Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0011024

Physical Location & Seq

Genomic Coordinates Reverse (-)

25969152 .. 25970294

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G019550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGTTCAACATCAACAGACTCCTCCTCTTCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCGCTCACTCTCGCTTTCTATGACGACCCCGATTGCGTTTACACGGTTTACGTTAGGACCGGGTCGATCATCAAGGGTGGGACGGACTCCAACATCAACGTGAGACTCTACGACGGCTACGGATACGGGATCGAGATCCGGAACCTCGAAGCCTGGGGAGGGTTGATGGGATCCGACTACGACTACTTTGAGAGAGGCAATCTTGACATTTTCAGCGGCCGCGGACCCTGCCTCACCGCCCCTATCTGCGCTCTCAACCTCACCTCCGATGGCGCCGGCTCCGGCCACGGCTGGTACGTCAACTACGTCGAGGTGACGTCCACCGGGGCCCATATACCTTGCCACCAGCAGCTGTTCACGATCGAGCAGTGGCTCGCCACCGATACGGCCCCGTACGAGCTTACCGCGATCAGGAACTACTGCAACAATAACGACGCTGTCGATGAGAAGATCCGGTCCGGCTCGAGTGGTTTGGTTTCATCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001965 GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009651 GO:0010035 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0055035 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAT

Protein Analysis

182

Amino Acids

19.92

Weight (kDa)

4.55

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATS3	PF06232	28 - 130	2.8e-08	Embryo-specific protein 3, (ATS3)
PLAT	PF01477	34 - 152	2.8e-08	PLAT/LH2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22170 AT4G39730
fragaria_vesca	FvH4_1g21150 FvH4_1g21150
malus_domestica	MD01G1027400.v1.1 MD15G1326500.v1.1
prunus_persica	Prupe.6G182600_v2.0.a1
pyrus_communis	pycom01g05540 pycom15g28790
rosa_chinensis	RchiOBHm_Chr2g0114931
rosa_laevigata	RLG00000018136
rosa_multiflora	Rmu_sc0002764.1_g000011
rosa_roxburghii	Rroxscaffold_2G00130460
rosa_rugosa	Rorug02G0191900
rosa_samantha	Rh2AG250700 Rh2BG260100 Rh2CG254900 Rh2DG258800
rosa_wichuraiana	Rw2G019550 Rw2G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	380
AccB1I	GGYRCC	1 cut(s)	332
AccII	CGCG	2 cut(s)	282, 467
AccIII	TCCGGA	1 cut(s)	198
AciI	CCGC	5 cut(s)	276, 280, 282, 297, 465
AclWI	GGATC	5 cut(s)	190, 197, 225, 238, 505
AcoI	YGGCCR	2 cut(s)	277, 343
AcyI	GRCGYC	2 cut(s)	333, 377
AfaI	GTAC	2 cut(s)	356, 455
AfiI	CCNNNNNNNGG	2 cut(s)	219, 471
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	2 cut(s)	412, 460
AluI	AGCT	2 cut(s)	412, 460
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	5 cut(s)	190, 197, 225, 238, 505
AlwNI	CAGNNNCTG	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	523
Aor13HI	TCCGGA	1 cut(s)	198
AoxI	GGCC	4 cut(s)	277, 343, 387, 447
ApaI	GGGCCC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	409
AspLEI	GCGC	2 cut(s)	311, 335
AspS9I	GGNCC	6 cut(s)	117, 284, 387, 388, 448, 516
AsuC2I	CCSGG	2 cut(s)	121, 385
AsuHPI	GGTGA	3 cut(s)	286, 313, 385
AvaI	CYCGRG	1 cut(s)	523
AvaII	GGWCC	3 cut(s)	117, 284, 516
BaeGI	GKGCMC	1 cut(s)	391
BamHI	GGATCC	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	2 cut(s)	220, 323
BceAI	ACGGC	3 cut(s)	190, 364, 462
BciT130I	CCWGG	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	176
BcnI	CCSGG	2 cut(s)	121, 385
BcoDI	GTCTC	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	336
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	3 cut(s)	277, 280, 410
BlsI	GCNGC	3 cut(s)	278, 281, 411
Bme1390I	CCNGG	3 cut(s)	121, 214, 385
Bme18I	GGWCC	3 cut(s)	117, 284, 516
BmeT110I	CYCGRG	1 cut(s)	523
BmgT120I	GGNCC	6 cut(s)	117, 284, 387, 388, 448, 516
BmiI	GGNNCC	8 cut(s)	203, 232, 286, 334, 340, 388, 389, 450
BmrFI	CCNGG	3 cut(s)	121, 214, 385
BpuMI	CCSGG	2 cut(s)	121, 385
BsaBI	GATNNNNATC	1 cut(s)	194
BsaHI	GRCGYC	2 cut(s)	333, 377
BsaJI	CCNNGG	4 cut(s)	213, 280, 346, 384
BsaWI	WCCGGW	2 cut(s)	198, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 471
Bse118I	RCCGGY	1 cut(s)	335
Bse8I	GATNNNNATC	1 cut(s)	194
BseAI	TCCGGA	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	4 cut(s)	213, 280, 346, 384
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	2 cut(s)	219, 471
BseRI	GAGGAG	2 cut(s)	14, 17
BseSI	GKGCMC	1 cut(s)	391
BseX3I	CGGCCG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	421
Bsh1236I	CGCG	2 cut(s)	282, 467
Bsh1285I	CGRYCG	2 cut(s)	280, 423
BshFI	GGCC	4 cut(s)	279, 345, 389, 449
BshNI	GGYRCC	1 cut(s)	332
BsiEI	CGRYCG	2 cut(s)	280, 423
BsiHKCI	CYCGRG	1 cut(s)	523
BsiSI	CCGG	7 cut(s)	120, 199, 336, 342, 384, 514, 519
BsiWI	CGTACG	1 cut(s)	453
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	219, 471
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	4 cut(s)	279, 345, 389, 449
BsoBI	CYCGRG	1 cut(s)	523
Bsp120I	GGGCCC	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp13I	TCCGGA	1 cut(s)	198
Bsp143I	GATC	7 cut(s)	126, 189, 195, 230, 420, 468, 510
BspACI	CCGC	5 cut(s)	276, 280, 282, 297, 465
BspANI	GGCC	4 cut(s)	279, 345, 389, 449
BspEI	TCCGGA	1 cut(s)	198
BspFNI	CGCG	2 cut(s)	282, 467
BspLI	GGNNCC	8 cut(s)	203, 232, 286, 334, 340, 388, 389, 450
BspPI	GGATC	5 cut(s)	190, 197, 225, 238, 505
BspT107I	GGYRCC	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	4 cut(s)	213, 280, 346, 384
BssMI	GATC	7 cut(s)	126, 189, 195, 230, 420, 468, 510
BssNI	GRCGYC	2 cut(s)	333, 377
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	2 cut(s)	333, 377
BstC8I	GCNNGC	2 cut(s)	337, 435
BstDSI	CCRYGG	2 cut(s)	280, 346
BstFNI	CGCG	2 cut(s)	282, 467
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	2 cut(s)	311, 335
BstKTI	GATC	7 cut(s)	129, 192, 198, 233, 423, 471, 513
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	7 cut(s)	126, 189, 195, 230, 420, 468, 510
BstMCI	CGRYCG	2 cut(s)	280, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	3 cut(s)	119, 212, 383
BstSLI	GKGCMC	1 cut(s)	391
BstUI	CGCG	2 cut(s)	282, 467
BstV1I	GCAGC	1 cut(s)	421
BstX2I	RGATCY	3 cut(s)	195, 230, 510
BstYI	RGATCY	3 cut(s)	195, 230, 510
BstZI	CGGCCG	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	4 cut(s)	279, 345, 389, 449
BtgI	CCRYGG	2 cut(s)	280, 346
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	2 cut(s)	337, 435
CaiI	CAGNNNCTG	1 cut(s)	412
CciNI	GCGGCCGC	1 cut(s)	277
CfoI	GCGC	2 cut(s)	311, 335
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	6 cut(s)	117, 284, 387, 388, 448, 516
Cfr42I	CCGCGG	1 cut(s)	283
CpoI	CGGWCCG	1 cut(s)	516
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	2 cut(s)	355, 454
CspI	CGGWCCG	1 cut(s)	516
CviQI	GTAC	2 cut(s)	355, 454
DinI	GGCGCC	1 cut(s)	334
DpnI	GATC	7 cut(s)	128, 191, 197, 232, 422, 470, 512
DpnII	GATC	7 cut(s)	126, 189, 195, 230, 420, 468, 510
EaeI	YGGCCR	2 cut(s)	277, 343
EagI	CGGCCG	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EclXI	CGGCCG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	391
Eco47I	GGWCC	3 cut(s)	117, 284, 516
Eco52I	CGGCCG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	391
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
FaiI	YATR	3 cut(s)	81, 393, 395
FaqI	GGGAC	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	277, 280, 410
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	3 cut(s)	277, 280, 410
GlaI	GCGC	2 cut(s)	310, 334
GluI	GCNGC	3 cut(s)	277, 280, 410
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	4 cut(s)	279, 345, 389, 449
HapII	CCGG	7 cut(s)	120, 199, 336, 342, 384, 514, 519
HgaI	GACGC	1 cut(s)	503
HhaI	GCGC	2 cut(s)	311, 335
Hin1I	GRCGYC	2 cut(s)	333, 377
Hin6I	GCGC	2 cut(s)	309, 333
HinP1I	GCGC	2 cut(s)	309, 333
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	3 cut(s)	21, 146, 165
HpaII	CCGG	7 cut(s)	120, 199, 336, 342, 384, 514, 519
HphI	GGTGA	3 cut(s)	286, 313, 385
Hpy166II	GTNNAC	5 cut(s)	100, 109, 361, 381, 417
Hpy188I	TCNGA	2 cut(s)	235, 328
Hpy188III	TCNNGA	5 cut(s)	193, 199, 263, 418, 472
Hpy8I	GTNNAC	5 cut(s)	100, 109, 361, 381, 417
Hpy99I	CGWCG	3 cut(s)	176, 371, 497
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	5 cut(s)	111, 159, 357, 366, 377
HpyCH4V	TGCA	1 cut(s)	483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpySE526I	ACGT	5 cut(s)	111, 159, 357, 366, 377
Hsp92I	GRCGYC	2 cut(s)	333, 377
HspAI	GCGC	2 cut(s)	309, 333
KasI	GGCGCC	1 cut(s)	332
Kpn2I	TCCGGA	1 cut(s)	198
KroI	GCCGGC	1 cut(s)	335
KroNI	GCCGGC	1 cut(s)	337
KspI	CCGCGG	1 cut(s)	283
Kzo9I	GATC	7 cut(s)	126, 189, 195, 230, 420, 468, 510
LmnI	GCTCC	1 cut(s)	344
Lsp1109I	GCAGC	1 cut(s)	421
MaeII	ACGT	5 cut(s)	111, 159, 357, 366, 377
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	7 cut(s)	128, 191, 197, 232, 422, 470, 512
MboI	GATC	7 cut(s)	126, 189, 195, 230, 420, 468, 510
MboII	GAAGA	2 cut(s)	22, 520
MflI	RGATCY	3 cut(s)	195, 230, 510
MhlI	GDGCHC	1 cut(s)	391
Mly113I	GGCGCC	1 cut(s)	333
MlyI	GAGTC	3 cut(s)	15, 140, 159
MmeI	TCCRAC	2 cut(s)	174, 258
MroI	TCCGGA	1 cut(s)	198
MroNI	GCCGGC	1 cut(s)	335
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	3 cut(s)	276, 282, 412
MspI	CCGG	7 cut(s)	120, 199, 336, 342, 384, 514, 519
MspR9I	CCNGG	3 cut(s)	121, 214, 385
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	2 cut(s)	282, 467
MwoI	GCNNNNNNNGC	1 cut(s)	288
NaeI	GCCGGC	1 cut(s)	337
NarI	GGCGCC	1 cut(s)	333
NciI	CCSGG	2 cut(s)	121, 385
NdeII	GATC	7 cut(s)	126, 189, 195, 230, 420, 468, 510
NgoMIV	GCCGGC	1 cut(s)	335
NlaIV	GGNNCC	8 cut(s)	203, 232, 286, 334, 340, 388, 389, 450
NmuCI	GTSAC	1 cut(s)	373
NotI	GCGGCCGC	1 cut(s)	277
PaeR7I	CTCGAG	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	3 cut(s)	354, 363, 498
PdiI	GCCGGC	1 cut(s)	337
Pfl23II	CGTACG	1 cut(s)	453
PflFI	GACNNNGTC	2 cut(s)	121, 497
PkrI	GCNGC	3 cut(s)	278, 281, 411
Ple19I	CGATCG	1 cut(s)	423
PleI	GAGTC	3 cut(s)	15, 140, 159
PluTI	GGCGCC	1 cut(s)	336
PpsI	GAGTC	3 cut(s)	15, 140, 159
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspLI	CGTACG	1 cut(s)	453
PspN4I	GGNNCC	8 cut(s)	203, 232, 286, 334, 340, 388, 389, 450
PspOMI	GGGCCC	1 cut(s)	387
PspPI	GGNCC	6 cut(s)	117, 284, 387, 388, 448, 516
PspXI	VCTCGAGB	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	412
PsuI	RGATCY	3 cut(s)	195, 230, 510
PsyI	GACNNNGTC	2 cut(s)	121, 497
PvuI	CGATCG	1 cut(s)	423
PvuII	CAGCTG	1 cut(s)	412
RsaI	GTAC	2 cut(s)	356, 455
RsaNI	GTAC	2 cut(s)	355, 454
RseI	CAYNNNNRTG	1 cut(s)	158
Rsr2I	CGGWCCG	1 cut(s)	516
RsrII	CGGWCCG	1 cut(s)	516
SacII	CCGCGG	1 cut(s)	283
SatI	GCNGC	3 cut(s)	277, 280, 410
Sau3AI	GATC	7 cut(s)	126, 189, 195, 230, 420, 468, 510
Sau96I	GGNCC	6 cut(s)	117, 284, 387, 388, 448, 516
SchI	GAGTC	3 cut(s)	15, 140, 159
ScrFI	CCNGG	3 cut(s)	121, 214, 385
SduI	GDGCHC	1 cut(s)	391
SfoI	GGCGCC	1 cut(s)	334
Sfr274I	CTCGAG	1 cut(s)	523
Sfr303I	CCGCGG	1 cut(s)	283
SgrBI	CCGCGG	1 cut(s)	283
SinI	GGWCC	3 cut(s)	117, 284, 516
SlaI	CTCGAG	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
SsiI	CCGC	5 cut(s)	276, 280, 282, 297, 465
SspDI	GGCGCC	1 cut(s)	332
StyD4I	CCNGG	3 cut(s)	119, 212, 383
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	5 cut(s)	114, 162, 360, 369, 380
TaqI	TCGA	7 cut(s)	125, 192, 207, 369, 423, 501, 524
TauI	GCSGC	2 cut(s)	279, 282
TscAI	CASTG	1 cut(s)	434
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	409
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	528
TspGWI	ACGGA	2 cut(s)	158, 195
TspRI	CASTG	1 cut(s)	434
Tth111I	GACNNNGTC	2 cut(s)	121, 497
VpaK11BI	GGWCC	3 cut(s)	117, 284, 516
XhoI	CTCGAG	1 cut(s)	523
ZraI	GACGTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.