Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011024

Physical Location & Seq

Genomic Coordinates Reverse (-)

24926522 .. 24927466

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGACTAAATCATCCCCCAAAACAGACATCAACGTGCTTCACCCTAGCAATTCGCAAATATGGCATCCAGCAACTCCGTCAACTATCTCTTCATCTCCTTCTTCCTCTCCCTCCTCCTCACCCTCGCTTTCTCCGACGACCCGGATTGTGTGTACACGGTGTACGTTCGCACGGGGTCGATCGATAAAGGGCGGGACGGACTCGAACGTCAACCTCCGCCTCTACGATGTGTACGGATACGGCATCGAGATCACGAACCTCGAGGCCTGGGGCGGCTTGATGGGTCCCGGCTACAACTACTTCGAGAGGGGCAATCTCGATATATTCAGCGGCCGAGGTCCCTGCCTCGACTCCCCGATCTGCGCTCTCAATCTCACCTCTGACGGCTCCGGCCCCCACCACGGCTGGTACGTTAACTACGTCGAGGTCACCTCCACAGGGGTCCATATTCCTTGCCATCAACAGCTGTTCACCGTCGAGCAGTGGCTCGCCACCGATACGTGGCCCTATGAGCTCACCGCCATCAGGAACTACTGTAACTCCGCCGACATCGAGGGTGCTGAGAAACGGGGTCGTACTGAGCGTCGGATGATTCCGTCCGGTTCAGGCGGTTTGGTTTCTACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001965 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009651 GO:0010035 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0055035 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAT

Protein Analysis

210

Amino Acids

22.72

Weight (kDa)

6.58

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22170 AT4G39730
fragaria_vesca	FvH4_1g21150 FvH4_1g21150
malus_domestica	MD01G1027400.v1.1 MD15G1326500.v1.1
prunus_persica	Prupe.6G182600_v2.0.a1
pyrus_communis	pycom01g05540 pycom15g28790
rosa_chinensis	RchiOBHm_Chr2g0114931
rosa_laevigata	RLG00000018136
rosa_multiflora	Rmu_sc0002764.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130460
rosa_rugosa	Rorug02G0191900
rosa_samantha	Rh2AG250700 Rh2BG260100 Rh2CG254900 Rh2DG258800
rosa_wichuraiana	Rw2G019550 Rw2G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AbsI	CCTCGAGG	1 cut(s)	260
AciI	CCGC	7 cut(s)	192, 217, 273, 330, 519, 543, 609
AcoI	YGGCCR	1 cut(s)	331
AfaI	GTAC	5 cut(s)	154, 163, 233, 410, 577
AfiI	CCNNNNNNNGG	4 cut(s)	401, 438, 501, 525
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	2 cut(s)	466, 514
AluI	AGCT	2 cut(s)	466, 514
Alw21I	GWGCWC	1 cut(s)	516
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	4 cut(s)	264, 331, 391, 503
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	5 cut(s)	284, 338, 392, 442, 504
AsuC2I	CCSGG	2 cut(s)	142, 288
AsuHPI	GGTGA	6 cut(s)	32, 111, 367, 421, 463, 508
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	3 cut(s)	284, 338, 442
BanII	GRGCYC	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	516
BccI	CCATC	3 cut(s)	274, 465, 530
BceAI	ACGGC	3 cut(s)	256, 400, 418
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BciT130I	CCWGG	1 cut(s)	268
BciVI	GTATCC	1 cut(s)	230
BcnI	CCSGG	2 cut(s)	142, 288
BfaI	CTAG	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	2 cut(s)	274, 331
BlsI	GCNGC	2 cut(s)	275, 332
Bme1390I	CCNGG	3 cut(s)	142, 268, 288
Bme18I	GGWCC	3 cut(s)	284, 338, 442
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	5 cut(s)	284, 338, 392, 442, 504
BmiI	GGNNCC	6 cut(s)	285, 286, 340, 388, 394, 443
BmrFI	CCNGG	3 cut(s)	142, 268, 288
BmsI	GCATC	2 cut(s)	73, 252
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
BpuMI	CCSGG	2 cut(s)	142, 288
Bsa29I	ATCGAT	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	267, 334, 400
BsaWI	WCCGGW	1 cut(s)	599
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	4 cut(s)	401, 438, 501, 525
BseBI	CCWGG	1 cut(s)	268
BseCI	ATCGAT	1 cut(s)	182
BseDI	CCNNGG	3 cut(s)	267, 334, 400
BseGI	GGATG	3 cut(s)	11, 64, 594
BseLI	CCNNNNNNNGG	4 cut(s)	401, 438, 501, 525
BseMII	CTCAG	2 cut(s)	552, 570
BseRI	GAGGAG	2 cut(s)	103, 106
BseX3I	CGGCCG	1 cut(s)	331
Bsh1285I	CGRYCG	2 cut(s)	182, 334
BshFI	GGCC	4 cut(s)	266, 333, 393, 505
BshVI	ATCGAT	1 cut(s)	182
BsiEI	CGRYCG	2 cut(s)	182, 334
BsiHKAI	GWGCWC	1 cut(s)	516
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	4 cut(s)	142, 288, 390, 600
BslFI	GGGAC	3 cut(s)	208, 270, 324
BslI	CCNNNNNNNGG	4 cut(s)	401, 438, 501, 525
BsmFI	GGGAC	3 cut(s)	208, 270, 324
BsnI	GGCC	4 cut(s)	266, 333, 393, 505
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp1407I	TGTACA	1 cut(s)	152
Bsp143I	GATC	3 cut(s)	179, 249, 357
BspACI	CCGC	7 cut(s)	192, 217, 273, 330, 519, 543, 609
BspANI	GGCC	4 cut(s)	266, 333, 393, 505
BspCNI	CTCAG	2 cut(s)	553, 571
BspDI	ATCGAT	1 cut(s)	182
BspLI	GGNNCC	6 cut(s)	285, 286, 340, 388, 394, 443
BsrGI	TGTACA	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	267, 334, 400
BssMI	GATC	3 cut(s)	179, 249, 357
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	4 cut(s)	159, 475, 536, 625
Bst6I	CTCTTC	1 cut(s)	94
BstAUI	TGTACA	1 cut(s)	152
BstBAI	YACGTR	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	2 cut(s)	561, 579
BstDSI	CCRYGG	1 cut(s)	400
BstEII	GGTNACC	1 cut(s)	427
BstF5I	GGATG	3 cut(s)	11, 64, 594
BstHHI	GCGC	1 cut(s)	365
BstKTI	GATC	3 cut(s)	182, 252, 360
BstMBI	GATC	3 cut(s)	179, 249, 357
BstMCI	CGRYCG	2 cut(s)	182, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 511
BstNI	CCWGG	1 cut(s)	268
BstPI	GGTNACC	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	140, 266, 286
BstZI	CGGCCG	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	4 cut(s)	266, 333, 393, 505
BsuTUI	ATCGAT	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	3 cut(s)	11, 64, 594
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	1 cut(s)	488
Cac8I	GCNNGC	1 cut(s)	489
CfoI	GCGC	1 cut(s)	365
Cfr13I	GGNCC	5 cut(s)	284, 338, 392, 442, 504
ClaI	ATCGAT	1 cut(s)	182
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	5 cut(s)	153, 162, 232, 409, 576
CviQI	GTAC	5 cut(s)	153, 162, 232, 409, 576
DdeI	CTNAG	2 cut(s)	561, 579
DpnI	GATC	3 cut(s)	181, 251, 359
DpnII	GATC	3 cut(s)	179, 249, 357
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	331
EagI	CGGCCG	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
EciI	GGCGGA	2 cut(s)	206, 532
Ecl136II	GAGCTC	1 cut(s)	514
EclXI	CGGCCG	1 cut(s)	331
Eco147I	AGGCCT	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	516
Eco47I	GGWCC	3 cut(s)	284, 338, 442
Eco52I	CGGCCG	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	514
Eco88I	CYCGRG	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	514
EcoO109I	RGGNCCY	2 cut(s)	284, 338
EcoO65I	GGTNACC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	516
FaiI	YATR	4 cut(s)	61, 323, 447, 510
FaqI	GGGAC	3 cut(s)	208, 270, 324
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	2 cut(s)	274, 331
FokI	GGATG	2 cut(s)	51, 601
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	2 cut(s)	274, 331
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	2 cut(s)	274, 331
HaeIII	GGCC	4 cut(s)	266, 333, 393, 505
HapII	CCGG	4 cut(s)	142, 288, 390, 600
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	365
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HincII	GTYRAC	3 cut(s)	81, 211, 415
HindII	GTYRAC	3 cut(s)	81, 211, 415
HinfI	GANTC	3 cut(s)	200, 350, 592
HpaI	GTTAAC	1 cut(s)	415
HpaII	CCGG	4 cut(s)	142, 288, 390, 600
HphI	GGTGA	6 cut(s)	32, 111, 367, 421, 463, 508
Hpy166II	GTNNAC	8 cut(s)	81, 153, 155, 162, 211, 232, 415, 471
Hpy188I	TCNGA	3 cut(s)	135, 382, 588
Hpy188III	TCNNGA	5 cut(s)	247, 253, 304, 317, 526
Hpy8I	GTNNAC	8 cut(s)	81, 153, 155, 162, 211, 232, 415, 471
Hpy99I	CGWCG	4 cut(s)	139, 425, 479, 588
HpyAV	CCTTC	1 cut(s)	108
HpyCH4III	ACNGT	4 cut(s)	159, 475, 536, 625
HpyCH4IV	ACGT	6 cut(s)	33, 164, 207, 411, 420, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 511
HpyF3I	CTNAG	2 cut(s)	561, 579
HpySE526I	ACGT	6 cut(s)	33, 164, 207, 411, 420, 500
HspAI	GCGC	1 cut(s)	363
KflI	GGGWCCC	1 cut(s)	284
KspAI	GTTAAC	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	179, 249, 357
LmnI	GCTCC	1 cut(s)	392
LweI	GCATC	2 cut(s)	73, 252
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	6 cut(s)	33, 164, 207, 411, 420, 500
MaeIII	GTNAC	2 cut(s)	427, 536
MalI	GATC	3 cut(s)	181, 251, 359
MboI	GATC	3 cut(s)	179, 249, 357
MboII	GAAGA	2 cut(s)	81, 93
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	1 cut(s)	49
MlyI	GAGTC	2 cut(s)	194, 344
MmeI	TCCRAC	2 cut(s)	158, 566
MseI	TTAA	2 cut(s)	414, 628
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	2 cut(s)	330, 466
MspI	CCGG	4 cut(s)	142, 288, 390, 600
MspR9I	CCNGG	3 cut(s)	142, 268, 288
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	61, 511
NciI	CCSGG	2 cut(s)	142, 288
NdeII	GATC	3 cut(s)	179, 249, 357
NlaIV	GGNNCC	6 cut(s)	285, 286, 340, 388, 394, 443
NmeAIII	GCCGAG	1 cut(s)	359
NmuCI	GTSAC	1 cut(s)	427
PaeR7I	CTCGAG	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	4 cut(s)	131, 408, 417, 580
PfeI	GAWTC	1 cut(s)	592
PkrI	GCNGC	2 cut(s)	275, 332
Ple19I	CGATCG	1 cut(s)	182
PleI	GAGTC	2 cut(s)	194, 344
PpsI	GAGTC	2 cut(s)	194, 344
Ppu21I	YACGTR	1 cut(s)	501
PpuMI	RGGWCCY	2 cut(s)	284, 338
Psp124BI	GAGCTC	1 cut(s)	516
Psp5II	RGGWCCY	2 cut(s)	284, 338
Psp6I	CCWGG	1 cut(s)	266
PspEI	GGTNACC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	6 cut(s)	285, 286, 340, 388, 394, 443
PspPI	GGNCC	5 cut(s)	284, 338, 392, 442, 504
PspPPI	RGGWCCY	2 cut(s)	284, 338
PspXI	VCTCGAGB	1 cut(s)	260
PvuI	CGATCG	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	466
RsaI	GTAC	5 cut(s)	154, 163, 233, 410, 577
RsaNI	GTAC	5 cut(s)	153, 162, 232, 409, 576
RseI	CAYNNNNRTG	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	516
SaqAI	TTAA	2 cut(s)	414, 628
SatI	GCNGC	2 cut(s)	274, 331
Sau3AI	GATC	3 cut(s)	179, 249, 357
Sau96I	GGNCC	5 cut(s)	284, 338, 392, 442, 504
SchI	GAGTC	2 cut(s)	194, 344
ScrFI	CCNGG	3 cut(s)	142, 268, 288
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	2 cut(s)	73, 252
Sfr274I	CTCGAG	1 cut(s)	260
SinI	GGWCC	3 cut(s)	284, 338, 442
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	49
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	7 cut(s)	192, 217, 273, 330, 519, 543, 609
SspMI	CTAG	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	516
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	3 cut(s)	140, 266, 286
TaaI	ACNGT	4 cut(s)	159, 475, 536, 625
TaiI	ACGT	6 cut(s)	36, 167, 210, 414, 423, 503
TasI	AATT	1 cut(s)	49
TatI	WGTACW	1 cut(s)	152
TauI	GCSGC	2 cut(s)	276, 333
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	2 cut(s)	414, 628
Tru9I	TTAA	2 cut(s)	414, 628
TscAI	CASTG	1 cut(s)	488
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	4 cut(s)	66, 212, 249, 585
TspRI	CASTG	1 cut(s)	488
VpaK11BI	GGWCC	3 cut(s)	284, 338, 442
XhoI	CTCGAG	1 cut(s)	260
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.