Lipoxygenase homology domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G22170 AT4G39730 |
| fragaria_vesca | FvH4_1g21150 FvH4_1g21150 |
| malus_domestica | MD01G1027400.v1.1 MD15G1326500.v1.1 |
| prunus_persica | Prupe.6G182600_v2.0.a1 |
| pyrus_communis | pycom01g05540 pycom15g28790 |
| rosa_chinensis | RchiOBHm_Chr2g0114931 |
| rosa_laevigata | RLG00000018136 |
| rosa_multiflora | Rmu_sc0002764.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00130460 |
| rosa_rugosa | Rorug02G0191900 |
| rosa_samantha | Rh2AG250700 Rh2BG260100 Rh2CG254900 Rh2DG258800 |
| rosa_wichuraiana | Rw2G019550 Rw2G019570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 347 |
| AatII | GACGTC | 1 cut(s) | 575 |
| AccB1I | GGYRCC | 1 cut(s) | 527 |
| AccII | CGCG | 2 cut(s) | 477, 662 |
| AciI | CCGC | 6 cut(s) | 18, 394, 471, 475, 477, 660 |
| AclWI | GGATC | 5 cut(s) | 385, 392, 420, 433, 700 |
| AcoI | YGGCCR | 2 cut(s) | 472, 538 |
| AcyI | GRCGYC | 3 cut(s) | 528, 572, 690 |
| AfaI | GTAC | 4 cut(s) | 65, 132, 551, 650 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 414, 666 |
| AflIII | ACRYGT | 1 cut(s) | 108 |
| AgsI | TTSAA | 1 cut(s) | 217 |
| AjnI | CCWGG | 1 cut(s) | 407 |
| AluBI | AGCT | 3 cut(s) | 191, 607, 655 |
| AluI | AGCT | 3 cut(s) | 191, 607, 655 |
| Alw21I | GWGCWC | 1 cut(s) | 25 |
| Alw26I | GTCTC | 3 cut(s) | 62, 170, 352 |
| AlwI | GGATC | 5 cut(s) | 385, 392, 420, 433, 700 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 607 |
| Ama87I | CYCGRG | 1 cut(s) | 718 |
| AoxI | GGCC | 6 cut(s) | 46, 54, 472, 538, 582, 642 |
| ApaI | GGGCCC | 1 cut(s) | 586 |
| ApeKI | GCWGC | 3 cut(s) | 171, 188, 604 |
| AspLEI | GCGC | 2 cut(s) | 506, 530 |
| AspS9I | GGNCC | 7 cut(s) | 54, 312, 479, 582, 583, 643, 711 |
| AsuC2I | CCSGG | 2 cut(s) | 316, 580 |
| AsuHPI | GGTGA | 2 cut(s) | 508, 580 |
| AvaI | CYCGRG | 1 cut(s) | 718 |
| AvaII | GGWCC | 3 cut(s) | 312, 479, 711 |
| BaeGI | GKGCMC | 1 cut(s) | 586 |
| BamHI | GGATCC | 1 cut(s) | 425 |
| BanI | GGYRCC | 1 cut(s) | 527 |
| BanII | GRGCYC | 1 cut(s) | 586 |
| Bbv12I | GWGCWC | 1 cut(s) | 25 |
| BbvI | GCAGC | 3 cut(s) | 183, 200, 616 |
| BccI | CCATC | 3 cut(s) | 3, 415, 518 |
| BceAI | ACGGC | 5 cut(s) | 385, 391, 559, 657, 677 |
| BciT130I | CCWGG | 1 cut(s) | 409 |
| BcnI | CCSGG | 2 cut(s) | 316, 580 |
| BcoDI | GTCTC | 3 cut(s) | 62, 170, 352 |
| BfmI | CTRYAG | 1 cut(s) | 169 |
| BfoI | RGCGCY | 1 cut(s) | 531 |
| BisI | GCNGC | 5 cut(s) | 172, 189, 472, 475, 605 |
| BlsI | GCNGC | 5 cut(s) | 173, 190, 473, 476, 606 |
| Bme1390I | CCNGG | 3 cut(s) | 316, 409, 580 |
| Bme18I | GGWCC | 3 cut(s) | 312, 479, 711 |
| BmeT110I | CYCGRG | 1 cut(s) | 718 |
| BmgT120I | GGNCC | 7 cut(s) | 54, 312, 479, 582, 583, 643, 711 |
| BmiI | GGNNCC | 7 cut(s) | 427, 481, 529, 535, 583, 584, 645 |
| BmrFI | CCNGG | 3 cut(s) | 316, 409, 580 |
| BpuMI | CCSGG | 2 cut(s) | 316, 580 |
| BsaBI | GATNNNNATC | 1 cut(s) | 389 |
| BsaHI | GRCGYC | 3 cut(s) | 528, 572, 690 |
| BsaJI | CCNNGG | 4 cut(s) | 408, 475, 541, 579 |
| BsaWI | WCCGGW | 1 cut(s) | 708 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 503, 533 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 414, 666 |
| Bse118I | RCCGGY | 1 cut(s) | 530 |
| Bse1I | ACTGG | 1 cut(s) | 61 |
| Bse8I | GATNNNNATC | 1 cut(s) | 389 |
| BseBI | CCWGG | 1 cut(s) | 409 |
| BseDI | CCNNGG | 4 cut(s) | 408, 475, 541, 579 |
| BseGI | GGATG | 1 cut(s) | 87 |
| BseJI | GATNNNNATC | 1 cut(s) | 389 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 414, 666 |
| BseNI | ACTGG | 1 cut(s) | 61 |
| BseRI | GAGGAG | 2 cut(s) | 221, 224 |
| BseSI | GKGCMC | 1 cut(s) | 586 |
| BseX3I | CGGCCG | 1 cut(s) | 472 |
| BseXI | GCAGC | 3 cut(s) | 183, 200, 616 |
| Bsh1236I | CGCG | 2 cut(s) | 477, 662 |
| Bsh1285I | CGRYCG | 2 cut(s) | 475, 618 |
| BshFI | GGCC | 6 cut(s) | 48, 56, 474, 540, 584, 644 |
| BshNI | GGYRCC | 1 cut(s) | 527 |
| BsiEI | CGRYCG | 2 cut(s) | 475, 618 |
| BsiHKAI | GWGCWC | 1 cut(s) | 25 |
| BsiHKCI | CYCGRG | 1 cut(s) | 718 |
| BsiSI | CCGG | 6 cut(s) | 315, 531, 537, 579, 709, 714 |
| BsiWI | CGTACG | 1 cut(s) | 648 |
| BslFI | GGGAC | 1 cut(s) | 349 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 414, 666 |
| BsmAI | GTCTC | 3 cut(s) | 62, 170, 352 |
| BsmFI | GGGAC | 1 cut(s) | 349 |
| BsnI | GGCC | 6 cut(s) | 48, 56, 474, 540, 584, 644 |
| BsoBI | CYCGRG | 1 cut(s) | 718 |
| Bsp120I | GGGCCC | 1 cut(s) | 582 |
| Bsp1286I | GDGCHC | 2 cut(s) | 25, 586 |
| Bsp143I | GATC | 6 cut(s) | 384, 390, 425, 615, 663, 705 |
| BspACI | CCGC | 6 cut(s) | 18, 394, 471, 475, 477, 660 |
| BspANI | GGCC | 6 cut(s) | 48, 56, 474, 540, 584, 644 |
| BspFNI | CGCG | 2 cut(s) | 477, 662 |
| BspLI | GGNNCC | 7 cut(s) | 427, 481, 529, 535, 583, 584, 645 |
| BspMAI | CTGCAG | 1 cut(s) | 173 |
| BspPI | GGATC | 5 cut(s) | 385, 392, 420, 433, 700 |
| BspT107I | GGYRCC | 1 cut(s) | 527 |
| BsrFI | RCCGGY | 1 cut(s) | 530 |
| BsrI | ACTGG | 1 cut(s) | 61 |
| BssAI | RCCGGY | 1 cut(s) | 530 |
| BssECI | CCNNGG | 4 cut(s) | 408, 475, 541, 579 |
| BssMI | GATC | 6 cut(s) | 384, 390, 425, 615, 663, 705 |
| BssNI | GRCGYC | 3 cut(s) | 528, 572, 690 |
| Bst2UI | CCWGG | 1 cut(s) | 409 |
| Bst4CI | ACNGT | 2 cut(s) | 130, 301 |
| Bst6I | CTCTTC | 1 cut(s) | 242 |
| BstACI | GRCGYC | 3 cut(s) | 528, 572, 690 |
| BstC8I | GCNNGC | 2 cut(s) | 532, 630 |
| BstDSI | CCRYGG | 2 cut(s) | 475, 541 |
| BstF5I | GGATG | 1 cut(s) | 87 |
| BstFNI | CGCG | 2 cut(s) | 477, 662 |
| BstH2I | RGCGCY | 1 cut(s) | 531 |
| BstHHI | GCGC | 2 cut(s) | 506, 530 |
| BstKTI | GATC | 6 cut(s) | 387, 393, 428, 618, 666, 708 |
| BstMAI | GTCTC | 3 cut(s) | 62, 170, 352 |
| BstMBI | GATC | 6 cut(s) | 384, 390, 425, 615, 663, 705 |
| BstMCI | CGRYCG | 2 cut(s) | 475, 618 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 209, 483 |
| BstNI | CCWGG | 1 cut(s) | 409 |
| BstNSI | RCATGY | 1 cut(s) | 112 |
| BstSCI | CCNGG | 3 cut(s) | 314, 407, 578 |
| BstSFI | CTRYAG | 1 cut(s) | 169 |
| BstSLI | GKGCMC | 1 cut(s) | 586 |
| BstUI | CGCG | 2 cut(s) | 477, 662 |
| BstV1I | GCAGC | 3 cut(s) | 183, 200, 616 |
| BstX2I | RGATCY | 3 cut(s) | 390, 425, 705 |
| BstYI | RGATCY | 3 cut(s) | 390, 425, 705 |
| BstZI | CGGCCG | 1 cut(s) | 472 |
| BsuRI | GGCC | 6 cut(s) | 48, 56, 474, 540, 584, 644 |
| BtgI | CCRYGG | 2 cut(s) | 475, 541 |
| BtgZI | GCGATG | 2 cut(s) | 11, 184 |
| BtsCI | GGATG | 1 cut(s) | 87 |
| BtsI | GCAGTG | 1 cut(s) | 629 |
| BtsIMutI | CAGTG | 1 cut(s) | 629 |
| Cac8I | GCNNGC | 2 cut(s) | 532, 630 |
| CaiI | CAGNNNCTG | 1 cut(s) | 607 |
| CciNI | GCGGCCGC | 1 cut(s) | 472 |
| CfoI | GCGC | 2 cut(s) | 506, 530 |
| Cfr10I | RCCGGY | 1 cut(s) | 530 |
| Cfr13I | GGNCC | 7 cut(s) | 54, 312, 479, 582, 583, 643, 711 |
| Cfr42I | CCGCGG | 1 cut(s) | 478 |
| CpoI | CGGWCCG | 1 cut(s) | 711 |
| CseI | GACGC | 1 cut(s) | 698 |
| Csp6I | GTAC | 4 cut(s) | 64, 131, 550, 649 |
| CspI | CGGWCCG | 1 cut(s) | 711 |
| CviAII | CATG | 1 cut(s) | 109 |
| CviQI | GTAC | 4 cut(s) | 64, 131, 550, 649 |
| DinI | GGCGCC | 1 cut(s) | 529 |
| DpnI | GATC | 6 cut(s) | 386, 392, 427, 617, 665, 707 |
| DpnII | GATC | 6 cut(s) | 384, 390, 425, 615, 663, 705 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 347 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 347 |
| EaeI | YGGCCR | 2 cut(s) | 472, 538 |
| EagI | CGGCCG | 1 cut(s) | 472 |
| Eam1104I | CTCTTC | 1 cut(s) | 242 |
| EarI | CTCTTC | 1 cut(s) | 242 |
| EclXI | CGGCCG | 1 cut(s) | 472 |
| Eco147I | AGGCCT | 1 cut(s) | 48 |
| Eco24I | GRGCYC | 1 cut(s) | 586 |
| Eco47I | GGWCC | 3 cut(s) | 312, 479, 711 |
| Eco52I | CGGCCG | 1 cut(s) | 472 |
| Eco88I | CYCGRG | 1 cut(s) | 718 |
| EcoO109I | RGGNCCY | 1 cut(s) | 582 |
| EcoRII | CCWGG | 1 cut(s) | 407 |
| EcoT38I | GRGCYC | 1 cut(s) | 586 |
| EgeI | GGCGCC | 1 cut(s) | 529 |
| EheI | GGCGCC | 1 cut(s) | 529 |
| FaeI | CATG | 1 cut(s) | 112 |
| FaiI | YATR | 7 cut(s) | 110, 143, 155, 157, 159, 588, 590 |
| FaqI | GGGAC | 1 cut(s) | 349 |
| FatI | CATG | 1 cut(s) | 108 |
| Fnu4HI | GCNGC | 5 cut(s) | 172, 189, 472, 475, 605 |
| FokI | GGATG | 1 cut(s) | 74 |
| FriOI | GRGCYC | 1 cut(s) | 586 |
| Fsp4HI | GCNGC | 5 cut(s) | 172, 189, 472, 475, 605 |
| GlaI | GCGC | 2 cut(s) | 505, 529 |
| GluI | GCNGC | 5 cut(s) | 172, 189, 472, 475, 605 |
| HaeII | RGCGCY | 1 cut(s) | 531 |
| HaeIII | GGCC | 6 cut(s) | 48, 56, 474, 540, 584, 644 |
| HapII | CCGG | 6 cut(s) | 315, 531, 537, 579, 709, 714 |
| HgaI | GACGC | 1 cut(s) | 698 |
| HhaI | GCGC | 2 cut(s) | 506, 530 |
| Hin1I | GRCGYC | 3 cut(s) | 528, 572, 690 |
| Hin1II | CATG | 1 cut(s) | 112 |
| Hin6I | GCGC | 2 cut(s) | 504, 528 |
| HinP1I | GCGC | 2 cut(s) | 504, 528 |
| HincII | GTYRAC | 3 cut(s) | 114, 352, 556 |
| HindII | GTYRAC | 3 cut(s) | 114, 352, 556 |
| HinfI | GANTC | 3 cut(s) | 228, 341, 360 |
| HpaII | CCGG | 6 cut(s) | 315, 531, 537, 579, 709, 714 |
| HphI | GGTGA | 2 cut(s) | 508, 580 |
| Hpy166II | GTNNAC | 7 cut(s) | 114, 295, 304, 352, 556, 576, 612 |
| Hpy188I | TCNGA | 3 cut(s) | 277, 430, 523 |
| Hpy188III | TCNNGA | 4 cut(s) | 388, 458, 613, 667 |
| Hpy8I | GTNNAC | 7 cut(s) | 114, 295, 304, 352, 556, 576, 612 |
| Hpy99I | CGWCG | 3 cut(s) | 371, 692, 698 |
| HpyAV | CCTTC | 1 cut(s) | 38 |
| HpyCH4III | ACNGT | 2 cut(s) | 130, 301 |
| HpyCH4IV | ACGT | 7 cut(s) | 136, 306, 348, 354, 552, 561, 572 |
| HpyCH4V | TGCA | 2 cut(s) | 171, 678 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 209, 483 |
| HpySE526I | ACGT | 7 cut(s) | 136, 306, 348, 354, 552, 561, 572 |
| Hsp92I | GRCGYC | 3 cut(s) | 528, 572, 690 |
| Hsp92II | CATG | 1 cut(s) | 112 |
| HspAI | GCGC | 2 cut(s) | 504, 528 |
| KasI | GGCGCC | 1 cut(s) | 527 |
| KroI | GCCGGC | 1 cut(s) | 530 |
| KroNI | GCCGGC | 1 cut(s) | 532 |
| KspI | CCGCGG | 1 cut(s) | 478 |
| Kzo9I | GATC | 6 cut(s) | 384, 390, 425, 615, 663, 705 |
| LmnI | GCTCC | 1 cut(s) | 539 |
| Lsp1109I | GCAGC | 3 cut(s) | 183, 200, 616 |
| MaeII | ACGT | 7 cut(s) | 136, 306, 348, 354, 552, 561, 572 |
| MaeIII | GTNAC | 1 cut(s) | 568 |
| MalI | GATC | 6 cut(s) | 386, 392, 427, 617, 665, 707 |
| MboI | GATC | 6 cut(s) | 384, 390, 425, 615, 663, 705 |
| MboII | GAAGA | 2 cut(s) | 229, 715 |
| MflI | RGATCY | 3 cut(s) | 390, 425, 705 |
| MhlI | GDGCHC | 2 cut(s) | 25, 586 |
| Mly113I | GGCGCC | 1 cut(s) | 528 |
| MlyI | GAGTC | 3 cut(s) | 222, 335, 354 |
| MmeI | TCCRAC | 2 cut(s) | 369, 453 |
| MroNI | GCCGGC | 1 cut(s) | 530 |
| MseI | TTAA | 1 cut(s) | 183 |
| MspA1I | CMGCKG | 3 cut(s) | 471, 477, 607 |
| MspI | CCGG | 6 cut(s) | 315, 531, 537, 579, 709, 714 |
| MspR9I | CCNGG | 3 cut(s) | 316, 409, 580 |
| MvaI | CCWGG | 1 cut(s) | 409 |
| MvnI | CGCG | 2 cut(s) | 477, 662 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 209, 483 |
| NaeI | GCCGGC | 1 cut(s) | 532 |
| NarI | GGCGCC | 1 cut(s) | 528 |
| NciI | CCSGG | 2 cut(s) | 316, 580 |
| NdeII | GATC | 6 cut(s) | 384, 390, 425, 615, 663, 705 |
| NgoMIV | GCCGGC | 1 cut(s) | 530 |
| NlaIII | CATG | 1 cut(s) | 112 |
| NlaIV | GGNNCC | 7 cut(s) | 427, 481, 529, 535, 583, 584, 645 |
| NmuCI | GTSAC | 1 cut(s) | 568 |
| NotI | GCGGCCGC | 1 cut(s) | 472 |
| NspI | RCATGY | 1 cut(s) | 112 |
| PaeR7I | CTCGAG | 1 cut(s) | 718 |
| PceI | AGGCCT | 1 cut(s) | 48 |
| PciI | ACATGT | 1 cut(s) | 108 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 549, 558, 693 |
| PdiI | GCCGGC | 1 cut(s) | 532 |
| Pfl23II | CGTACG | 1 cut(s) | 648 |
| PflFI | GACNNNGTC | 2 cut(s) | 316, 692 |
| PkrI | GCNGC | 5 cut(s) | 173, 190, 473, 476, 606 |
| Ple19I | CGATCG | 1 cut(s) | 618 |
| PleI | GAGTC | 3 cut(s) | 222, 335, 354 |
| PluTI | GGCGCC | 1 cut(s) | 531 |
| PpsI | GAGTC | 3 cut(s) | 222, 335, 354 |
| PscI | ACATGT | 1 cut(s) | 108 |
| Psp6I | CCWGG | 1 cut(s) | 407 |
| PspGI | CCWGG | 1 cut(s) | 407 |
| PspLI | CGTACG | 1 cut(s) | 648 |
| PspN4I | GGNNCC | 7 cut(s) | 427, 481, 529, 535, 583, 584, 645 |
| PspOMI | GGGCCC | 1 cut(s) | 582 |
| PspPI | GGNCC | 7 cut(s) | 54, 312, 479, 582, 583, 643, 711 |
| PspXI | VCTCGAGB | 1 cut(s) | 718 |
| PstI | CTGCAG | 1 cut(s) | 173 |
| PstNI | CAGNNNCTG | 1 cut(s) | 607 |
| PsuI | RGATCY | 3 cut(s) | 390, 425, 705 |
| PsyI | GACNNNGTC | 2 cut(s) | 316, 692 |
| PvuI | CGATCG | 1 cut(s) | 618 |
| PvuII | CAGCTG | 1 cut(s) | 607 |
| RsaI | GTAC | 4 cut(s) | 65, 132, 551, 650 |
| RsaNI | GTAC | 4 cut(s) | 64, 131, 550, 649 |
| Rsr2I | CGGWCCG | 1 cut(s) | 711 |
| RsrII | CGGWCCG | 1 cut(s) | 711 |
| SacII | CCGCGG | 1 cut(s) | 478 |
| SaqAI | TTAA | 1 cut(s) | 183 |
| SatI | GCNGC | 5 cut(s) | 172, 189, 472, 475, 605 |
| Sau3AI | GATC | 6 cut(s) | 384, 390, 425, 615, 663, 705 |
| Sau96I | GGNCC | 7 cut(s) | 54, 312, 479, 582, 583, 643, 711 |
| SchI | GAGTC | 3 cut(s) | 222, 335, 354 |
| ScrFI | CCNGG | 3 cut(s) | 316, 409, 580 |
| SduI | GDGCHC | 2 cut(s) | 25, 586 |
| SfcI | CTRYAG | 1 cut(s) | 169 |
| SfoI | GGCGCC | 1 cut(s) | 529 |
| Sfr274I | CTCGAG | 1 cut(s) | 718 |
| Sfr303I | CCGCGG | 1 cut(s) | 478 |
| SgrBI | CCGCGG | 1 cut(s) | 478 |
| SinI | GGWCC | 3 cut(s) | 312, 479, 711 |
| SlaI | CTCGAG | 1 cut(s) | 718 |
| SmlI | CTYRAG | 1 cut(s) | 718 |
| SmoI | CTYRAG | 1 cut(s) | 718 |
| SseBI | AGGCCT | 1 cut(s) | 48 |
| SsiI | CCGC | 6 cut(s) | 18, 394, 471, 475, 477, 660 |
| SspDI | GGCGCC | 1 cut(s) | 527 |
| StuI | AGGCCT | 1 cut(s) | 48 |
| StyD4I | CCNGG | 3 cut(s) | 314, 407, 578 |
| TaaI | ACNGT | 2 cut(s) | 130, 301 |
| TaiI | ACGT | 7 cut(s) | 139, 309, 351, 357, 555, 564, 575 |
| TaqI | TCGA | 5 cut(s) | 387, 402, 618, 696, 719 |
| TatI | WGTACW | 1 cut(s) | 130 |
| TauI | GCSGC | 2 cut(s) | 474, 477 |
| Tru1I | TTAA | 1 cut(s) | 183 |
| Tru9I | TTAA | 1 cut(s) | 183 |
| TscAI | CASTG | 1 cut(s) | 629 |
| TseFI | GTSAC | 1 cut(s) | 568 |
| TseI | GCWGC | 3 cut(s) | 171, 188, 604 |
| Tsp45I | GTSAC | 1 cut(s) | 568 |
| TspDTI | ATGAA | 2 cut(s) | 17, 723 |
| TspGWI | ACGGA | 1 cut(s) | 353 |
| TspRI | CASTG | 1 cut(s) | 629 |
| Tth111I | GACNNNGTC | 2 cut(s) | 316, 692 |
| VpaK11BI | GGWCC | 3 cut(s) | 312, 479, 711 |
| XceI | RCATGY | 1 cut(s) | 112 |
| XhoI | CTCGAG | 1 cut(s) | 718 |
| ZraI | GACGTC | 1 cut(s) | 573 |