Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011024

Physical Location & Seq

Genomic Coordinates Forward (+)

18432659 .. 18433753

Gene Structure 1095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTCGTCGCGATGTTCTCCTCCCTTTCCTCCTCCTTCTCGCCACCGTCTCCGCCGTAGCTTTCGCCGAAGATGATCCAGACTGTGTATACACATTCTACCTCAGAACCGGATCGATCTGGAAAGCCGGAACCGATTCGATCATCAGCGCAAGAATCTACGATAAGGACGGTGACTACATCGGAATCAAAAACCTTCAAGCTTGGGCTGGATTAATGGGACCTGATTACAATTACTTCGAGAGGGGTAATCTCGACATTTTCAGTGGAAGAGCACCGTGTTTACCTAGTCCGATCTGTGCCTTAAACCTAACCTCCGATGGCTCCGGCGATCACCATGGTTGGTACGTTAATTACGTTGAGATCACGACGGCTGGTGTTCACGCACAGTGCTCGACGCAGGATTTTGAGATTGAGCAATGGCTCGCTACTGATACTTCTCCTTATGAGCTCACCGCCGTACGGAACAATTGTCCGGTCAAGCTTAGGGATAGTGTTAGTCGGGTCGGGTCTGAGATTCGGAAAAAGCTTTCTTGGGTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0010035 GO:0012505 GO:0016020 GO:0031090 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAT

Protein Analysis

181

Amino Acids

20.14

Weight (kDa)

4.97

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATS3	PF06232	23 - 129	5.2e-06	Embryo-specific protein 3, (ATS3)
PLAT	PF01477	31 - 150	1.1e-14	PLAT/LH2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22170 AT4G39730
fragaria_vesca	FvH4_1g21150 FvH4_1g21150
malus_domestica	MD01G1027400.v1.1 MD15G1326500.v1.1
prunus_persica	Prupe.6G182600_v2.0.a1
pyrus_communis	pycom01g05540 pycom15g28790
rosa_chinensis	RchiOBHm_Chr2g0114931
rosa_laevigata	RLG00000018136
rosa_multiflora	Rmu_sc0002764.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130460
rosa_rugosa	Rorug02G0191900
rosa_samantha	Rh2AG250700 Rh2BG260100 Rh2CG254900 Rh2DG258800
rosa_wichuraiana	Rw2G019550 Rw2G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	12
AciI	CCGC	2 cut(s)	54, 456
AclWI	GGATC	2 cut(s)	71, 121
AfaI	GTAC	2 cut(s)	347, 462
AfiI	CCNNNNNNNGG	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	5 cut(s)	62, 203, 451, 484, 529
AluI	AGCT	5 cut(s)	62, 203, 451, 484, 529
Alw21I	GWGCWC	3 cut(s)	277, 395, 453
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	2 cut(s)	71, 121
AseI	ATTAAT	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	185, 326, 445
AvaII	GGWCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	453
Bbv12I	GWGCWC	3 cut(s)	277, 395, 453
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	3 cut(s)	41, 387, 443
BcgI	CGANNNNNNTGC	2 cut(s)	375, 409
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	3 cut(s)	133, 222, 325
Bpu10I	CCTNAGC	1 cut(s)	485
Bsa29I	ATCGAT	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	337
BsaWI	WCCGGW	2 cut(s)	110, 475
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse3DI	GCAATG	1 cut(s)	425
BseCI	ATCGAT	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMI	GCAATG	1 cut(s)	425
BseMII	CTCAG	2 cut(s)	118, 504
BseRI	GAGGAG	2 cut(s)	11, 23
Bsh1236I	CGCG	1 cut(s)	12
BshVI	ATCGAT	1 cut(s)	116
BsiHKAI	GWGCWC	3 cut(s)	277, 395, 453
BsiSI	CCGG	4 cut(s)	111, 129, 327, 476
BsiWI	CGTACG	1 cut(s)	460
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	55
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	234
Bsp1286I	GDGCHC	3 cut(s)	277, 395, 453
Bsp143I	GATC	7 cut(s)	76, 113, 117, 141, 294, 331, 363
Bsp19I	CCATGG	1 cut(s)	337
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	2 cut(s)	54, 456
BspCNI	CTCAG	2 cut(s)	117, 505
BspDI	ATCGAT	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	3 cut(s)	133, 222, 325
BspPI	GGATC	2 cut(s)	71, 121
BspQI	GCTCTTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	7 cut(s)	76, 113, 117, 141, 294, 331, 363
BssNAI	GTATAC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	337
Bst1107I	GTATAC	1 cut(s)	91
Bst4CI	ACNGT	5 cut(s)	49, 86, 173, 279, 390
Bst6I	CTCTTC	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	3 cut(s)	104, 485, 513
BstDSI	CCRYGG	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	7 cut(s)	79, 116, 120, 144, 297, 334, 366
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	7 cut(s)	76, 113, 117, 141, 294, 331, 363
BstUI	CGCG	1 cut(s)	12
BstZ17I	GTATAC	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	116
BsuTUI	ATCGAT	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	337
BtgZI	GCGATG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	271, 395
BtuMI	TCGCGA	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	426
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	221
ClaI	ATCGAT	1 cut(s)	116
CseI	GACGC	1 cut(s)	406
Csp6I	GTAC	2 cut(s)	346, 461
CviAII	CATG	1 cut(s)	338
CviQI	GTAC	2 cut(s)	346, 461
DdeI	CTNAG	3 cut(s)	104, 485, 513
DpnI	GATC	7 cut(s)	78, 115, 119, 143, 296, 333, 365
DpnII	GATC	7 cut(s)	76, 113, 117, 141, 294, 331, 363
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	451
EcoICRI	GAGCTC	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	1 cut(s)	341
FaiI	YATR	3 cut(s)	91, 339, 447
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	453
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	151
HapII	CCGG	4 cut(s)	111, 129, 327, 476
HgaI	GACGC	1 cut(s)	406
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	341
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HindIII	AAGCTT	3 cut(s)	201, 482, 527
HinfI	GANTC	4 cut(s)	137, 156, 186, 517
HpaII	CCGG	4 cut(s)	111, 129, 327, 476
HphI	GGTGA	3 cut(s)	185, 326, 445
Hpy166II	GTNNAC	3 cut(s)	91, 284, 382
Hpy188I	TCNGA	6 cut(s)	107, 185, 294, 319, 514, 522
Hpy188III	TCNNGA	6 cut(s)	11, 80, 121, 241, 254, 367
Hpy8I	GTNNAC	3 cut(s)	91, 284, 382
Hpy99I	CGWCG	3 cut(s)	12, 373, 400
HpyAV	CCTTC	2 cut(s)	47, 206
HpyCH4III	ACNGT	5 cut(s)	49, 86, 173, 279, 390
HpyCH4IV	ACGT	2 cut(s)	348, 357
HpyF3I	CTNAG	3 cut(s)	104, 485, 513
HpySE526I	ACGT	2 cut(s)	348, 357
Hsp92II	CATG	1 cut(s)	341
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	7 cut(s)	76, 113, 117, 141, 294, 331, 363
LguI	GCTCTTC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	329
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	2 cut(s)	348, 357
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	7 cut(s)	78, 115, 119, 143, 296, 333, 365
MboI	GATC	7 cut(s)	76, 113, 117, 141, 294, 331, 363
MboII	GAAGA	2 cut(s)	83, 282
MfeI	CAATTG	1 cut(s)	469
MhlI	GDGCHC	3 cut(s)	277, 395, 453
MluCI	AATT	3 cut(s)	232, 352, 469
MnlI	CCTC	6 cut(s)	32, 41, 44, 113, 237, 325
MroXI	GAANNNNTTC	1 cut(s)	136
MseI	TTAA	4 cut(s)	215, 305, 351, 544
MspI	CCGG	4 cut(s)	111, 129, 327, 476
MunI	CAATTG	1 cut(s)	469
MvnI	CGCG	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	7 cut(s)	76, 113, 117, 141, 294, 331, 363
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	3 cut(s)	133, 222, 325
NmuCI	GTSAC	1 cut(s)	173
NruI	TCGCGA	1 cut(s)	12
PciSI	GCTCTTC	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PdmI	GAANNNNTTC	1 cut(s)	136
PfeI	GAWTC	4 cut(s)	137, 156, 186, 517
Pfl23II	CGTACG	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	221
PshBI	ATTAAT	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	453
Psp5II	RGGWCCY	1 cut(s)	221
PspLI	CGTACG	1 cut(s)	460
PspN4I	GGNNCC	3 cut(s)	133, 222, 325
PspPI	GGNCC	1 cut(s)	221
PspPPI	RGGWCCY	1 cut(s)	221
RruI	TCGCGA	1 cut(s)	12
RsaI	GTAC	2 cut(s)	347, 462
RsaNI	GTAC	2 cut(s)	346, 461
SacI	GAGCTC	1 cut(s)	453
SapI	GCTCTTC	1 cut(s)	265
SaqAI	TTAA	4 cut(s)	215, 305, 351, 544
Sau3AI	GATC	7 cut(s)	76, 113, 117, 141, 294, 331, 363
Sau96I	GGNCC	1 cut(s)	221
SduI	GDGCHC	3 cut(s)	277, 395, 453
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	3 cut(s)	232, 352, 469
SsiI	CCGC	2 cut(s)	54, 456
SspMI	CTAG	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	453
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	5 cut(s)	49, 86, 173, 279, 390
TaiI	ACGT	2 cut(s)	351, 360
TaqI	TCGA	5 cut(s)	116, 140, 240, 255, 395
TasI	AATT	3 cut(s)	232, 352, 469
TfiI	GAWTC	4 cut(s)	137, 156, 186, 517
Tru1I	TTAA	4 cut(s)	215, 305, 351, 544
Tru9I	TTAA	4 cut(s)	215, 305, 351, 544
TscAI	CASTG	2 cut(s)	271, 395
TseFI	GTSAC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	2 cut(s)	271, 395
VpaK11BI	GGWCC	1 cut(s)	221
VspI	ATTAAT	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	136
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.