Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0011024

Physical Location & Seq

Genomic Coordinates Forward (+)

5358950 .. 5359615

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCATCCACCAACTCCGTCAACAGTCTCTTCATCTCCCTCCTCCTCTCCCTCTTCCTCACCCTCGCCTTCTCCGATGACCCGGATTGCGTGTACACGGCGTACGTTAGGACGGGGTCGATCATAAAGGCCGGGACGGACTCCACCGTCAACCTCCGGCTGTACGACGCGTACGGATACGGTATCGAGATCAGGAACCTCGAAGCCTGGGGCGGCTTGATGGGCCCCGGCTACAACTACTTCGAGAGGGGCAATCTCGACATCTTCAGCGGGCGAGGTCCCTGCCTCCGGTCATCGATCTGCGCTCTCAACCTCACCTCGGACGGCTCCGGCCCCAACCACGGCTGGTACGTTAACTACGTCGAGGTGACCTCCACTGGGGCCCACATTCCTTGCCATCAACAGCTGTTCACCATCGAGCAGTGGCTGGCCACCGATACGTCGCCCTACGAGCTAACCGCCGTCAGGAACTACTGTAACTCCGACATCGAGGGTGCTGAGAAAAGGGGACGTGCTGAGCACCGGATGATCCGGTCCGGTTCGAGCGGTTCGGTTTCTACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001965 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009651 GO:0010035 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0055035 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAT

Protein Analysis

189

Amino Acids

20.56

Weight (kDa)

5.28

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATS3	PF06232	25 - 128	6e-08	Embryo-specific protein 3, (ATS3)
PLAT	PF01477	32 - 151	4.1e-08	PLAT/LH2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22170 AT4G39730
fragaria_vesca	FvH4_1g21150 FvH4_1g21150
malus_domestica	MD01G1027400.v1.1 MD15G1326500.v1.1
prunus_persica	Prupe.6G182600_v2.0.a1
pyrus_communis	pycom01g05540 pycom15g28790
rosa_chinensis	RchiOBHm_Chr2g0114931
rosa_laevigata	RLG00000018136
rosa_multiflora	Rmu_sc0002764.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130460
rosa_rugosa	Rorug02G0191900
rosa_samantha	Rh2AG250700 Rh2BG260100 Rh2CG254900 Rh2DG258800
rosa_wichuraiana	Rw2G019550 Rw2G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccBSI	CCGCTC	1 cut(s)	546
AccII	CGCG	1 cut(s)	170
AciI	CCGC	4 cut(s)	213, 270, 459, 546
AclWI	GGATC	1 cut(s)	523
AcoI	YGGCCR	1 cut(s)	429
AcuI	CTGAAG	1 cut(s)	250
AfaI	GTAC	5 cut(s)	95, 104, 164, 173, 350
AfiI	CCNNNNNNNGG	5 cut(s)	288, 319, 341, 378, 465
AflIII	ACRYGT	1 cut(s)	168
AjiI	CACGTC	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	2 cut(s)	406, 454
AluI	AGCT	2 cut(s)	406, 454
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	523
AlwNI	CAGNNNCTG	1 cut(s)	427
AoxI	GGCC	5 cut(s)	129, 223, 331, 381, 429
ApaI	GGGCCC	2 cut(s)	227, 385
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	7 cut(s)	223, 224, 278, 332, 381, 382, 534
AsuC2I	CCSGG	3 cut(s)	83, 133, 228
AsuHPI	GGTGA	4 cut(s)	52, 307, 379, 403
AvaII	GGWCC	2 cut(s)	278, 534
BaeGI	GKGCMC	2 cut(s)	227, 385
BalI	TGGCCA	1 cut(s)	431
BanII	GRGCYC	2 cut(s)	227, 385
Bbv12I	GWGCWC	1 cut(s)	522
BccI	CCATC	3 cut(s)	214, 405, 422
BceAI	ACGGC	4 cut(s)	114, 340, 358, 446
BcgI	CGANNNNNNTGC	2 cut(s)	264, 298
BciT130I	CCWGG	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	170
BcnI	CCSGG	3 cut(s)	83, 133, 228
BcoDI	GTCTC	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	214
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	215
Bme1390I	CCNGG	4 cut(s)	83, 133, 208, 228
Bme18I	GGWCC	2 cut(s)	278, 534
BmgBI	CACGTC	1 cut(s)	512
BmgT120I	GGNCC	7 cut(s)	223, 224, 278, 332, 381, 382, 534
BmiI	GGNNCC	8 cut(s)	197, 225, 226, 280, 328, 334, 382, 383
BmrFI	CCNGG	4 cut(s)	83, 133, 208, 228
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	387
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuMI	CCSGG	3 cut(s)	83, 133, 228
Bsa29I	ATCGAT	1 cut(s)	296
BsaJI	CCNNGG	4 cut(s)	207, 226, 318, 340
BsaWI	WCCGGW	4 cut(s)	288, 522, 531, 536
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	5 cut(s)	288, 319, 341, 378, 465
Bse1I	ACTGG	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	208
BseCI	ATCGAT	1 cut(s)	296
BseDI	CCNNGG	4 cut(s)	207, 226, 318, 340
BseGI	GGATG	2 cut(s)	5, 531
BseLI	CCNNNNNNNGG	5 cut(s)	288, 319, 341, 378, 465
BseMII	CTCAG	2 cut(s)	489, 507
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	2 cut(s)	32, 35
BseSI	GKGCMC	2 cut(s)	227, 385
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	5 cut(s)	131, 225, 333, 383, 431
BshVI	ATCGAT	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	9 cut(s)	83, 132, 157, 228, 289, 330, 523, 532, 537
BsiWI	CGTACG	2 cut(s)	102, 171
BslFI	GGGAC	3 cut(s)	148, 264, 522
BslI	CCNNNNNNNGG	5 cut(s)	288, 319, 341, 378, 465
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	3 cut(s)	148, 264, 522
BsnI	GGCC	5 cut(s)	131, 225, 333, 383, 431
Bsp120I	GGGCCC	2 cut(s)	223, 381
Bsp1286I	GDGCHC	3 cut(s)	227, 385, 522
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	4 cut(s)	120, 189, 297, 528
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	4 cut(s)	213, 270, 459, 546
BspANI	GGCC	5 cut(s)	131, 225, 333, 383, 431
BspCNI	CTCAG	2 cut(s)	490, 508
BspDI	ATCGAT	1 cut(s)	296
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	8 cut(s)	197, 225, 226, 280, 328, 334, 382, 383
BspPI	GGATC	1 cut(s)	523
BsrBI	CCGCTC	1 cut(s)	546
BsrGI	TGTACA	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	4 cut(s)	207, 226, 318, 340
BssMI	GATC	4 cut(s)	120, 189, 297, 528
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	5 cut(s)	26, 148, 182, 476, 562
Bst6I	CTCTTC	2 cut(s)	35, 59
BstAUI	TGTACA	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	272, 429
BstDEI	CTNAG	2 cut(s)	498, 516
BstDSI	CCRYGG	1 cut(s)	340
BstEII	GGTNACC	1 cut(s)	367
BstF5I	GGATG	2 cut(s)	5, 531
BstFNI	CGCG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	4 cut(s)	123, 192, 300, 531
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	4 cut(s)	120, 189, 297, 528
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 451
BstNI	CCWGG	1 cut(s)	208
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	4 cut(s)	81, 131, 206, 226
BstSLI	GKGCMC	2 cut(s)	227, 385
BstUI	CGCG	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	296
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	5 cut(s)	131, 225, 333, 383, 431
BsuTUI	ATCGAT	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	340
BtrI	CACGTC	1 cut(s)	512
BtsCI	GGATG	2 cut(s)	5, 531
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	2 cut(s)	375, 428
Cac8I	GCNNGC	2 cut(s)	272, 429
CaiI	CAGNNNCTG	1 cut(s)	427
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	7 cut(s)	223, 224, 278, 332, 381, 382, 534
ClaI	ATCGAT	1 cut(s)	296
CpoI	CGGWCCG	1 cut(s)	534
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	5 cut(s)	94, 103, 163, 172, 349
CspCI	CAANNNNNGTGG	2 cut(s)	374, 409
CspI	CGGWCCG	1 cut(s)	534
CviQI	GTAC	5 cut(s)	94, 103, 163, 172, 349
DdeI	CTNAG	2 cut(s)	498, 516
DpnI	GATC	4 cut(s)	122, 191, 299, 530
DpnII	GATC	4 cut(s)	120, 189, 297, 528
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	2 cut(s)	35, 59
EarI	CTCTTC	2 cut(s)	35, 59
Eco24I	GRGCYC	2 cut(s)	227, 385
Eco47I	GGWCC	2 cut(s)	278, 534
Eco57I	CTGAAG	1 cut(s)	250
Eco91I	GGTNACC	1 cut(s)	367
EcoO109I	RGGNCCY	3 cut(s)	224, 278, 381
EcoO65I	GGTNACC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	206
EcoT38I	GRGCYC	2 cut(s)	227, 385
FaiI	YATR	1 cut(s)	125
FaqI	GGGAC	3 cut(s)	148, 264, 522
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	1 cut(s)	538
FriOI	GRGCYC	2 cut(s)	227, 385
Fsp4HI	GCNGC	1 cut(s)	214
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	214
HaeIII	GGCC	5 cut(s)	131, 225, 333, 383, 431
HapII	CCGG	9 cut(s)	83, 132, 157, 228, 289, 330, 523, 532, 537
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	305
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	3 cut(s)	22, 151, 355
HindII	GTYRAC	3 cut(s)	22, 151, 355
HinfI	GANTC	1 cut(s)	140
HpaI	GTTAAC	1 cut(s)	355
HpaII	CCGG	9 cut(s)	83, 132, 157, 228, 289, 330, 523, 532, 537
HphI	GGTGA	4 cut(s)	52, 307, 379, 403
Hpy166II	GTNNAC	6 cut(s)	22, 94, 96, 151, 355, 411
Hpy188I	TCNGA	3 cut(s)	76, 322, 484
Hpy188III	TCNNGA	5 cut(s)	187, 193, 244, 257, 466
Hpy8I	GTNNAC	6 cut(s)	22, 94, 96, 151, 355, 411
Hpy99I	CGWCG	3 cut(s)	170, 365, 445
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	5 cut(s)	26, 148, 182, 476, 562
HpyCH4IV	ACGT	5 cut(s)	105, 351, 360, 440, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 451
HpyF3I	CTNAG	2 cut(s)	498, 516
HpySE526I	ACGT	5 cut(s)	105, 351, 360, 440, 511
HspAI	GCGC	1 cut(s)	303
KspAI	GTTAAC	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	120, 189, 297, 528
LmnI	GCTCC	1 cut(s)	332
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	5 cut(s)	105, 351, 360, 440, 511
MaeIII	GTNAC	2 cut(s)	367, 476
MalI	GATC	4 cut(s)	122, 191, 299, 530
MbiI	CCGCTC	1 cut(s)	546
MboI	GATC	4 cut(s)	120, 189, 297, 528
MboII	GAAGA	3 cut(s)	22, 46, 256
MhlI	GDGCHC	3 cut(s)	227, 385, 522
MlsI	TGGCCA	1 cut(s)	431
MluI	ACGCGT	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	507
Mox20I	TGGCCA	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	2 cut(s)	354, 565
Msp20I	TGGCCA	1 cut(s)	431
MspA1I	CMGCKG	2 cut(s)	270, 406
MspI	CCGG	9 cut(s)	83, 132, 157, 228, 289, 330, 523, 532, 537
MspR9I	CCNGG	4 cut(s)	83, 133, 208, 228
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	222, 451
NciI	CCSGG	3 cut(s)	83, 133, 228
NdeII	GATC	4 cut(s)	120, 189, 297, 528
NlaIV	GGNNCC	8 cut(s)	197, 225, 226, 280, 328, 334, 382, 383
NmuCI	GTSAC	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 348, 357
Pfl23II	CGTACG	2 cut(s)	102, 171
PflFI	GACNNNGTC	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PpuMI	RGGWCCY	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	206
PspEI	GGTNACC	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	206
PspLI	CGTACG	2 cut(s)	102, 171
PspN4I	GGNNCC	8 cut(s)	197, 225, 226, 280, 328, 334, 382, 383
PspOMI	GGGCCC	2 cut(s)	223, 381
PspPI	GGNCC	7 cut(s)	223, 224, 278, 332, 381, 382, 534
PspPPI	RGGWCCY	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	427
PsyI	GACNNNGTC	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	5 cut(s)	95, 104, 164, 173, 350
RsaNI	GTAC	5 cut(s)	94, 103, 163, 172, 349
Rsr2I	CGGWCCG	1 cut(s)	534
RsrII	CGGWCCG	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	354, 565
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	4 cut(s)	120, 189, 297, 528
Sau96I	GGNCC	7 cut(s)	223, 224, 278, 332, 381, 382, 534
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	4 cut(s)	83, 133, 208, 228
SduI	GDGCHC	3 cut(s)	227, 385, 522
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	2 cut(s)	278, 534
SsiI	CCGC	4 cut(s)	213, 270, 459, 546
StyD4I	CCNGG	4 cut(s)	81, 131, 206, 226
TaaI	ACNGT	5 cut(s)	26, 148, 182, 476, 562
TaiI	ACGT	5 cut(s)	108, 354, 363, 443, 514
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	1 cut(s)	216
Tru1I	TTAA	2 cut(s)	354, 565
Tru9I	TTAA	2 cut(s)	354, 565
TscAI	CASTG	2 cut(s)	382, 428
TseFI	GTSAC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	22
TspGWI	ACGGA	3 cut(s)	7, 152, 189
TspRI	CASTG	2 cut(s)	382, 428
Tth111I	GACNNNGTC	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	278, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.