, 357
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	5 cut(s)	117, 135, 333, 381, 526
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	454
NdeII	GATC	5 cut(s)	119, 147, 192, 522, 543
NlaIII	CATG	3 cut(s)	213, 288, 392
NlaIV	GGNNCC	3 cut(s)	194, 228, 331
NmuCI	GTSAC	3 cut(s)	14, 335, 370
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	143
PleI	GAGTC	2 cut(s)	170, 526
PpsI	GAGTC	2 cut(s)	170, 526
Ppu21I	YACGTR	1 cut(s)	364
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	229
PspEI	GGTNACC	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	194, 228, 331
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	2 cut(s)	192, 522
RsaI	GTAC	2 cut(s)	139, 404
RsaNI	GTAC	2 cut(s)	138, 403
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	221, 311, 357
Sau3AI	GATC	5 cut(s)	119, 147, 192, 522, 543
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	2 cut(s)	171, 526
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	3 cut(s)	299, 401, 459
SetI	ASST	8 cut(s)	21, 128, 204, 235, 323, 366, 413, 459
SexAI	ACCWGGT	1 cut(s)	229
SinI	GGWCC	1 cut(s)	227
SsiI	CCGC	1 cut(s)	60
SspMI	CTAG	2 cut(s)	159, 203
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	3 cut(s)	55, 347, 479
TaiI	ACGT	2 cut(s)	21, 366
TaqI	TCGA	2 cut(s)	146, 261
TaqII	GACCGA	1 cut(s)	494
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	3 cut(s)	221, 311, 357
Tru9I	TTAA	3 cut(s)	221, 311, 357
TscAI	CASTG	2 cut(s)	277, 466
TseFI	GTSAC	3 cut(s)	14, 335, 370
Tsp45I	GTSAC	3 cut(s)	14, 335, 370
TspDTI	ATGAA	3 cut(s)	96, 297, 377
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	277, 466
VpaK11BI	GGWCC	1 cut(s)	227
XmiI	GTMKAC	2 cut(s)	96, 165
XspI	CTAG	2 cut(s)	159, 203
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.