Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011024

Physical Location & Seq

Genomic Coordinates Reverse (-)

13164370 .. 13165681

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21150.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGCCCAACACCAACAGTGTCCTCCTCTTCCTCACCCTCTCCCTCTTCCTCTCTCTCGCTTTCTCCGACGACCCCGATTGCGTTTACACAATTTACGTTAGAACCGGGTCAATCATCAAGGGTGGGACTGATTCCAGCATCAGCGTGAGGCTCTACGACGGCAACGGCTACGGCATCGAGATCAGGAACCTGAAAACATGGGGAGGGTTGATGGGATCCGACTACGACTACTTCGAGAGGGGCAATCTCGATATTTTCAGCGGCCGCGGACCCTGCCTCACCGCCCCTATCTGCGCCCTCAACCTCACCTCCGACGGCTACGGATCCGGCCACGGTTGGTACGTCAACTACCTCGAGGTGACGTCCATGGGGGCTCACATACCTTGCAGCCAGCAGCTGTTCACGATCGAGCAGTGGCTCGCCACCGATACGTCGCCGTACGAGCTCACAGCCATCAGGAACTACTGTAATTCCAACGACGCCGTCGAGGAGAAGATCCGATCCGGTTCCGGTGGTTTGGTTTCATCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001965 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009651 GO:0010035 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0055035 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAT

Protein Analysis

179

Amino Acids

19.36

Weight (kDa)

4.52

Isoelectric Point (pI)

26.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATS3	PF06232	19 - 125	1.3e-07	Embryo-specific protein 3, (ATS3)
PLAT	PF01477	30 - 149	2.3e-08	PLAT/LH2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22170 AT4G39730
fragaria_vesca	FvH4_1g21150 FvH4_1g21150
malus_domestica	MD01G1027400.v1.1 MD15G1326500.v1.1
prunus_persica	Prupe.6G182600_v2.0.a1
pyrus_communis	pycom01g05540 pycom15g28790
rosa_chinensis	RchiOBHm_Chr2g0114931
rosa_laevigata	RLG00000018136
rosa_multiflora	Rmu_sc0002764.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130460
rosa_rugosa	Rorug02G0191900
rosa_samantha	Rh2AG250700 Rh2BG260100 Rh2CG254900 Rh2DG258800
rosa_wichuraiana	Rw2G019550 Rw2G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	368
AbsI	CCTCGAGG	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	270
AciI	CCGC	4 cut(s)	264, 268, 270, 285
AclWI	GGATC	6 cut(s)	213, 226, 321, 334, 493, 498
AcoI	YGGCCR	2 cut(s)	265, 331
AcyI	GRCGYC	3 cut(s)	5, 365, 483
AfaI	GTAC	2 cut(s)	344, 443
AluBI	AGCT	2 cut(s)	400, 448
AluI	AGCT	2 cut(s)	400, 448
Alw21I	GWGCWC	1 cut(s)	450
AlwI	GGATC	6 cut(s)	213, 226, 321, 334, 493, 498
AlwNI	CAGNNNCTG	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	265, 331
ApeKI	GCWGC	2 cut(s)	390, 397
AspLEI	GCGC	2 cut(s)	7, 299
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	4 cut(s)	28, 274, 301, 373
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	272
BamHI	GGATCC	2 cut(s)	218, 326
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	379, 450
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	402, 409
BccI	CCATC	2 cut(s)	208, 464
BceAI	ACGGC	6 cut(s)	178, 184, 190, 334, 424, 470
BcnI	CCSGG	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	4 cut(s)	265, 268, 391, 398
BlsI	GCNGC	4 cut(s)	266, 269, 392, 399
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	6 cut(s)	6, 191, 220, 274, 328, 511
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	2 cut(s)	150, 186
BpuMI	CCSGG	1 cut(s)	109
BsaHI	GRCGYC	3 cut(s)	5, 365, 483
BsaJI	CCNNGG	3 cut(s)	268, 334, 369
BsaWI	WCCGGW	2 cut(s)	506, 512
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
BseDI	CCNNGG	3 cut(s)	268, 334, 369
BseRI	GAGGAG	2 cut(s)	17, 506
BseX3I	CGGCCG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	402, 409
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	2 cut(s)	268, 411
BshFI	GGCC	2 cut(s)	267, 333
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	2 cut(s)	268, 411
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	4 cut(s)	108, 330, 507, 513
BsiWI	CGTACG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	267, 333
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	379, 450
Bsp143I	GATC	6 cut(s)	183, 218, 326, 408, 498, 503
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	4 cut(s)	264, 268, 270, 285
BspANI	GGCC	2 cut(s)	267, 333
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	6 cut(s)	6, 191, 220, 274, 328, 511
BspPI	GGATC	6 cut(s)	213, 226, 321, 334, 493, 498
BspT107I	GGYRCC	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	268, 334, 369
BssMI	GATC	6 cut(s)	183, 218, 326, 408, 498, 503
BssNI	GRCGYC	3 cut(s)	5, 365, 483
BssT1I	CCWWGG	1 cut(s)	369
Bst4CI	ACNGT	3 cut(s)	20, 338, 470
Bst6I	CTCTTC	2 cut(s)	35, 53
BstACI	GRCGYC	3 cut(s)	5, 365, 483
BstC8I	GCNNGC	2 cut(s)	395, 423
BstDSI	CCRYGG	3 cut(s)	268, 334, 369
BstFNI	CGCG	1 cut(s)	270
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 299
BstKTI	GATC	6 cut(s)	186, 221, 329, 411, 501, 506
BstMBI	GATC	6 cut(s)	183, 218, 326, 408, 498, 503
BstMCI	CGRYCG	2 cut(s)	268, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 445
BstSCI	CCNGG	1 cut(s)	107
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	402, 409
BstX2I	RGATCY	3 cut(s)	218, 326, 498
BstYI	RGATCY	3 cut(s)	218, 326, 498
BstZI	CGGCCG	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	267, 333
BtgI	CCRYGG	3 cut(s)	268, 334, 369
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	2 cut(s)	25, 422
Cac8I	GCNNGC	2 cut(s)	395, 423
CaiI	CAGNNNCTG	1 cut(s)	400
CciNI	GCGGCCGC	1 cut(s)	265
CfoI	GCGC	2 cut(s)	7, 299
Cfr13I	GGNCC	1 cut(s)	272
Cfr42I	CCGCGG	1 cut(s)	271
CseI	GACGC	1 cut(s)	491
Csp6I	GTAC	2 cut(s)	343, 442
CviAII	CATG	2 cut(s)	201, 370
CviQI	GTAC	2 cut(s)	343, 442
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	6 cut(s)	185, 220, 328, 410, 500, 505
DpnII	GATC	6 cut(s)	183, 218, 326, 408, 498, 503
EaeI	YGGCCR	2 cut(s)	265, 331
EagI	CGGCCG	1 cut(s)	265
Eam1104I	CTCTTC	2 cut(s)	35, 53
EarI	CTCTTC	2 cut(s)	35, 53
Ecl136II	GAGCTC	1 cut(s)	448
EclXI	CGGCCG	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	369
Eco24I	GRGCYC	2 cut(s)	379, 450
Eco47I	GGWCC	1 cut(s)	272
Eco52I	CGGCCG	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	369
EcoT38I	GRGCYC	2 cut(s)	379, 450
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	2 cut(s)	204, 373
FaiI	YATR	3 cut(s)	202, 371, 383
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	2 cut(s)	200, 369
Fnu4HI	GCNGC	4 cut(s)	265, 268, 391, 398
FriOI	GRGCYC	2 cut(s)	379, 450
Fsp4HI	GCNGC	4 cut(s)	265, 268, 391, 398
GlaI	GCGC	2 cut(s)	6, 298
GluI	GCNGC	4 cut(s)	265, 268, 391, 398
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	267, 333
HapII	CCGG	4 cut(s)	108, 330, 507, 513
HgaI	GACGC	1 cut(s)	491
HhaI	GCGC	2 cut(s)	7, 299
Hin1I	GRCGYC	3 cut(s)	5, 365, 483
Hin1II	CATG	2 cut(s)	204, 373
Hin6I	GCGC	2 cut(s)	5, 297
HinP1I	GCGC	2 cut(s)	5, 297
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	4 cut(s)	108, 330, 507, 513
HphI	GGTGA	4 cut(s)	28, 274, 301, 373
Hpy166II	GTNNAC	3 cut(s)	88, 349, 405
Hpy188I	TCNGA	4 cut(s)	70, 223, 316, 503
Hpy188III	TCNNGA	6 cut(s)	181, 187, 238, 251, 406, 460
Hpy8I	GTNNAC	3 cut(s)	88, 349, 405
Hpy99I	CGWCG	6 cut(s)	74, 164, 320, 439, 485, 491
HpyCH4III	ACNGT	3 cut(s)	20, 338, 470
HpyCH4IV	ACGT	4 cut(s)	99, 345, 365, 434
HpyCH4V	TGCA	1 cut(s)	390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 445
HpySE526I	ACGT	4 cut(s)	99, 345, 365, 434
Hsp92I	GRCGYC	3 cut(s)	5, 365, 483
Hsp92II	CATG	2 cut(s)	204, 373
HspAI	GCGC	2 cut(s)	5, 297
KasI	GGCGCC	1 cut(s)	4
KspI	CCGCGG	1 cut(s)	271
Kzo9I	GATC	6 cut(s)	183, 218, 326, 408, 498, 503
Lsp1109I	GCAGC	2 cut(s)	402, 409
LweI	GCATC	2 cut(s)	150, 186
MaeII	ACGT	4 cut(s)	99, 345, 365, 434
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	6 cut(s)	185, 220, 328, 410, 500, 505
MboI	GATC	6 cut(s)	183, 218, 326, 408, 498, 503
MboII	GAAGA	3 cut(s)	22, 40, 508
MflI	RGATCY	3 cut(s)	218, 326, 498
MhlI	GDGCHC	2 cut(s)	379, 450
MluCI	AATT	2 cut(s)	93, 472
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	4 cut(s)	93, 246, 339, 501
MslI	CAYNNNNRTG	1 cut(s)	146
MspA1I	CMGCKG	3 cut(s)	264, 270, 400
MspI	CCGG	4 cut(s)	108, 330, 507, 513
MspR9I	CCNGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	276, 445
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	109
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	6 cut(s)	183, 218, 326, 408, 498, 503
NlaIII	CATG	2 cut(s)	204, 373
NlaIV	GGNNCC	6 cut(s)	6, 191, 220, 274, 328, 511
NmuCI	GTSAC	1 cut(s)	361
NotI	GCGGCCGC	1 cut(s)	265
PaeR7I	CTCGAG	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	4 cut(s)	66, 234, 342, 486
PfeI	GAWTC	1 cut(s)	134
Pfl23II	CGTACG	1 cut(s)	441
PflFI	GACNNNGTC	1 cut(s)	485
PkrI	GCNGC	4 cut(s)	266, 269, 392, 399
Ple19I	CGATCG	1 cut(s)	411
PluTI	GGCGCC	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	450
PspLI	CGTACG	1 cut(s)	441
PspN4I	GGNNCC	6 cut(s)	6, 191, 220, 274, 328, 511
PspPI	GGNCC	1 cut(s)	272
PspXI	VCTCGAGB	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	400
PsuI	RGATCY	3 cut(s)	218, 326, 498
PsyI	GACNNNGTC	1 cut(s)	485
PvuI	CGATCG	1 cut(s)	411
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	2 cut(s)	344, 443
RsaNI	GTAC	2 cut(s)	343, 442
RseI	CAYNNNNRTG	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	450
SacII	CCGCGG	1 cut(s)	271
SatI	GCNGC	4 cut(s)	265, 268, 391, 398
Sau3AI	GATC	6 cut(s)	183, 218, 326, 408, 498, 503
Sau96I	GGNCC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	2 cut(s)	379, 450
SfaNI	GCATC	2 cut(s)	150, 186
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	356
Sfr303I	CCGCGG	1 cut(s)	271
SgrBI	CCGCGG	1 cut(s)	271
SinI	GGWCC	1 cut(s)	272
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	2 cut(s)	93, 472
SsiI	CCGC	4 cut(s)	264, 268, 270, 285
SspDI	GGCGCC	1 cut(s)	4
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	3 cut(s)	20, 338, 470
TaiI	ACGT	4 cut(s)	102, 348, 368, 437
TaqI	TCGA	6 cut(s)	180, 237, 252, 357, 411, 489
TasI	AATT	2 cut(s)	93, 472
TauI	GCSGC	2 cut(s)	267, 270
TfiI	GAWTC	1 cut(s)	134
TscAI	CASTG	2 cut(s)	25, 422
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	2 cut(s)	390, 397
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	516
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	2 cut(s)	25, 422
Tth111I	GACNNNGTC	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	272
XhoI	CTCGAG	1 cut(s)	356
ZraI	GACGTC	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.