Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011024

Physical Location & Seq

Genomic Coordinates Reverse (-)

17904238 .. 17907502

Gene Structure 3265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0191900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGATTTCGGAAACGAGGCAGACCAGAGGGCCAAGGAGGCTGAGTTTCGGGCCGAAGAGTTGGAGGATGAACTGGGAGAATTGAGGGAAGAATTGAAGTTTTACAAGAATGAATACGAGAGGCTTTCGATTGGTTTAGAATGTAAGTCACTGAGTCCATCCTTGAGGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGAAACACTTGAGAAGGATAAAGAACATCTAAGGATCAATCTTCTTTCTGCTGAAGAGGAGGTCAAATTGCTTTTCGAAGAAAACAAAGTGTTAGATGAAGCTAACAAAAGATTACTAAAGCAGTACCGCAAGGAAAGAAAGAATTCTGGTTCTGATGGAAAGCATACTGATGGATCAACGAAGGTGATGAGCAGCAGCCCGATTCAGGGGAAGATCGATTTCAGTGACCAAGAATTAGCAAGACAACCTCTCTCACCCTTGCGTTTAAGAAATGGGAATGTCGTGAATTTGCATTTGCATTACATGGTTACAACGGAAAACAATAGGTTTGATGATGCTGATGATACATTGGTCAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001965 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009651 GO:0010035 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0055035 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAT

Protein Analysis

196

Amino Acids

22.61

Weight (kDa)

5.32

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22170 AT4G39730
fragaria_vesca	FvH4_1g21150 FvH4_1g21150
malus_domestica	MD01G1027400.v1.1 MD15G1326500.v1.1
prunus_persica	Prupe.6G182600_v2.0.a1
pyrus_communis	pycom01g05540 pycom15g28790
rosa_chinensis	RchiOBHm_Chr2g0114931
rosa_laevigata	RLG00000018136
rosa_multiflora	Rmu_sc0002764.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130460
rosa_rugosa	Rorug02G0191900
rosa_samantha	Rh2AG250700 Rh2BG260100 Rh2CG254900 Rh2DG258800
rosa_wichuraiana	Rw2G019550 Rw2G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	2 cut(s)	269, 409
AcsI	RAATTY	3 cut(s)	370, 514, 585
AcuI	CTGAAG	2 cut(s)	200, 300
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	2 cut(s)	433, 434
AgsI	TTSAA	2 cut(s)	97, 208
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
AlwI	GGATC	2 cut(s)	269, 409
AoxI	GGCC	3 cut(s)	30, 51, 167
ApeKI	GCWGC	2 cut(s)	420, 423
ApoI	RAATTY	3 cut(s)	370, 514, 585
Asp700I	GAANNNNTTC	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	30, 51
AsuHPI	GGTGA	2 cut(s)	424, 474
AsuII	TTCGAA	1 cut(s)	303
BaeI	ACNNNNGTAYC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	432, 435
BccI	CCATC	3 cut(s)	166, 377, 392
BceAI	ACGGC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	194
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	2 cut(s)	421, 424
BlsI	GCNGC	2 cut(s)	422, 425
BmgT120I	GGNCC	2 cut(s)	30, 51
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	553
BmuI	ACTGGG	1 cut(s)	83
Bpu14I	TTCGAA	1 cut(s)	303
BpuEI	CTTGAG	2 cut(s)	184, 257
Bsa29I	ATCGAT	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 434
Bse1I	ACTGG	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	2 cut(s)	73, 158
BseLI	CCNNNNNNNGG	2 cut(s)	433, 434
BseMII	CTCAG	3 cut(s)	33, 143, 192
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	432, 435
BshFI	GGCC	3 cut(s)	32, 53, 169
BshVI	ATCGAT	1 cut(s)	444
BslI	CCNNNNNNNGG	2 cut(s)	433, 434
BsnI	GGCC	3 cut(s)	32, 53, 169
Bsp119I	TTCGAA	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	261, 401, 441
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	3 cut(s)	32, 53, 169
BspCNI	CTCAG	3 cut(s)	34, 144, 193
BspDI	ATCGAT	1 cut(s)	444
BspPI	GGATC	2 cut(s)	269, 409
BspT104I	TTCGAA	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	3 cut(s)	261, 401, 441
BssT1I	CCWWGG	1 cut(s)	33
Bst6I	CTCTTC	2 cut(s)	51, 276
BstBI	TTCGAA	1 cut(s)	303
BstDEI	CTNAG	4 cut(s)	42, 152, 201, 257
BstF5I	GGATG	2 cut(s)	73, 158
BstKTI	GATC	3 cut(s)	264, 404, 444
BstMBI	GATC	3 cut(s)	261, 401, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	432, 435
Bsu15I	ATCGAT	1 cut(s)	444
BsuRI	GGCC	3 cut(s)	32, 53, 169
BsuTUI	ATCGAT	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	73, 158
BtsIMutI	CAGTG	2 cut(s)	149, 457
Cfr13I	GGNCC	2 cut(s)	30, 51
ClaI	ATCGAT	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	1 cut(s)	532
CviJI	RGCY	7 cut(s)	32, 41, 53, 124, 169, 329, 426
CviKI_1	RGCY	7 cut(s)	32, 41, 53, 124, 169, 329, 426
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	4 cut(s)	42, 152, 201, 257
DpnI	GATC	3 cut(s)	263, 403, 443
DpnII	GATC	3 cut(s)	261, 401, 441
Eam1104I	CTCTTC	2 cut(s)	51, 276
EarI	CTCTTC	2 cut(s)	51, 276
Eco130I	CCWWGG	1 cut(s)	33
Eco57I	CTGAAG	2 cut(s)	200, 300
EcoRI	GAATTC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	535
FaiI	YATR	2 cut(s)	393, 533
FatI	CATG	1 cut(s)	531
Fnu4HI	GCNGC	2 cut(s)	421, 424
FokI	GGATG	2 cut(s)	80, 145
Fsp4HI	GCNGC	2 cut(s)	421, 424
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	2 cut(s)	421, 424
HaeIII	GGCC	3 cut(s)	32, 53, 169
Hin1II	CATG	1 cut(s)	535
HinfI	GANTC	2 cut(s)	154, 430
HphI	GGTGA	2 cut(s)	424, 474
Hpy188I	TCNGA	3 cut(s)	11, 219, 382
Hpy188III	TCNNGA	1 cut(s)	511
HpyAV	CCTTC	2 cut(s)	235, 403
HpyCH4V	TGCA	2 cut(s)	520, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	4 cut(s)	42, 152, 201, 257
Hsp92II	CATG	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	261, 401, 441
LpnPI	CCDG	4 cut(s)	38, 59, 360, 419
Lsp1109I	GCAGC	2 cut(s)	432, 435
LweI	GCATC	1 cut(s)	553
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	3 cut(s)	147, 452, 535
MalI	GATC	3 cut(s)	263, 403, 443
MboI	GATC	3 cut(s)	261, 401, 441
MboII	GAAGA	7 cut(s)	68, 101, 232, 260, 293, 317, 451
MluCI	AATT	7 cut(s)	80, 92, 293, 370, 461, 514, 585
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	42
MroXI	GAANNNNTTC	1 cut(s)	370
MseI	TTAA	2 cut(s)	494, 589
MslI	CAYNNNNRTG	1 cut(s)	396
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	3 cut(s)	261, 401, 441
NlaIII	CATG	1 cut(s)	535
NmuCI	GTSAC	2 cut(s)	147, 452
NspV	TTCGAA	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	2 cut(s)	422, 425
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	30, 51
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	494, 589
SatI	GCNGC	2 cut(s)	421, 424
Sau3AI	GATC	3 cut(s)	261, 401, 441
Sau96I	GGNCC	2 cut(s)	30, 51
SchI	GAGTC	1 cut(s)	163
SetI	ASST	5 cut(s)	291, 331, 414, 478, 557
SfaNI	GCATC	1 cut(s)	553
SfuI	TTCGAA	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	163, 236
SmoI	CTYRAG	2 cut(s)	163, 236
Sse9I	AATT	7 cut(s)	80, 92, 293, 370, 461, 514, 585
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	33
TaqI	TCGA	3 cut(s)	128, 303, 444
TasI	AATT	7 cut(s)	80, 92, 293, 370, 461, 514, 585
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	2 cut(s)	494, 589
Tru9I	TTAA	2 cut(s)	494, 589
TscAI	CASTG	2 cut(s)	156, 457
TseFI	GTSAC	2 cut(s)	147, 452
TseI	GCWGC	2 cut(s)	420, 423
Tsp45I	GTSAC	2 cut(s)	147, 452
TspDTI	ATGAA	4 cut(s)	84, 126, 243, 339
TspGWI	ACGGA	1 cut(s)	557
TspRI	CASTG	2 cut(s)	156, 457
XapI	RAATTY	3 cut(s)	370, 514, 585
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.