Rh2BG260100

Lipoxygenase homology domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
27595764 .. 27597269
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG260100.1

Sequence Viewer

Length: 744 bp
ATGAAAAGATGGCAAAGCGGTGCTCATCGCTCAATGTGGAAAGAAGGCCTCTGGGCCAACCAGTACGAGACACCAAATGACCAAATCATCCCCGAAAGCATTATCCACATGTTGACAATACACAAAACAGTACAACGTGATATGATTTGTAATATATATAAAAGTCTCTGCAGCCCCAAACTTAACGCAGCTTCACTCATCGCAACAATGGCGTTCAACATCAACAGACTCCTCCTCTTCCTCTCCCTCTCCCTCTCGCTCACTCTCGCTTTCTCTGACGACCCCGATTGTGTTTACACGGTTTACGTTAGGACCGGGTCAATCATCAAGGGAGGGACGGACTCCAACGTCAACGTGAGACTCTACGACGGCTACGGCTACGGGATCGAGATCCGCAACCTCGAAGCCTGGGGAGGGTTGATGGGATCCGACTACGACTACTTTGAGAGGGGCAATCTTGACATTTTCAGCGGCCGCGGACCCTGCCTCAACGCCCCTATCTGCGCTCTCAACCTCACCTCCGATGGCGCCGGCTCCGGCCACGGCTGGTACGTCAACTACGTTGAGGTGACGTCCACCGGGGCCCATATACCTTGCCACCAGCAGCTGTTCACGATCGAGCAGTGGCTCGCCACCGATACGGCCCCGTACGAGCTTACCGCGATCAGGAACTACTGCAACAATAACGACGCCGTCGATGAGAAGATCCGGTCCGGCTCGAGTGGTTTGGTTTCATCTGTTTAG

Protein Analysis

247

Amino Acids

27.43

Weight (kDa)

5.46

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 90 - 195 2.1e-08 Embryo-specific protein 3, (ATS3)
PLAT PF01477 99 - 217 5.2e-08 PLAT/LH2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011024)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AatII GACGTC 1 cut(s) 575
AccB1I GGYRCC 1 cut(s) 527
AccII CGCG 2 cut(s) 477, 662
AciI CCGC 6 cut(s) 18, 394, 471, 475, 477, 660
AclWI GGATC 5 cut(s) 385, 392, 420, 433, 700
AcoI YGGCCR 2 cut(s) 472, 538
AcyI GRCGYC 3 cut(s) 528, 572, 690
AfaI GTAC 4 cut(s) 65, 132, 551, 650
AfiI CCNNNNNNNGG 2 cut(s) 414, 666
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 407
AluBI AGCT 3 cut(s) 191, 607, 655
AluI AGCT 3 cut(s) 191, 607, 655
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 3 cut(s) 62, 170, 352
AlwI GGATC 5 cut(s) 385, 392, 420, 433, 700
AlwNI CAGNNNCTG 1 cut(s) 607
Ama87I CYCGRG 1 cut(s) 718
AoxI GGCC 6 cut(s) 46, 54, 472, 538, 582, 642
ApaI GGGCCC 1 cut(s) 586
ApeKI GCWGC 3 cut(s) 171, 188, 604
AspLEI GCGC 2 cut(s) 506, 530
AspS9I GGNCC 7 cut(s) 54, 312, 479, 582, 583, 643, 711
AsuC2I CCSGG 2 cut(s) 316, 580
AsuHPI GGTGA 2 cut(s) 508, 580
AvaI CYCGRG 1 cut(s) 718
AvaII GGWCC 3 cut(s) 312, 479, 711
BaeGI GKGCMC 1 cut(s) 586
BamHI GGATCC 1 cut(s) 425
BanI GGYRCC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 586
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 3 cut(s) 183, 200, 616
BccI CCATC 3 cut(s) 3, 415, 518
BceAI ACGGC 5 cut(s) 385, 391, 559, 657, 677
BciT130I CCWGG 1 cut(s) 409
BcnI CCSGG 2 cut(s) 316, 580
BcoDI GTCTC 3 cut(s) 62, 170, 352
BfmI CTRYAG 1 cut(s) 169
BfoI RGCGCY 1 cut(s) 531
BisI GCNGC 5 cut(s) 172, 189, 472, 475, 605
BlsI GCNGC 5 cut(s) 173, 190, 473, 476, 606
Bme1390I CCNGG 3 cut(s) 316, 409, 580
Bme18I GGWCC 3 cut(s) 312, 479, 711
BmeT110I CYCGRG 1 cut(s) 718
BmgT120I GGNCC 7 cut(s) 54, 312, 479, 582, 583, 643, 711
BmiI GGNNCC 7 cut(s) 427, 481, 529, 535, 583, 584, 645
BmrFI CCNGG 3 cut(s) 316, 409, 580
BpuMI CCSGG 2 cut(s) 316, 580
BsaBI GATNNNNATC 1 cut(s) 389
BsaHI GRCGYC 3 cut(s) 528, 572, 690
BsaJI CCNNGG 4 cut(s) 408, 475, 541, 579
BsaWI WCCGGW 1 cut(s) 708
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 666
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 1 cut(s) 61
Bse8I GATNNNNATC 1 cut(s) 389
BseBI CCWGG 1 cut(s) 409
BseDI CCNNGG 4 cut(s) 408, 475, 541, 579
BseGI GGATG 1 cut(s) 87
BseJI GATNNNNATC 1 cut(s) 389
BseLI CCNNNNNNNGG 2 cut(s) 414, 666
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 2 cut(s) 221, 224
BseSI GKGCMC 1 cut(s) 586
BseX3I CGGCCG 1 cut(s) 472
BseXI GCAGC 3 cut(s) 183, 200, 616
Bsh1236I CGCG 2 cut(s) 477, 662
Bsh1285I CGRYCG 2 cut(s) 475, 618
BshFI GGCC 6 cut(s) 48, 56, 474, 540, 584, 644
BshNI GGYRCC 1 cut(s) 527
BsiEI CGRYCG 2 cut(s) 475, 618
BsiHKAI GWGCWC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 718
BsiSI CCGG 6 cut(s) 315, 531, 537, 579, 709, 714
BsiWI CGTACG 1 cut(s) 648
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 2 cut(s) 414, 666
BsmAI GTCTC 3 cut(s) 62, 170, 352
BsmFI GGGAC 1 cut(s) 349
BsnI GGCC 6 cut(s) 48, 56, 474, 540, 584, 644
BsoBI CYCGRG 1 cut(s) 718
Bsp120I GGGCCC 1 cut(s) 582
Bsp1286I GDGCHC 2 cut(s) 25, 586
Bsp143I GATC 6 cut(s) 384, 390, 425, 615, 663, 705
BspACI CCGC 6 cut(s) 18, 394, 471, 475, 477, 660
BspANI GGCC 6 cut(s) 48, 56, 474, 540, 584, 644
BspFNI CGCG 2 cut(s) 477, 662
BspLI GGNNCC 7 cut(s) 427, 481, 529, 535, 583, 584, 645
BspMAI CTGCAG 1 cut(s) 173
BspPI GGATC 5 cut(s) 385, 392, 420, 433, 700
BspT107I GGYRCC 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 4 cut(s) 408, 475, 541, 579
BssMI GATC 6 cut(s) 384, 390, 425, 615, 663, 705
BssNI GRCGYC 3 cut(s) 528, 572, 690
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 2 cut(s) 130, 301
Bst6I CTCTTC 1 cut(s) 242
BstACI GRCGYC 3 cut(s) 528, 572, 690
BstC8I GCNNGC 2 cut(s) 532, 630
BstDSI CCRYGG 2 cut(s) 475, 541
BstF5I GGATG 1 cut(s) 87
BstFNI CGCG 2 cut(s) 477, 662
BstH2I RGCGCY 1 cut(s) 531
BstHHI GCGC 2 cut(s) 506, 530
BstKTI GATC 6 cut(s) 387, 393, 428, 618, 666, 708
BstMAI GTCTC 3 cut(s) 62, 170, 352
BstMBI GATC 6 cut(s) 384, 390, 425, 615, 663, 705
BstMCI CGRYCG 2 cut(s) 475, 618
BstMWI GCNNNNNNNGC 2 cut(s) 209, 483
BstNI CCWGG 1 cut(s) 409
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 3 cut(s) 314, 407, 578
BstSFI CTRYAG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 586
BstUI CGCG 2 cut(s) 477, 662
BstV1I GCAGC 3 cut(s) 183, 200, 616
BstX2I RGATCY 3 cut(s) 390, 425, 705
BstYI RGATCY 3 cut(s) 390, 425, 705
BstZI CGGCCG 1 cut(s) 472
BsuRI GGCC 6 cut(s) 48, 56, 474, 540, 584, 644
BtgI CCRYGG 2 cut(s) 475, 541
BtgZI GCGATG 2 cut(s) 11, 184
BtsCI GGATG 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 629
BtsIMutI CAGTG 1 cut(s) 629
Cac8I GCNNGC 2 cut(s) 532, 630
CaiI CAGNNNCTG 1 cut(s) 607
CciNI GCGGCCGC 1 cut(s) 472
CfoI GCGC 2 cut(s) 506, 530
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 7 cut(s) 54, 312, 479, 582, 583, 643, 711
Cfr42I CCGCGG 1 cut(s) 478
CpoI CGGWCCG 1 cut(s) 711
CseI GACGC 1 cut(s) 698
Csp6I GTAC 4 cut(s) 64, 131, 550, 649
CspI CGGWCCG 1 cut(s) 711
CviAII CATG 1 cut(s) 109
CviQI GTAC 4 cut(s) 64, 131, 550, 649
DinI GGCGCC 1 cut(s) 529
DpnI GATC 6 cut(s) 386, 392, 427, 617, 665, 707
DpnII GATC 6 cut(s) 384, 390, 425, 615, 663, 705
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 2 cut(s) 472, 538
EagI CGGCCG 1 cut(s) 472
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
EclXI CGGCCG 1 cut(s) 472
Eco147I AGGCCT 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 586
Eco47I GGWCC 3 cut(s) 312, 479, 711
Eco52I CGGCCG 1 cut(s) 472
Eco88I CYCGRG 1 cut(s) 718
EcoO109I RGGNCCY 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 407
EcoT38I GRGCYC 1 cut(s) 586
EgeI GGCGCC 1 cut(s) 529
EheI GGCGCC 1 cut(s) 529
FaeI CATG 1 cut(s) 112
FaiI YATR 7 cut(s) 110, 143, 155, 157, 159, 588, 590
FaqI GGGAC 1 cut(s) 349
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 5 cut(s) 172, 189, 472, 475, 605
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 586
Fsp4HI GCNGC 5 cut(s) 172, 189, 472, 475, 605
GlaI GCGC 2 cut(s) 505, 529
GluI GCNGC 5 cut(s) 172, 189, 472, 475, 605
HaeII RGCGCY 1 cut(s) 531
HaeIII GGCC 6 cut(s) 48, 56, 474, 540, 584, 644
HapII CCGG 6 cut(s) 315, 531, 537, 579, 709, 714
HgaI GACGC 1 cut(s) 698
HhaI GCGC 2 cut(s) 506, 530
Hin1I GRCGYC 3 cut(s) 528, 572, 690
Hin1II CATG 1 cut(s) 112
Hin6I GCGC 2 cut(s) 504, 528
HinP1I GCGC 2 cut(s) 504, 528
HincII GTYRAC 3 cut(s) 114, 352, 556
HindII GTYRAC 3 cut(s) 114, 352, 556
HinfI GANTC 3 cut(s) 228, 341, 360
HpaII CCGG 6 cut(s) 315, 531, 537, 579, 709, 714
HphI GGTGA 2 cut(s) 508, 580
Hpy166II GTNNAC 7 cut(s) 114, 295, 304, 352, 556, 576, 612
Hpy188I TCNGA 3 cut(s) 277, 430, 523
Hpy188III TCNNGA 4 cut(s) 388, 458, 613, 667
Hpy8I GTNNAC 7 cut(s) 114, 295, 304, 352, 556, 576, 612
Hpy99I CGWCG 3 cut(s) 371, 692, 698
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 130, 301
HpyCH4IV ACGT 7 cut(s) 136, 306, 348, 354, 552, 561, 572
HpyCH4V TGCA 2 cut(s) 171, 678
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 483
HpySE526I ACGT 7 cut(s) 136, 306, 348, 354, 552, 561, 572
Hsp92I GRCGYC 3 cut(s) 528, 572, 690
Hsp92II CATG 1 cut(s) 112
HspAI GCGC 2 cut(s) 504, 528
KasI GGCGCC 1 cut(s) 527
KroI GCCGGC 1 cut(s) 530
KroNI GCCGGC 1 cut(s) 532
KspI CCGCGG 1 cut(s) 478
Kzo9I GATC 6 cut(s) 384, 390, 425, 615, 663, 705
LmnI GCTCC 1 cut(s) 539
Lsp1109I GCAGC 3 cut(s) 183, 200, 616
MaeII ACGT 7 cut(s) 136, 306, 348, 354, 552, 561, 572
MaeIII GTNAC 1 cut(s) 568
MalI GATC 6 cut(s) 386, 392, 427, 617, 665, 707
MboI GATC 6 cut(s) 384, 390, 425, 615, 663, 705
MboII GAAGA 2 cut(s) 229, 715
MflI RGATCY 3 cut(s) 390, 425, 705
MhlI GDGCHC 2 cut(s) 25, 586
Mly113I GGCGCC 1 cut(s) 528
MlyI GAGTC 3 cut(s) 222, 335, 354
MmeI TCCRAC 2 cut(s) 369, 453
MroNI GCCGGC 1 cut(s) 530
MseI TTAA 1 cut(s) 183
MspA1I CMGCKG 3 cut(s) 471, 477, 607
MspI CCGG 6 cut(s) 315, 531, 537, 579, 709, 714
MspR9I CCNGG 3 cut(s) 316, 409, 580
MvaI CCWGG 1 cut(s) 409
MvnI CGCG 2 cut(s) 477, 662
MwoI GCNNNNNNNGC 2 cut(s) 209, 483
NaeI GCCGGC 1 cut(s) 532
NarI GGCGCC 1 cut(s) 528
NciI CCSGG 2 cut(s) 316, 580
NdeII GATC 6 cut(s) 384, 390, 425, 615, 663, 705
NgoMIV GCCGGC 1 cut(s) 530
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 7 cut(s) 427, 481, 529, 535, 583, 584, 645
NmuCI GTSAC 1 cut(s) 568
NotI GCGGCCGC 1 cut(s) 472
NspI RCATGY 1 cut(s) 112
PaeR7I CTCGAG 1 cut(s) 718
PceI AGGCCT 1 cut(s) 48
PciI ACATGT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 3 cut(s) 549, 558, 693
PdiI GCCGGC 1 cut(s) 532
Pfl23II CGTACG 1 cut(s) 648
PflFI GACNNNGTC 2 cut(s) 316, 692
PkrI GCNGC 5 cut(s) 173, 190, 473, 476, 606
Ple19I CGATCG 1 cut(s) 618
PleI GAGTC 3 cut(s) 222, 335, 354
PluTI GGCGCC 1 cut(s) 531
PpsI GAGTC 3 cut(s) 222, 335, 354
PscI ACATGT 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 407
PspGI CCWGG 1 cut(s) 407
PspLI CGTACG 1 cut(s) 648
PspN4I GGNNCC 7 cut(s) 427, 481, 529, 535, 583, 584, 645
PspOMI GGGCCC 1 cut(s) 582
PspPI GGNCC 7 cut(s) 54, 312, 479, 582, 583, 643, 711
PspXI VCTCGAGB 1 cut(s) 718
PstI CTGCAG 1 cut(s) 173
PstNI CAGNNNCTG 1 cut(s) 607
PsuI RGATCY 3 cut(s) 390, 425, 705
PsyI GACNNNGTC 2 cut(s) 316, 692
PvuI CGATCG 1 cut(s) 618
PvuII CAGCTG 1 cut(s) 607
RsaI GTAC 4 cut(s) 65, 132, 551, 650
RsaNI GTAC 4 cut(s) 64, 131, 550, 649
Rsr2I CGGWCCG 1 cut(s) 711
RsrII CGGWCCG 1 cut(s) 711
SacII CCGCGG 1 cut(s) 478
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 5 cut(s) 172, 189, 472, 475, 605
Sau3AI GATC 6 cut(s) 384, 390, 425, 615, 663, 705
Sau96I GGNCC 7 cut(s) 54, 312, 479, 582, 583, 643, 711
SchI GAGTC 3 cut(s) 222, 335, 354
ScrFI CCNGG 3 cut(s) 316, 409, 580
SduI GDGCHC 2 cut(s) 25, 586
SfcI CTRYAG 1 cut(s) 169
SfoI GGCGCC 1 cut(s) 529
Sfr274I CTCGAG 1 cut(s) 718
Sfr303I CCGCGG 1 cut(s) 478
SgrBI CCGCGG 1 cut(s) 478
SinI GGWCC 3 cut(s) 312, 479, 711
SlaI CTCGAG 1 cut(s) 718
SmlI CTYRAG 1 cut(s) 718
SmoI CTYRAG 1 cut(s) 718
SseBI AGGCCT 1 cut(s) 48
SsiI CCGC 6 cut(s) 18, 394, 471, 475, 477, 660
SspDI GGCGCC 1 cut(s) 527
StuI AGGCCT 1 cut(s) 48
StyD4I CCNGG 3 cut(s) 314, 407, 578
TaaI ACNGT 2 cut(s) 130, 301
TaiI ACGT 7 cut(s) 139, 309, 351, 357, 555, 564, 575
TaqI TCGA 5 cut(s) 387, 402, 618, 696, 719
TatI WGTACW 1 cut(s) 130
TauI GCSGC 2 cut(s) 474, 477
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 629
TseFI GTSAC 1 cut(s) 568
TseI GCWGC 3 cut(s) 171, 188, 604
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 2 cut(s) 17, 723
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 1 cut(s) 629
Tth111I GACNNNGTC 2 cut(s) 316, 692
VpaK11BI GGWCC 3 cut(s) 312, 479, 711
XceI RCATGY 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 718
ZraI GACGTC 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.