Prupe.6G182600_v2.0.a1

Lipoxygenase homology domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
19000014 .. 19001124
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G182600.1

Sequence Viewer

Length: 717 bp
ATGACCAAATCATCCCCAACAGACATCGACCTGGGCCAATACACAAAAATAGCACGTGATTTTTTCACCCCCAAAAAAAGAAAATTAGCTAATATCATTTCCACTATAAAAAAGCCTCTCCTATACATCACACTCAGCAAAGCTTCACTCATGGCAAAAATGACATCCCCCAGCAACACTCTCTTCTTCTCCCTCCTTCTCTCCCTCTTCCTCACCCTCGCTTTCTCCGACGACCCGGATTGCGTGTACACGGTCTACGTTAGGACCGGGTCGATCTTAAAGGGCGGGACGGACTCCAACGCCAACGTCCGGCTCTACGACGCGTATGGCTACGGGATCGAGATCCGGAACCTCGAGACCTGGGGCGGGTTGATGGGCCCCGGTCACAACTACTTCGAGAGGGGCAATTTGGACATTTTTAGCGGCCGCGGACCCTGCCTCCAAGCCCCCATCTGCGCCCTGAACCTCACCTCCGACGGATCCGGGCCCCACCACGGCTGGTACATCAACTACGTCGAGGTCACCTCCACTGGGGCCCACATTCCTTGCAGCCAACAGCTCTTCACGATCGAGCAGTGGCTGGCCACCGATACGTCCCCGTACGAGCTCACCGCTGTTAGGAATTACTGTAACTCGGATGATGACGGTGTCCAGAAACGGCGTCATACTCACCGCATGATCCGGTCCGGTTCGAGCGATTTGGTTTCTGCTGTTTAA

Protein Analysis

239

Amino Acids

26.38

Weight (kDa)

8.22

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011024)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 255
AccII CGCG 2 cut(s) 323, 429
AccIII TCCGGA 1 cut(s) 345
AciI CCGC 7 cut(s) 285, 366, 423, 427, 429, 612, 673
AclWI GGATC 5 cut(s) 337, 344, 474, 487, 673
AcoI YGGCCR 2 cut(s) 424, 582
AcvI CACGTG 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 661
AfaI GTAC 3 cut(s) 248, 503, 602
AfiI CCNNNNNNNGG 5 cut(s) 309, 366, 494, 531, 618
AflIII ACRYGT 1 cut(s) 321
AjnI CCWGG 2 cut(s) 30, 359
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
AluBI AGCT 4 cut(s) 89, 143, 559, 607
AluI AGCT 4 cut(s) 89, 143, 559, 607
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 5 cut(s) 337, 344, 474, 487, 673
AlwNI CAGNNNCTG 1 cut(s) 580
Ama87I CYCGRG 1 cut(s) 353
Aor13HI TCCGGA 1 cut(s) 345
AoxI GGCC 6 cut(s) 34, 376, 424, 485, 534, 582
ApaI GGGCCC 3 cut(s) 380, 489, 538
ApeKI GCWGC 1 cut(s) 549
AspLEI GCGC 1 cut(s) 458
AsuC2I CCSGG 4 cut(s) 236, 268, 381, 484
AsuHPI GGTGA 6 cut(s) 58, 205, 460, 514, 601, 662
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 3 cut(s) 264, 431, 684
BaeGI GKGCMC 3 cut(s) 380, 489, 538
BalI TGGCCA 1 cut(s) 584
BamHI GGATCC 1 cut(s) 479
BanII GRGCYC 4 cut(s) 380, 489, 538, 609
BbrPI CACGTG 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 1 cut(s) 561
BccI CCATC 2 cut(s) 367, 458
BceAI ACGGC 2 cut(s) 511, 674
BciT130I CCWGG 2 cut(s) 32, 361
BcnI CCSGG 4 cut(s) 236, 268, 381, 484
BcoDI GTCTC 1 cut(s) 350
BisI GCNGC 3 cut(s) 424, 427, 550
BlsI GCNGC 3 cut(s) 425, 428, 551
Bme1390I CCNGG 6 cut(s) 32, 236, 268, 361, 381, 484
Bme18I GGWCC 3 cut(s) 264, 431, 684
BmeT110I CYCGRG 1 cut(s) 353
BmiI GGNNCC 9 cut(s) 350, 378, 379, 433, 481, 487, 488, 535, 536
BmrFI CCNGG 6 cut(s) 32, 236, 268, 361, 381, 484
BmrI ACTGGG 1 cut(s) 540
BmuI ACTGGG 1 cut(s) 540
BplI GAGNNNNNCTC 2 cut(s) 509, 541
BpuMI CCSGG 4 cut(s) 236, 268, 381, 484
BsaAI YACGTR 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 661
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 5 cut(s) 31, 360, 379, 427, 493
BsaWI WCCGGW 3 cut(s) 345, 681, 686
BsaXI ACNNNNNCTCC 4 cut(s) 423, 453, 455, 485
Bsc4I CCNNNNNNNGG 5 cut(s) 309, 366, 494, 531, 618
Bse1I ACTGG 1 cut(s) 535
Bse8I GATNNNNATC 1 cut(s) 341
BseAI TCCGGA 1 cut(s) 345
BseBI CCWGG 2 cut(s) 32, 361
BseDI CCNNGG 5 cut(s) 31, 360, 379, 427, 493
BseGI GGATG 3 cut(s) 11, 164, 643
BseJI GATNNNNATC 1 cut(s) 341
BseLI CCNNNNNNNGG 5 cut(s) 309, 366, 494, 531, 618
BseMII CTCAG 1 cut(s) 148
BseNI ACTGG 1 cut(s) 535
BseSI GKGCMC 3 cut(s) 380, 489, 538
BseX3I CGGCCG 1 cut(s) 424
BseXI GCAGC 1 cut(s) 561
BseYI CCCAGC 1 cut(s) 170
Bsh1236I CGCG 2 cut(s) 323, 429
Bsh1285I CGRYCG 2 cut(s) 427, 570
BshFI GGCC 6 cut(s) 36, 378, 426, 487, 536, 584
BsiEI CGRYCG 2 cut(s) 427, 570
BsiHKAI GWGCWC 1 cut(s) 609
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 8 cut(s) 236, 267, 310, 346, 381, 483, 682, 687
BsiWI CGTACG 1 cut(s) 600
BslFI GGGAC 2 cut(s) 301, 580
BslI CCNNNNNNNGG 5 cut(s) 309, 366, 494, 531, 618
BsmAI GTCTC 1 cut(s) 350
BsmFI GGGAC 2 cut(s) 301, 580
BsnI GGCC 6 cut(s) 36, 378, 426, 487, 536, 584
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 353
Bsp120I GGGCCC 3 cut(s) 376, 485, 534
Bsp1286I GDGCHC 4 cut(s) 380, 489, 538, 609
Bsp13I TCCGGA 1 cut(s) 345
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 6 cut(s) 273, 336, 342, 479, 567, 678
BspACI CCGC 7 cut(s) 285, 366, 423, 427, 429, 612, 673
BspANI GGCC 6 cut(s) 36, 378, 426, 487, 536, 584
BspCNI CTCAG 1 cut(s) 147
BspEI TCCGGA 1 cut(s) 345
BspFNI CGCG 2 cut(s) 323, 429
BspLI GGNNCC 9 cut(s) 350, 378, 379, 433, 481, 487, 488, 535, 536
BspPI GGATC 5 cut(s) 337, 344, 474, 487, 673
BspQI GCTCTTC 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 350
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 1 cut(s) 535
BssECI CCNNGG 5 cut(s) 31, 360, 379, 427, 493
BssMI GATC 6 cut(s) 273, 336, 342, 479, 567, 678
BssNI GRCGYC 1 cut(s) 661
Bst2UI CCWGG 2 cut(s) 32, 361
Bst4CI ACNGT 3 cut(s) 253, 629, 647
Bst6I CTCTTC 3 cut(s) 188, 212, 566
BstACI GRCGYC 1 cut(s) 661
BstAUI TGTACA 1 cut(s) 246
BstBAI YACGTR 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 582
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 2 cut(s) 427, 493
BstEII GGTNACC 1 cut(s) 520
BstF5I GGATG 3 cut(s) 11, 164, 643
BstFNI CGCG 2 cut(s) 323, 429
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 6 cut(s) 276, 339, 345, 482, 570, 681
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 6 cut(s) 273, 336, 342, 479, 567, 678
BstMCI CGRYCG 2 cut(s) 427, 570
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstNI CCWGG 2 cut(s) 32, 361
BstPI GGTNACC 1 cut(s) 520
BstSCI CCNGG 6 cut(s) 30, 234, 266, 359, 379, 482
BstSLI GKGCMC 3 cut(s) 380, 489, 538
BstUI CGCG 2 cut(s) 323, 429
BstV1I GCAGC 1 cut(s) 561
BstX2I RGATCY 2 cut(s) 342, 479
BstYI RGATCY 2 cut(s) 342, 479
BstZI CGGCCG 1 cut(s) 424
BsuRI GGCC 6 cut(s) 36, 378, 426, 487, 536, 584
BtgI CCRYGG 2 cut(s) 427, 493
BtsCI GGATG 3 cut(s) 11, 164, 643
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 2 cut(s) 528, 581
Cac8I GCNNGC 1 cut(s) 582
CaiI CAGNNNCTG 1 cut(s) 580
CciNI GCGGCCGC 1 cut(s) 424
CfoI GCGC 1 cut(s) 458
Cfr42I CCGCGG 1 cut(s) 430
CpoI CGGWCCG 1 cut(s) 684
CseI GACGC 2 cut(s) 329, 650
Csp6I GTAC 3 cut(s) 247, 502, 601
CspCI CAANNNNNGTGG 2 cut(s) 527, 562
CspI CGGWCCG 1 cut(s) 684
CviAII CATG 2 cut(s) 151, 676
CviQI GTAC 3 cut(s) 247, 502, 601
DdeI CTNAG 1 cut(s) 134
DpnI GATC 6 cut(s) 275, 338, 344, 481, 569, 680
DpnII GATC 6 cut(s) 273, 336, 342, 479, 567, 678
EaeI YGGCCR 2 cut(s) 424, 582
EagI CGGCCG 1 cut(s) 424
Eam1104I CTCTTC 3 cut(s) 188, 212, 566
EarI CTCTTC 3 cut(s) 188, 212, 566
Ecl136II GAGCTC 1 cut(s) 607
EclXI CGGCCG 1 cut(s) 424
Eco24I GRGCYC 4 cut(s) 380, 489, 538, 609
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 3 cut(s) 264, 431, 684
Eco52I CGGCCG 1 cut(s) 424
Eco53kI GAGCTC 1 cut(s) 607
Eco72I CACGTG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 353
Eco91I GGTNACC 1 cut(s) 520
EcoICRI GAGCTC 1 cut(s) 607
EcoO109I RGGNCCY 3 cut(s) 377, 486, 534
EcoO65I GGTNACC 1 cut(s) 520
EcoRII CCWGG 2 cut(s) 30, 359
EcoT38I GRGCYC 4 cut(s) 380, 489, 538, 609
FaeI CATG 2 cut(s) 154, 679
FaiI YATR 6 cut(s) 107, 124, 152, 327, 666, 677
FaqI GGGAC 2 cut(s) 301, 580
FatI CATG 2 cut(s) 150, 675
FauI CCCGC 2 cut(s) 278, 359
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 424, 427, 550
FokI GGATG 2 cut(s) 151, 650
FriOI GRGCYC 4 cut(s) 380, 489, 538, 609
Fsp4HI GCNGC 3 cut(s) 424, 427, 550
GlaI GCGC 1 cut(s) 457
GluI GCNGC 3 cut(s) 424, 427, 550
GsaI CCCAGC 1 cut(s) 174
HaeIII GGCC 6 cut(s) 36, 378, 426, 487, 536, 584
HapII CCGG 8 cut(s) 236, 267, 310, 346, 381, 483, 682, 687
HgaI GACGC 2 cut(s) 329, 650
HhaI GCGC 1 cut(s) 458
Hin1I GRCGYC 1 cut(s) 661
Hin1II CATG 2 cut(s) 154, 679
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 1 cut(s) 293
HpaII CCGG 8 cut(s) 236, 267, 310, 346, 381, 483, 682, 687
HphI GGTGA 6 cut(s) 58, 205, 460, 514, 601, 662
Hpy166II GTNNAC 3 cut(s) 247, 249, 256
Hpy188I TCNGA 3 cut(s) 229, 475, 637
Hpy188III TCNNGA 6 cut(s) 340, 346, 355, 397, 565, 652
Hpy8I GTNNAC 3 cut(s) 247, 249, 256
Hpy99I CGWCG 4 cut(s) 233, 323, 479, 518
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 3 cut(s) 253, 629, 647
HpyCH4IV ACGT 5 cut(s) 55, 258, 306, 513, 593
HpyCH4V TGCA 1 cut(s) 549
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 5 cut(s) 55, 258, 306, 513, 593
Hsp92I GRCGYC 1 cut(s) 661
Hsp92II CATG 2 cut(s) 154, 679
HspAI GCGC 1 cut(s) 456
Kpn2I TCCGGA 1 cut(s) 345
KspI CCGCGG 1 cut(s) 430
Kzo9I GATC 6 cut(s) 273, 336, 342, 479, 567, 678
LguI GCTCTTC 1 cut(s) 566
Lsp1109I GCAGC 1 cut(s) 561
MaeII ACGT 5 cut(s) 55, 258, 306, 513, 593
MaeIII GTNAC 3 cut(s) 383, 520, 629
MalI GATC 6 cut(s) 275, 338, 344, 481, 569, 680
MboI GATC 6 cut(s) 273, 336, 342, 479, 567, 678
MboII GAAGA 4 cut(s) 175, 178, 199, 553
MflI RGATCY 2 cut(s) 342, 479
MhlI GDGCHC 4 cut(s) 380, 489, 538, 609
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 3 cut(s) 83, 406, 622
MluI ACGCGT 1 cut(s) 321
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 3 cut(s) 252, 321, 498
Mox20I TGGCCA 1 cut(s) 584
MroI TCCGGA 1 cut(s) 345
MscI TGGCCA 1 cut(s) 584
MseI TTAA 2 cut(s) 278, 715
Msp20I TGGCCA 1 cut(s) 584
MspA1I CMGCKG 2 cut(s) 429, 614
MspI CCGG 8 cut(s) 236, 267, 310, 346, 381, 483, 682, 687
MspR9I CCNGG 6 cut(s) 32, 236, 268, 361, 381, 484
MvaI CCWGG 2 cut(s) 32, 361
MvnI CGCG 2 cut(s) 323, 429
MwoI GCNNNNNNNGC 1 cut(s) 435
NciI CCSGG 4 cut(s) 236, 268, 381, 484
NdeII GATC 6 cut(s) 273, 336, 342, 479, 567, 678
NlaIII CATG 2 cut(s) 154, 679
NlaIV GGNNCC 9 cut(s) 350, 378, 379, 433, 481, 487, 488, 535, 536
NmuCI GTSAC 2 cut(s) 383, 520
NotI GCGGCCGC 1 cut(s) 424
PaeR7I CTCGAG 1 cut(s) 353
PciSI GCTCTTC 1 cut(s) 566
PcsI WCGNNNNNNNCGW 1 cut(s) 225
Pfl23II CGTACG 1 cut(s) 600
PflFI GACNNNGTC 2 cut(s) 268, 647
PkrI GCNGC 3 cut(s) 425, 428, 551
Ple19I CGATCG 1 cut(s) 570
PleI GAGTC 1 cut(s) 287
PmaCI CACGTG 1 cut(s) 56
PmlI CACGTG 1 cut(s) 56
PpsI GAGTC 1 cut(s) 287
Ppu21I YACGTR 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 609
Psp6I CCWGG 2 cut(s) 30, 359
PspCI CACGTG 1 cut(s) 56
PspEI GGTNACC 1 cut(s) 520
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 2 cut(s) 30, 359
PspLI CGTACG 1 cut(s) 600
PspN4I GGNNCC 9 cut(s) 350, 378, 379, 433, 481, 487, 488, 535, 536
PspOMI GGGCCC 3 cut(s) 376, 485, 534
PstNI CAGNNNCTG 1 cut(s) 580
PsuI RGATCY 2 cut(s) 342, 479
PsyI GACNNNGTC 2 cut(s) 268, 647
PvuI CGATCG 1 cut(s) 570
RsaI GTAC 3 cut(s) 248, 503, 602
RsaNI GTAC 3 cut(s) 247, 502, 601
Rsr2I CGGWCCG 1 cut(s) 684
RsrII CGGWCCG 1 cut(s) 684
SacI GAGCTC 1 cut(s) 609
SacII CCGCGG 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 566
SaqAI TTAA 2 cut(s) 278, 715
SatI GCNGC 3 cut(s) 424, 427, 550
Sau3AI GATC 6 cut(s) 273, 336, 342, 479, 567, 678
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 6 cut(s) 32, 236, 268, 361, 381, 484
SduI GDGCHC 4 cut(s) 380, 489, 538, 609
Sfr274I CTCGAG 1 cut(s) 353
Sfr303I CCGCGG 1 cut(s) 430
SgrBI CCGCGG 1 cut(s) 430
SinI GGWCC 3 cut(s) 264, 431, 684
SlaI CTCGAG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 3 cut(s) 83, 406, 622
SsiI CCGC 7 cut(s) 285, 366, 423, 427, 429, 612, 673
SstI GAGCTC 1 cut(s) 609
StyD4I CCNGG 6 cut(s) 30, 234, 266, 359, 379, 482
TaaI ACNGT 3 cut(s) 253, 629, 647
TaiI ACGT 5 cut(s) 58, 261, 309, 516, 596
TaqI TCGA 8 cut(s) 27, 272, 339, 354, 396, 516, 570, 692
TasI AATT 3 cut(s) 83, 406, 622
TatI WGTACW 1 cut(s) 246
TauI GCSGC 2 cut(s) 426, 429
Tru1I TTAA 2 cut(s) 278, 715
Tru9I TTAA 2 cut(s) 278, 715
TscAI CASTG 2 cut(s) 535, 581
TseFI GTSAC 2 cut(s) 383, 520
TseI GCWGC 1 cut(s) 549
Tsp45I GTSAC 2 cut(s) 383, 520
TspGWI ACGGA 2 cut(s) 305, 492
TspRI CASTG 2 cut(s) 535, 581
Tth111I GACNNNGTC 2 cut(s) 268, 647
VpaK11BI GGWCC 3 cut(s) 264, 431, 684
XhoI CTCGAG 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.