Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011024

Physical Location & Seq

Genomic Coordinates Forward (+)

10237470 .. 10238730

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1027400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTTATGTTCTACCATAAAAGGCTCCTTATACCACTCGCGGCTCGCCCAACCAAGTTTACCCTTCTTCGCAAAAATGGCATCCACCAACTCCGTCAACGGTCTCTTCATCTCCTTCCTCCTCTCCCTCTTCCTCACCCTCGCCTTCTCCGACGACCCGGATTGCGTGTACACGGCGTACGTTAGGACGGGGTCGATCATAAAGGCTGGGACGGACTCCACCGTCAACCTCCGGCTGTACGACGCGTACGGATACGGCATCGAGATCAGGAACCTCGAAGCCTGGGGTGGCTTGATGGGCCCCGGCTACAACTACTTCGAGAGGGGCAATCTCGACATCTTCAGCGGGCGAGGTCCCTGCCTCCGGTCATCGATCTGCGCTCTCAACCTCACCTCGGACGGCTCCGGCCCCAACCACGGCTGGTACGTTAACTACGTCGAGGTGACCTCCACTGGGGCCCATGTTCCTTGCAATCAACAGCTATTCACCATCGAGCAGTGGCTCGCCACGGATACGTCGCCCTACGAGCTAACCGCCGTCAGGAACTACTGTAATTCCGACATCGAGGGTGCTGAGAAACGGGGACGTACTGAGCACCGGATGATCCGGTCCGGTTCGATCGGTTTGGTTTCTACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001965 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009651 GO:0010035 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0055035 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAT

Protein Analysis

214

Amino Acids

23.39

Weight (kDa)

6.06

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATS3	PF06232	50 - 153	8e-08	Embryo-specific protein 3, (ATS3)
PLAT	PF01477	57 - 176	3.2e-08	PLAT/LH2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22170 AT4G39730
fragaria_vesca	FvH4_1g21150 FvH4_1g21150
malus_domestica	MD01G1027400.v1.1 MD15G1326500.v1.1
prunus_persica	Prupe.6G182600_v2.0.a1
pyrus_communis	pycom01g05540 pycom15g28790
rosa_chinensis	RchiOBHm_Chr2g0114931
rosa_laevigata	RLG00000018136
rosa_multiflora	Rmu_sc0002764.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130460
rosa_rugosa	Rorug02G0191900
rosa_samantha	Rh2AG250700 Rh2BG260100 Rh2CG254900 Rh2DG258800
rosa_wichuraiana	Rw2G019550 Rw2G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AccII	CGCG	2 cut(s)	40, 245
AciI	CCGC	3 cut(s)	40, 345, 534
AclWI	GGATC	1 cut(s)	598
AcuI	CTGAAG	1 cut(s)	325
AfaI	GTAC	6 cut(s)	170, 179, 239, 248, 425, 589
AfiI	CCNNNNNNNGG	5 cut(s)	363, 394, 416, 453, 540
AflIII	ACRYGT	1 cut(s)	243
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	2 cut(s)	481, 529
AluI	AGCT	2 cut(s)	481, 529
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	598
AoxI	GGCC	3 cut(s)	298, 406, 456
ApaI	GGGCCC	2 cut(s)	302, 460
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	7 cut(s)	298, 299, 353, 407, 456, 457, 609
AsuC2I	CCSGG	2 cut(s)	158, 303
AsuHPI	GGTGA	4 cut(s)	127, 382, 454, 478
AvaII	GGWCC	2 cut(s)	353, 609
BaeGI	GKGCMC	2 cut(s)	302, 460
BanII	GRGCYC	2 cut(s)	302, 460
Bbv12I	GWGCWC	1 cut(s)	597
BccI	CCATC	2 cut(s)	289, 497
BceAI	ACGGC	5 cut(s)	189, 271, 415, 433, 521
BcgI	CGANNNNNNTGC	2 cut(s)	339, 373
BciT130I	CCWGG	1 cut(s)	283
BciVI	GTATCC	2 cut(s)	245, 505
BcnI	CCSGG	2 cut(s)	158, 303
BcoDI	GTCTC	1 cut(s)	107
BfuI	GTATCC	2 cut(s)	245, 505
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	3 cut(s)	158, 283, 303
Bme18I	GGWCC	2 cut(s)	353, 609
BmgT120I	GGNCC	7 cut(s)	298, 299, 353, 407, 456, 457, 609
BmiI	GGNNCC	9 cut(s)	25, 272, 300, 301, 355, 403, 409, 457, 458
BmrFI	CCNGG	3 cut(s)	158, 283, 303
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	2 cut(s)	89, 267
BmuI	ACTGGG	1 cut(s)	462
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpuMI	CCSGG	2 cut(s)	158, 303
Bsa29I	ATCGAT	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	5 cut(s)	282, 301, 393, 415, 507
BsaWI	WCCGGW	4 cut(s)	363, 597, 606, 611
Bsc4I	CCNNNNNNNGG	5 cut(s)	363, 394, 416, 453, 540
Bse1I	ACTGG	1 cut(s)	457
BseBI	CCWGG	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	371
BseDI	CCNNGG	5 cut(s)	282, 301, 393, 415, 507
BseGI	GGATG	2 cut(s)	80, 606
BseLI	CCNNNNNNNGG	5 cut(s)	363, 394, 416, 453, 540
BseMII	CTCAG	2 cut(s)	564, 582
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	2 cut(s)	302, 460
BseYI	CCCAGC	1 cut(s)	206
Bsh1236I	CGCG	2 cut(s)	40, 245
Bsh1285I	CGRYCG	1 cut(s)	621
BshFI	GGCC	3 cut(s)	300, 408, 458
BshVI	ATCGAT	1 cut(s)	371
BsiEI	CGRYCG	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	597
BsiSI	CCGG	8 cut(s)	158, 232, 303, 364, 405, 598, 607, 612
BsiWI	CGTACG	2 cut(s)	177, 246
BslFI	GGGAC	3 cut(s)	223, 339, 597
BslI	CCNNNNNNNGG	5 cut(s)	363, 394, 416, 453, 540
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	3 cut(s)	223, 339, 597
BsnI	GGCC	3 cut(s)	300, 408, 458
Bso31I	GGTCTC	1 cut(s)	107
Bsp120I	GGGCCC	2 cut(s)	298, 456
Bsp1286I	GDGCHC	3 cut(s)	302, 460, 597
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	195, 264, 372, 603, 618
BspACI	CCGC	3 cut(s)	40, 345, 534
BspANI	GGCC	3 cut(s)	300, 408, 458
BspCNI	CTCAG	2 cut(s)	565, 583
BspDI	ATCGAT	1 cut(s)	371
BspFNI	CGCG	2 cut(s)	40, 245
BspLI	GGNNCC	9 cut(s)	25, 272, 300, 301, 355, 403, 409, 457, 458
BspPI	GGATC	1 cut(s)	598
BspTNI	GGTCTC	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	5 cut(s)	282, 301, 393, 415, 507
BssMI	GATC	5 cut(s)	195, 264, 372, 603, 618
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	4 cut(s)	101, 223, 551, 637
Bst6I	CTCTTC	2 cut(s)	110, 134
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	45, 347, 504
BstDEI	CTNAG	2 cut(s)	573, 591
BstDSI	CCRYGG	2 cut(s)	415, 507
BstEII	GGTNACC	1 cut(s)	442
BstF5I	GGATG	2 cut(s)	80, 606
BstFNI	CGCG	2 cut(s)	40, 245
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	5 cut(s)	198, 267, 375, 606, 621
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	5 cut(s)	195, 264, 372, 603, 618
BstMCI	CGRYCG	1 cut(s)	621
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 297, 526
BstNI	CCWGG	1 cut(s)	283
BstPI	GGTNACC	1 cut(s)	442
BstSCI	CCNGG	3 cut(s)	156, 281, 301
BstSLI	GKGCMC	2 cut(s)	302, 460
BstUI	CGCG	2 cut(s)	40, 245
Bsu15I	ATCGAT	1 cut(s)	371
BsuI	GTATCC	2 cut(s)	245, 505
BsuRI	GGCC	3 cut(s)	300, 408, 458
BsuTUI	ATCGAT	1 cut(s)	371
BtgI	CCRYGG	2 cut(s)	415, 507
BtsCI	GGATG	2 cut(s)	80, 606
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	2 cut(s)	450, 503
Cac8I	GCNNGC	3 cut(s)	45, 347, 504
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	7 cut(s)	298, 299, 353, 407, 456, 457, 609
ClaI	ATCGAT	1 cut(s)	371
CpoI	CGGWCCG	1 cut(s)	609
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	6 cut(s)	169, 178, 238, 247, 424, 588
CspI	CGGWCCG	1 cut(s)	609
CviAII	CATG	1 cut(s)	461
CviQI	GTAC	6 cut(s)	169, 178, 238, 247, 424, 588
DdeI	CTNAG	2 cut(s)	573, 591
DpnI	GATC	5 cut(s)	197, 266, 374, 605, 620
DpnII	GATC	5 cut(s)	195, 264, 372, 603, 618
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	110, 134
EarI	CTCTTC	2 cut(s)	110, 134
Eco24I	GRGCYC	2 cut(s)	302, 460
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	353, 609
Eco57I	CTGAAG	1 cut(s)	325
Eco91I	GGTNACC	1 cut(s)	442
EcoO109I	RGGNCCY	3 cut(s)	299, 353, 456
EcoO65I	GGTNACC	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	281
EcoT38I	GRGCYC	2 cut(s)	302, 460
FaeI	CATG	1 cut(s)	464
FaiI	YATR	5 cut(s)	7, 17, 31, 200, 462
FaqI	GGGAC	3 cut(s)	223, 339, 597
FatI	CATG	1 cut(s)	460
FauI	CCCGC	1 cut(s)	338
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	2 cut(s)	67, 613
FriOI	GRGCYC	2 cut(s)	302, 460
Fsp4HI	GCNGC	1 cut(s)	41
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	300, 408, 458
HapII	CCGG	8 cut(s)	158, 232, 303, 364, 405, 598, 607, 612
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	1 cut(s)	464
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HincII	GTYRAC	3 cut(s)	97, 226, 430
HindII	GTYRAC	3 cut(s)	97, 226, 430
HinfI	GANTC	1 cut(s)	215
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	8 cut(s)	158, 232, 303, 364, 405, 598, 607, 612
HphI	GGTGA	4 cut(s)	127, 382, 454, 478
Hpy166II	GTNNAC	6 cut(s)	59, 97, 169, 171, 226, 430
Hpy188I	TCNGA	3 cut(s)	151, 397, 559
Hpy188III	TCNNGA	5 cut(s)	262, 268, 319, 332, 541
Hpy8I	GTNNAC	6 cut(s)	59, 97, 169, 171, 226, 430
Hpy99I	CGWCG	4 cut(s)	155, 245, 440, 520
HpyAV	CCTTC	3 cut(s)	73, 124, 154
HpyCH4III	ACNGT	4 cut(s)	101, 223, 551, 637
HpyCH4IV	ACGT	5 cut(s)	180, 426, 435, 515, 586
HpyCH4V	TGCA	1 cut(s)	471
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 297, 526
HpyF3I	CTNAG	2 cut(s)	573, 591
HpySE526I	ACGT	5 cut(s)	180, 426, 435, 515, 586
Hsp92II	CATG	1 cut(s)	464
HspAI	GCGC	1 cut(s)	378
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	195, 264, 372, 603, 618
LmnI	GCTCC	2 cut(s)	29, 407
LweI	GCATC	2 cut(s)	89, 267
MaeII	ACGT	5 cut(s)	180, 426, 435, 515, 586
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	5 cut(s)	197, 266, 374, 605, 620
MboI	GATC	5 cut(s)	195, 264, 372, 603, 618
MboII	GAAGA	4 cut(s)	58, 97, 121, 331
MhlI	GDGCHC	3 cut(s)	302, 460, 597
MluCI	AATT	1 cut(s)	553
MluI	ACGCGT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	174, 582
MseI	TTAA	2 cut(s)	429, 640
MspA1I	CMGCKG	1 cut(s)	345
MspI	CCGG	8 cut(s)	158, 232, 303, 364, 405, 598, 607, 612
MspR9I	CCNGG	3 cut(s)	158, 283, 303
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	2 cut(s)	40, 245
MwoI	GCNNNNNNNGC	3 cut(s)	77, 297, 526
NciI	CCSGG	2 cut(s)	158, 303
NdeII	GATC	5 cut(s)	195, 264, 372, 603, 618
NlaIII	CATG	1 cut(s)	464
NlaIV	GGNNCC	9 cut(s)	25, 272, 300, 301, 355, 403, 409, 457, 458
NmuCI	GTSAC	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	3 cut(s)	147, 423, 432
Pfl23II	CGTACG	2 cut(s)	177, 246
PflFI	GACNNNGTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	42
Ple19I	CGATCG	1 cut(s)	621
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	281
PspEI	GGTNACC	1 cut(s)	442
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	281
PspLI	CGTACG	2 cut(s)	177, 246
PspN4I	GGNNCC	9 cut(s)	25, 272, 300, 301, 355, 403, 409, 457, 458
PspOMI	GGGCCC	2 cut(s)	298, 456
PspPI	GGNCC	7 cut(s)	298, 299, 353, 407, 456, 457, 609
PspPPI	RGGWCCY	1 cut(s)	353
PsyI	GACNNNGTC	1 cut(s)	190
PvuI	CGATCG	1 cut(s)	621
RsaI	GTAC	6 cut(s)	170, 179, 239, 248, 425, 589
RsaNI	GTAC	6 cut(s)	169, 178, 238, 247, 424, 588
Rsr2I	CGGWCCG	1 cut(s)	609
RsrII	CGGWCCG	1 cut(s)	609
SaqAI	TTAA	2 cut(s)	429, 640
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	5 cut(s)	195, 264, 372, 603, 618
Sau96I	GGNCC	7 cut(s)	298, 299, 353, 407, 456, 457, 609
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	3 cut(s)	158, 283, 303
SduI	GDGCHC	3 cut(s)	302, 460, 597
SfaNI	GCATC	2 cut(s)	89, 267
SinI	GGWCC	2 cut(s)	353, 609
Sse9I	AATT	1 cut(s)	553
SsiI	CCGC	3 cut(s)	40, 345, 534
StyD4I	CCNGG	3 cut(s)	156, 281, 301
TaaI	ACNGT	4 cut(s)	101, 223, 551, 637
TaiI	ACGT	5 cut(s)	183, 429, 438, 518, 589
TasI	AATT	1 cut(s)	553
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	43
Tru1I	TTAA	2 cut(s)	429, 640
Tru9I	TTAA	2 cut(s)	429, 640
TscAI	CASTG	2 cut(s)	457, 503
TseFI	GTSAC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	1 cut(s)	97
TspGWI	ACGGA	4 cut(s)	82, 227, 264, 524
TspRI	CASTG	2 cut(s)	457, 503
Tth111I	GACNNNGTC	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	353, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.