Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011024

Physical Location & Seq

Genomic Coordinates Reverse (-)

66605504 .. 66606649

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGTTCAACATCAACAGTCTTCTCCTCTTCCTCTCCCTCTCCCTCTTGCTCACTCTCGCTTTCTCTGACGACCCCGATTGCGTTTACACGGTTTACGTTAGGACCGGGTCGATCATCAAGGGAGGGACGGACTCCAACGTCAATGTGAGACTCTACGACGGCTACGGCTATGGGATCGAGATCCGGAACCTCGAAGCCTGGGGAGGGTTGATGGGATCCGACTACGACTACTTCGAGAGAGGCAATCTTGACATTTTCAGCGGCCGCGGACCCTGCCTCACCGCCCCTATCTGCGCTCTCAACCTCACCTCCGACGGCGCCGGCTCCGGCCACGGCTGGTACGTCAACTACGTCGAGGTGACGTCCACCGGGGCCCATATACCTTGCCACCAGCAGCTGTTCACGATCGAGCAGTGGCTCGCCACTGATACGGCCCCGTACGAGCTCACCGCGATCAGGAACTACTGCAACAATAACGACGCCGTCGATGAGAAGATCCGGTCCGGCTCGAGTGGTTTGGTTTCATCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001965 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009651 GO:0010035 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0055035 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAT

Protein Analysis

178

Amino Acids

19.39

Weight (kDa)

4.44

Isoelectric Point (pI)

26.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATS3	PF06232	22 - 126	2e-08	Embryo-specific protein 3, (ATS3)
PLAT	PF01477	30 - 148	2.3e-08	PLAT/LH2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22170 AT4G39730
fragaria_vesca	FvH4_1g21150 FvH4_1g21150
malus_domestica	MD01G1027400.v1.1 MD15G1326500.v1.1
prunus_persica	Prupe.6G182600_v2.0.a1
pyrus_communis	pycom01g05540 pycom15g28790
rosa_chinensis	RchiOBHm_Chr2g0114931
rosa_laevigata	RLG00000018136
rosa_multiflora	Rmu_sc0002764.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130460
rosa_rugosa	Rorug02G0191900
rosa_samantha	Rh2AG250700 Rh2BG260100 Rh2CG254900 Rh2DG258800
rosa_wichuraiana	Rw2G019550 Rw2G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AatII	GACGTC	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	320
AccII	CGCG	2 cut(s)	270, 455
AccIII	TCCGGA	1 cut(s)	186
AciI	CCGC	5 cut(s)	264, 268, 270, 285, 453
AclWI	GGATC	5 cut(s)	178, 185, 213, 226, 493
AcoI	YGGCCR	2 cut(s)	265, 331
AcyI	GRCGYC	3 cut(s)	321, 365, 483
AfaI	GTAC	2 cut(s)	344, 443
AfiI	CCNNNNNNNGG	2 cut(s)	207, 459
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	2 cut(s)	400, 448
AluI	AGCT	2 cut(s)	400, 448
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	5 cut(s)	178, 185, 213, 226, 493
AlwNI	CAGNNNCTG	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	511
Aor13HI	TCCGGA	1 cut(s)	186
AoxI	GGCC	4 cut(s)	265, 331, 375, 435
ApaI	GGGCCC	1 cut(s)	379
ApeKI	GCWGC	1 cut(s)	397
AspLEI	GCGC	2 cut(s)	299, 323
AspS9I	GGNCC	6 cut(s)	105, 272, 375, 376, 436, 504
AsuC2I	CCSGG	2 cut(s)	109, 373
AsuHPI	GGTGA	4 cut(s)	274, 301, 373, 442
AvaI	CYCGRG	1 cut(s)	511
AvaII	GGWCC	3 cut(s)	105, 272, 504
BaeGI	GKGCMC	1 cut(s)	379
BamHI	GGATCC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	320
BanII	GRGCYC	2 cut(s)	379, 450
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	6 cut(s)	178, 184, 334, 352, 450, 470
BciT130I	CCWGG	1 cut(s)	202
BcnI	CCSGG	2 cut(s)	109, 373
BcoDI	GTCTC	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	324
BisI	GCNGC	3 cut(s)	265, 268, 398
BlsI	GCNGC	3 cut(s)	266, 269, 399
Bme1390I	CCNGG	3 cut(s)	109, 202, 373
Bme18I	GGWCC	3 cut(s)	105, 272, 504
BmeT110I	CYCGRG	1 cut(s)	511
BmgT120I	GGNCC	6 cut(s)	105, 272, 375, 376, 436, 504
BmiI	GGNNCC	8 cut(s)	191, 220, 274, 322, 328, 376, 377, 438
BmrFI	CCNGG	3 cut(s)	109, 202, 373
BpiI	GAAGAC	1 cut(s)	14
BpuMI	CCSGG	2 cut(s)	109, 373
BsaBI	GATNNNNATC	1 cut(s)	182
BsaHI	GRCGYC	3 cut(s)	321, 365, 483
BsaJI	CCNNGG	4 cut(s)	201, 268, 334, 372
BsaWI	WCCGGW	2 cut(s)	186, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 459
Bse118I	RCCGGY	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	182
BseAI	TCCGGA	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	4 cut(s)	201, 268, 334, 372
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	2 cut(s)	207, 459
BseRI	GAGGAG	1 cut(s)	17
BseSI	GKGCMC	1 cut(s)	379
BseX3I	CGGCCG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	409
Bsh1236I	CGCG	2 cut(s)	270, 455
Bsh1285I	CGRYCG	2 cut(s)	268, 411
BshFI	GGCC	4 cut(s)	267, 333, 377, 437
BshNI	GGYRCC	1 cut(s)	320
BsiEI	CGRYCG	2 cut(s)	268, 411
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	511
BsiSI	CCGG	7 cut(s)	108, 187, 324, 330, 372, 502, 507
BsiWI	CGTACG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	207, 459
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	4 cut(s)	267, 333, 377, 437
BsoBI	CYCGRG	1 cut(s)	511
Bsp120I	GGGCCC	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	379, 450
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	7 cut(s)	114, 177, 183, 218, 408, 456, 498
BspACI	CCGC	5 cut(s)	264, 268, 270, 285, 453
BspANI	GGCC	4 cut(s)	267, 333, 377, 437
BspEI	TCCGGA	1 cut(s)	186
BspFNI	CGCG	2 cut(s)	270, 455
BspLI	GGNNCC	8 cut(s)	191, 220, 274, 322, 328, 376, 377, 438
BspPI	GGATC	5 cut(s)	178, 185, 213, 226, 493
BspT107I	GGYRCC	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	4 cut(s)	201, 268, 334, 372
BssMI	GATC	7 cut(s)	114, 177, 183, 218, 408, 456, 498
BssNI	GRCGYC	3 cut(s)	321, 365, 483
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	2 cut(s)	20, 94
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	3 cut(s)	321, 365, 483
BstC8I	GCNNGC	2 cut(s)	325, 423
BstDSI	CCRYGG	2 cut(s)	268, 334
BstFNI	CGCG	2 cut(s)	270, 455
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	2 cut(s)	299, 323
BstKTI	GATC	7 cut(s)	117, 180, 186, 221, 411, 459, 501
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	7 cut(s)	114, 177, 183, 218, 408, 456, 498
BstMCI	CGRYCG	2 cut(s)	268, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	3 cut(s)	107, 200, 371
BstSLI	GKGCMC	1 cut(s)	379
BstUI	CGCG	2 cut(s)	270, 455
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	3 cut(s)	183, 218, 498
BstYI	RGATCY	3 cut(s)	183, 218, 498
BstZI	CGGCCG	1 cut(s)	265
BsuRI	GGCC	4 cut(s)	267, 333, 377, 437
BtgI	CCRYGG	2 cut(s)	268, 334
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	2 cut(s)	422, 426
Cac8I	GCNNGC	2 cut(s)	325, 423
CaiI	CAGNNNCTG	1 cut(s)	400
CciNI	GCGGCCGC	1 cut(s)	265
CfoI	GCGC	2 cut(s)	299, 323
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	6 cut(s)	105, 272, 375, 376, 436, 504
Cfr42I	CCGCGG	1 cut(s)	271
CpoI	CGGWCCG	1 cut(s)	504
CseI	GACGC	1 cut(s)	491
Csp6I	GTAC	2 cut(s)	343, 442
CspI	CGGWCCG	1 cut(s)	504
CviQI	GTAC	2 cut(s)	343, 442
DinI	GGCGCC	1 cut(s)	322
DpnI	GATC	7 cut(s)	116, 179, 185, 220, 410, 458, 500
DpnII	GATC	7 cut(s)	114, 177, 183, 218, 408, 456, 498
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
EaeI	YGGCCR	2 cut(s)	265, 331
EagI	CGGCCG	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	448
EclXI	CGGCCG	1 cut(s)	265
Eco24I	GRGCYC	2 cut(s)	379, 450
Eco47I	GGWCC	3 cut(s)	105, 272, 504
Eco52I	CGGCCG	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	200
EcoT38I	GRGCYC	2 cut(s)	379, 450
EgeI	GGCGCC	1 cut(s)	322
EheI	GGCGCC	1 cut(s)	322
FaiI	YATR	3 cut(s)	174, 381, 383
FaqI	GGGAC	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	265, 268, 398
FriOI	GRGCYC	2 cut(s)	379, 450
Fsp4HI	GCNGC	3 cut(s)	265, 268, 398
GlaI	GCGC	2 cut(s)	298, 322
GluI	GCNGC	3 cut(s)	265, 268, 398
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	4 cut(s)	267, 333, 377, 437
HapII	CCGG	7 cut(s)	108, 187, 324, 330, 372, 502, 507
HgaI	GACGC	1 cut(s)	491
HhaI	GCGC	2 cut(s)	299, 323
Hin1I	GRCGYC	3 cut(s)	321, 365, 483
Hin6I	GCGC	2 cut(s)	297, 321
HinP1I	GCGC	2 cut(s)	297, 321
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	2 cut(s)	134, 153
HpaII	CCGG	7 cut(s)	108, 187, 324, 330, 372, 502, 507
HphI	GGTGA	4 cut(s)	274, 301, 373, 442
Hpy166II	GTNNAC	5 cut(s)	88, 97, 349, 369, 405
Hpy188I	TCNGA	3 cut(s)	70, 223, 316
Hpy188III	TCNNGA	6 cut(s)	181, 187, 238, 251, 406, 460
Hpy8I	GTNNAC	5 cut(s)	88, 97, 349, 369, 405
Hpy99I	CGWCG	5 cut(s)	164, 320, 359, 485, 491
HpyCH4III	ACNGT	2 cut(s)	20, 94
HpyCH4IV	ACGT	5 cut(s)	99, 141, 345, 354, 365
HpyCH4V	TGCA	1 cut(s)	471
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpySE526I	ACGT	5 cut(s)	99, 141, 345, 354, 365
Hsp92I	GRCGYC	3 cut(s)	321, 365, 483
HspAI	GCGC	2 cut(s)	297, 321
KasI	GGCGCC	1 cut(s)	320
Kpn2I	TCCGGA	1 cut(s)	186
KroI	GCCGGC	1 cut(s)	323
KroNI	GCCGGC	1 cut(s)	325
KspI	CCGCGG	1 cut(s)	271
Kzo9I	GATC	7 cut(s)	114, 177, 183, 218, 408, 456, 498
LmnI	GCTCC	1 cut(s)	332
Lsp1109I	GCAGC	1 cut(s)	409
MaeII	ACGT	5 cut(s)	99, 141, 345, 354, 365
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	7 cut(s)	116, 179, 185, 220, 410, 458, 500
MboI	GATC	7 cut(s)	114, 177, 183, 218, 408, 456, 498
MboII	GAAGA	3 cut(s)	14, 22, 508
MflI	RGATCY	3 cut(s)	183, 218, 498
MhlI	GDGCHC	2 cut(s)	379, 450
Mly113I	GGCGCC	1 cut(s)	321
MlyI	GAGTC	2 cut(s)	128, 147
MmeI	TCCRAC	3 cut(s)	162, 246, 339
MroI	TCCGGA	1 cut(s)	186
MroNI	GCCGGC	1 cut(s)	323
MspA1I	CMGCKG	3 cut(s)	264, 270, 400
MspI	CCGG	7 cut(s)	108, 187, 324, 330, 372, 502, 507
MspR9I	CCNGG	3 cut(s)	109, 202, 373
MvaI	CCWGG	1 cut(s)	202
MvnI	CGCG	2 cut(s)	270, 455
MwoI	GCNNNNNNNGC	1 cut(s)	276
NaeI	GCCGGC	1 cut(s)	325
NarI	GGCGCC	1 cut(s)	321
NciI	CCSGG	2 cut(s)	109, 373
NdeII	GATC	7 cut(s)	114, 177, 183, 218, 408, 456, 498
NgoMIV	GCCGGC	1 cut(s)	323
NlaIV	GGNNCC	8 cut(s)	191, 220, 274, 322, 328, 376, 377, 438
NmuCI	GTSAC	1 cut(s)	361
NotI	GCGGCCGC	1 cut(s)	265
PaeR7I	CTCGAG	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	4 cut(s)	234, 342, 351, 486
PdiI	GCCGGC	1 cut(s)	325
Pfl23II	CGTACG	1 cut(s)	441
PflFI	GACNNNGTC	2 cut(s)	109, 485
PkrI	GCNGC	3 cut(s)	266, 269, 399
Ple19I	CGATCG	1 cut(s)	411
PleI	GAGTC	2 cut(s)	128, 147
PluTI	GGCGCC	1 cut(s)	324
PpsI	GAGTC	2 cut(s)	128, 147
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspLI	CGTACG	1 cut(s)	441
PspN4I	GGNNCC	8 cut(s)	191, 220, 274, 322, 328, 376, 377, 438
PspOMI	GGGCCC	1 cut(s)	375
PspPI	GGNCC	6 cut(s)	105, 272, 375, 376, 436, 504
PspXI	VCTCGAGB	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	400
PsuI	RGATCY	3 cut(s)	183, 218, 498
PsyI	GACNNNGTC	2 cut(s)	109, 485
PvuI	CGATCG	1 cut(s)	411
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	2 cut(s)	344, 443
RsaNI	GTAC	2 cut(s)	343, 442
Rsr2I	CGGWCCG	1 cut(s)	504
RsrII	CGGWCCG	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	450
SacII	CCGCGG	1 cut(s)	271
SatI	GCNGC	3 cut(s)	265, 268, 398
Sau3AI	GATC	7 cut(s)	114, 177, 183, 218, 408, 456, 498
Sau96I	GGNCC	6 cut(s)	105, 272, 375, 376, 436, 504
SchI	GAGTC	2 cut(s)	128, 147
ScrFI	CCNGG	3 cut(s)	109, 202, 373
SduI	GDGCHC	2 cut(s)	379, 450
SfoI	GGCGCC	1 cut(s)	322
Sfr274I	CTCGAG	1 cut(s)	511
Sfr303I	CCGCGG	1 cut(s)	271
SgrBI	CCGCGG	1 cut(s)	271
SinI	GGWCC	3 cut(s)	105, 272, 504
SlaI	CTCGAG	1 cut(s)	511
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
SsiI	CCGC	5 cut(s)	264, 268, 270, 285, 453
SspDI	GGCGCC	1 cut(s)	320
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	107, 200, 371
TaaI	ACNGT	2 cut(s)	20, 94
TaiI	ACGT	5 cut(s)	102, 144, 348, 357, 368
TaqI	TCGA	8 cut(s)	113, 180, 195, 237, 357, 411, 489, 512
TauI	GCSGC	2 cut(s)	267, 270
TscAI	CASTG	2 cut(s)	422, 433
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	516
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	422, 433
Tth111I	GACNNNGTC	2 cut(s)	109, 485
VpaK11BI	GGWCC	3 cut(s)	105, 272, 504
XhoI	CTCGAG	1 cut(s)	511
ZraI	GACGTC	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.