Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013158

Physical Location & Seq

Genomic Coordinates Reverse (-)

9457786 .. 9460919

Gene Structure 3134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGTCATCTAGAATCTGCGCTATGGCCAAACCAAATGATGCTGAGACTCTTTCATCATCAGTAGATATGTCACTTAGCCCGCGAGTTCAGTCCTTAAAACCTTCCAAGACTATGGTTATAACCGATCTTGCAGCCACTCTTGTTCAATCCGGTGTTCCGGTTATTAGACTAGCTGCGGGAGAACCCGATTTCGACACTCCCAAAGTCGTAGCTGAGGCTGGGATCAACGCGATTCGAGAAGGTTTTACTAGGTATACGTTAAATGCAGGTATTACAGAACTCAGAGAAGCAATATGTCGAAAGCTAAAAGAGGAGAATGGATTGTCTTATGCGCCTGATCAGATCTTGGTTAGTAATGGAGCTAAACAAAGTCTCTTACAAGCAGTGCTTGCAGTTTGTTCTCCTGGAGATGAAGTTATAATTCCTGCACCGTATTGGGTGAGTTACACAGAACAGGCGAGATTGGCTGATGCAACGCCCGTGGTTATTCCTACCAAGATTTCTAACAATTTTTTGTTGGATCCAAAGGATCTTGAGTCTAAATTGACTGAAAAATCTAGACTTCTTATTCTCTGCTCTCCTTCCAACCCTACTGGATCTGTTTACCCCAAGAGTTTGCTCGAAGAGATTGCACGGATCATTGCTAAGCATCCAAGACTTCTGGTGCTTTCGGATGAAATATATGAACACATTATTTATGCACCTGCAACACACACAAGCTTTGCTTCTTTGCCTGACATGTATGAAAGAACTTTGACAGTAAACGGTTTCTCAAAGGCTTTCGCAATGACGGGTTGGAGGCTTGGATATCTTGCTGGTCCTAAACATATTGTGGCAGCTTGCAGTAAATTACAAGGCCAGGTTAGTTCAGGAGCTAGTAGCATTGCTCAGAAAGCAGGTGTTGCTGCGCTTGGGTTAGGCAAAGCTGGAGGAGAAACGGTTGCAGAGATGGTTAAAGCTTATAGAGAAAGACGAGATTTCTTGGTTAAAAGCTTAGGTGATATCAAAGGTGTTAAGATCTCTGAACCTCAGGGAGCTTTTTATCTCTTTATTGACTTCAGTGCTTACTATGGATCAGAAGCTGAAGGTTTTGGTTTGATCAATGATTCGTCGTCTCTTGCACTATACTTTCTTGACAAGTTTCAGGTTGCAATGGTTCCTGGTGATGCTTTTGGAGATGATAGTTGTATCCGAATATCTTATGCCACATCTCTCGACGTTCTTCAAGCAGCTGTTGAGAAGATCAGGAAAGCCCTTGAGCCACTCCGTGCCACTGTCTCCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004069 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009095 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016769 GO:0019438 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0033853 GO:0033854 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 ko00400 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00350 map00360 map00400 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

428

Amino Acids

46.04

Weight (kDa)

6.18

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	100 - 462	8e-78	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22250 AT2G22250 AT2G22250
fragaria_vesca	FvH4_1g21500
malus_domestica	MD01G1024400.v1.1 MD15G1329000.v1.1
prunus_persica	Prupe.6G179700_v2.0.a1
pyrus_communis	pycom01g05210 pycom01g05220 pycom15g29680 pycom15g29690 pycom15g29700
rosa_chinensis	RchiOBHm_Chr2g0115381
rosa_laevigata	RLG00000018181
rosa_multiflora	Rmu_sc0001897.1_g000009
rosa_roxburghii	Rroxscaffold_2G00130870
rosa_rugosa	Rorug02G0196000
rosa_wichuraiana	Rw2G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	119, 419
AarI	CACCTGC	2 cut(s)	712, 887
Acc36I	ACCTGC	3 cut(s)	257, 712, 887
AccI	GTMKAC	1 cut(s)	254
AccII	CGCG	2 cut(s)	82, 230
AciI	CCGC	2 cut(s)	80, 176
AclWI	GGATC	7 cut(s)	230, 515, 528, 537, 604, 644, 1081
AcoI	YGGCCR	1 cut(s)	24
AcuI	CTGAAG	2 cut(s)	1042, 1104
AdeI	CACNNNGTG	1 cut(s)	1268
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	2 cut(s)	146, 1226
AjnI	CCWGG	3 cut(s)	403, 858, 1159
Alw26I	GTCTC	4 cut(s)	38, 377, 1119, 1282
AlwI	GGATC	7 cut(s)	230, 515, 528, 537, 604, 644, 1081
AlwNI	CAGNNNCTG	1 cut(s)	1082
AoxI	GGCC	2 cut(s)	24, 856
ApeKI	GCWGC	5 cut(s)	131, 173, 836, 905, 1229
AspLEI	GCGC	3 cut(s)	20, 334, 910
AspS9I	GGNCC	1 cut(s)	818
AsuHPI	GGTGA	3 cut(s)	451, 1010, 1175
AvaII	GGWCC	1 cut(s)	818
AxyI	CCTNAGG	1 cut(s)	1029
BalI	TGGCCA	1 cut(s)	26
BamHI	GGATCC	1 cut(s)	520
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	5 cut(s)	143, 160, 848, 892, 1241
BccI	CCATC	1 cut(s)	943
BcgI	CGANNNNNNTGC	2 cut(s)	611, 645
BciT130I	CCWGG	3 cut(s)	405, 860, 1161
BciVI	GTATCC	1 cut(s)	1199
BclI	TGATCA	2 cut(s)	337, 1098
BcoDI	GTCTC	4 cut(s)	38, 377, 1119, 1282
BfaI	CTAG	5 cut(s)	9, 170, 249, 558, 876
BfuAI	ACCTGC	3 cut(s)	257, 712, 887
BfuI	GTATCC	1 cut(s)	1199
BglII	AGATCT	2 cut(s)	342, 1017
BisI	GCNGC	5 cut(s)	132, 174, 837, 906, 1230
BlpI	GCTNAGC	1 cut(s)	645
BlsI	GCNGC	5 cut(s)	133, 175, 838, 907, 1231
Bme1390I	CCNGG	3 cut(s)	405, 860, 1161
Bme18I	GGWCC	1 cut(s)	818
BmgT120I	GGNCC	1 cut(s)	818
BmiI	GGNNCC	2 cut(s)	522, 1158
BmrFI	CCNGG	3 cut(s)	405, 860, 1161
BmsI	GCATC	4 cut(s)	28, 460, 658, 1156
BpmI	CTGGAG	2 cut(s)	426, 948
Bpu10I	CCTNAGC	2 cut(s)	213, 994
Bpu1102I	GCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	554, 1277
BsaJI	CCNNGG	1 cut(s)	480
BsaWI	WCCGGW	2 cut(s)	149, 157
BsaXI	ACNNNNNCTCC	4 cut(s)	399, 429, 924, 954
Bse1I	ACTGG	1 cut(s)	598
Bse21I	CCTNAGG	1 cut(s)	1029
Bse3DI	GCAATG	4 cut(s)	639, 792, 882, 1158
BseBI	CCWGG	3 cut(s)	405, 860, 1161
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	2 cut(s)	649, 679
BseMI	GCAATG	4 cut(s)	639, 792, 882, 1158
BseMII	CTCAG	5 cut(s)	33, 204, 295, 902, 1043
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	2 cut(s)	326, 945
BseXI	GCAGC	5 cut(s)	143, 160, 848, 892, 1241
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	2 cut(s)	82, 230
BshFI	GGCC	2 cut(s)	26, 858
BsiSI	CCGG	2 cut(s)	150, 158
BsmAI	GTCTC	4 cut(s)	38, 377, 1119, 1282
BsmBI	CGTCTC	1 cut(s)	1119
BsnI	GGCC	2 cut(s)	26, 858
Bsp1720I	GCTNAGC	1 cut(s)	645
BspACI	CCGC	2 cut(s)	80, 176
BspANI	GGCC	2 cut(s)	26, 858
BspCNI	CTCAG	5 cut(s)	34, 205, 294, 901, 1042
BspFNI	CGCG	2 cut(s)	82, 230
BspLI	GGNNCC	2 cut(s)	522, 1158
BspMI	ACCTGC	3 cut(s)	257, 712, 887
BspPI	GGATC	7 cut(s)	230, 515, 528, 537, 604, 644, 1081
BsrDI	GCAATG	4 cut(s)	639, 792, 882, 1158
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	480
BssNAI	GTATAC	1 cut(s)	255
Bst1107I	GTATAC	1 cut(s)	255
Bst2UI	CCWGG	3 cut(s)	405, 860, 1161
Bst4CI	ACNGT	5 cut(s)	432, 760, 767, 940, 1276
Bst6I	CTCTTC	1 cut(s)	618
BstAPI	GCANNNNNTGC	2 cut(s)	389, 902
BstC8I	GCNNGC	3 cut(s)	80, 390, 841
BstDEI	CTNAG	8 cut(s)	42, 74, 213, 281, 645, 888, 994, 1029
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	2 cut(s)	649, 679
BstFNI	CGCG	2 cut(s)	82, 230
BstHHI	GCGC	3 cut(s)	20, 334, 910
BstMAI	GTCTC	4 cut(s)	38, 377, 1119, 1282
BstMWI	GCNNNNNNNGC	4 cut(s)	389, 464, 893, 902
BstNI	CCWGG	3 cut(s)	405, 860, 1161
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	3 cut(s)	403, 858, 1159
BstUI	CGCG	2 cut(s)	82, 230
BstV1I	GCAGC	5 cut(s)	143, 160, 848, 892, 1241
BstX2I	RGATCY	5 cut(s)	342, 520, 529, 596, 1017
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	5 cut(s)	342, 520, 529, 596, 1017
BstZ17I	GTATAC	1 cut(s)	255
Bsu36I	CCTNAGG	1 cut(s)	1029
BsuI	GTATCC	1 cut(s)	1199
BsuRI	GGCC	2 cut(s)	26, 858
BtgI	CCRYGG	1 cut(s)	480
BtsCI	GGATG	2 cut(s)	649, 679
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	3 cut(s)	390, 1066, 1272
BveI	ACCTGC	3 cut(s)	257, 712, 887
Cac8I	GCNNGC	3 cut(s)	80, 390, 841
CaiI	CAGNNNCTG	1 cut(s)	1082
CfoI	GCGC	3 cut(s)	20, 334, 910
Cfr13I	GGNCC	1 cut(s)	818
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	1 cut(s)	739
DdeI	CTNAG	8 cut(s)	42, 74, 213, 281, 645, 888, 994, 1029
DraIII	CACNNNGTG	1 cut(s)	1268
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco32I	GATATC	2 cut(s)	809, 1003
Eco47I	GGWCC	1 cut(s)	818
Eco57I	CTGAAG	2 cut(s)	1042, 1104
Eco81I	CCTNAGG	1 cut(s)	1029
EcoRII	CCWGG	3 cut(s)	403, 858, 1159
EcoRV	GATATC	2 cut(s)	809, 1003
Esp3I	CGTCTC	1 cut(s)	1119
FaeI	CATG	1 cut(s)	742
FalI	AAGNNNNNCTT	4 cut(s)	372, 404, 709, 741
FatI	CATG	1 cut(s)	738
FauI	CCCGC	2 cut(s)	87, 169
FbaI	TGATCA	2 cut(s)	337, 1098
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	5 cut(s)	132, 174, 837, 906, 1230
FokI	GGATG	2 cut(s)	636, 686
Fsp4HI	GCNGC	5 cut(s)	132, 174, 837, 906, 1230
FspBI	CTAG	5 cut(s)	9, 170, 249, 558, 876
GlaI	GCGC	3 cut(s)	19, 333, 909
GluI	GCNGC	5 cut(s)	132, 174, 837, 906, 1230
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	2 cut(s)	426, 948
HaeIII	GGCC	2 cut(s)	26, 858
HapII	CCGG	2 cut(s)	150, 158
HhaI	GCGC	3 cut(s)	20, 334, 910
Hin1II	CATG	1 cut(s)	742
Hin6I	GCGC	3 cut(s)	18, 332, 908
HinP1I	GCGC	3 cut(s)	18, 332, 908
HindIII	AAGCTT	3 cut(s)	718, 957, 991
HinfI	GANTC	5 cut(s)	12, 46, 232, 536, 1106
HpaII	CCGG	2 cut(s)	150, 158
HphI	GGTGA	3 cut(s)	451, 1010, 1175
Hpy166II	GTNNAC	3 cut(s)	255, 604, 763
Hpy188I	TCNGA	7 cut(s)	284, 342, 673, 891, 1024, 1078, 1193
Hpy188III	TCNNGA	8 cut(s)	9, 236, 533, 558, 870, 1133, 1214, 1246
Hpy8I	GTNNAC	3 cut(s)	255, 604, 763
Hpy99I	CGWCG	2 cut(s)	1114, 1220
HpyAV	CCTTC	4 cut(s)	111, 233, 591, 1079
HpyCH4III	ACNGT	5 cut(s)	432, 760, 767, 940, 1276
HpyCH4IV	ACGT	2 cut(s)	257, 1218
HpyF10VI	GCNNNNNNNGC	4 cut(s)	389, 464, 893, 902
HpyF3I	CTNAG	8 cut(s)	42, 74, 213, 281, 645, 888, 994, 1029
HpySE526I	ACGT	2 cut(s)	257, 1218
Hsp92II	CATG	1 cut(s)	742
HspAI	GCGC	3 cut(s)	18, 332, 908
Ksp22I	TGATCA	2 cut(s)	337, 1098
LmnI	GCTCC	3 cut(s)	359, 872, 1034
Lsp1109I	GCAGC	5 cut(s)	143, 160, 848, 892, 1241
LweI	GCATC	4 cut(s)	28, 460, 658, 1156
MaeI	CTAG	5 cut(s)	9, 170, 249, 558, 876
MaeII	ACGT	2 cut(s)	257, 1218
MaeIII	GTNAC	2 cut(s)	69, 443
MboII	GAAGA	3 cut(s)	635, 1214, 1252
MflI	RGATCY	5 cut(s)	342, 520, 529, 596, 1017
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	4 cut(s)	420, 508, 542, 848
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	2 cut(s)	40, 545
MmeI	TCCRAC	3 cut(s)	498, 609, 776
MnlI	CCTC	5 cut(s)	208, 304, 792, 923, 1038
Mox20I	TGGCCA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	6 cut(s)	95, 260, 954, 987, 1014, 1285
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	1232
MspI	CCGG	2 cut(s)	150, 158
MspR9I	CCNGG	3 cut(s)	405, 860, 1161
MvaI	CCWGG	3 cut(s)	405, 860, 1161
MvnI	CGCG	2 cut(s)	82, 230
MwoI	GCNNNNNNNGC	4 cut(s)	389, 464, 893, 902
NlaIII	CATG	1 cut(s)	742
NlaIV	GGNNCC	2 cut(s)	522, 1158
NmuCI	GTSAC	1 cut(s)	69
NspI	RCATGY	1 cut(s)	742
PaqCI	CACCTGC	2 cut(s)	712, 887
PciI	ACATGT	1 cut(s)	738
PfeI	GAWTC	3 cut(s)	12, 232, 1106
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	5 cut(s)	133, 175, 838, 907, 1231
PleI	GAGTC	2 cut(s)	40, 544
PpsI	GAGTC	2 cut(s)	40, 544
PscI	ACATGT	1 cut(s)	738
PsiI	TTATAA	2 cut(s)	119, 419
Psp6I	CCWGG	3 cut(s)	403, 858, 1159
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	3 cut(s)	403, 858, 1159
PspN4I	GGNNCC	2 cut(s)	522, 1158
PspPI	GGNCC	1 cut(s)	818
PstNI	CAGNNNCTG	1 cut(s)	1082
PsuI	RGATCY	5 cut(s)	342, 520, 529, 596, 1017
PvuII	CAGCTG	1 cut(s)	1232
SaqAI	TTAA	6 cut(s)	95, 260, 954, 987, 1014, 1285
SatI	GCNGC	5 cut(s)	132, 174, 837, 906, 1230
Sau96I	GGNCC	1 cut(s)	818
SchI	GAGTC	2 cut(s)	40, 545
ScrFI	CCNGG	3 cut(s)	405, 860, 1161
SfaNI	GCATC	4 cut(s)	28, 460, 658, 1156
SinI	GGWCC	1 cut(s)	818
SmlI	CTYRAG	2 cut(s)	533, 1256
SmoI	CTYRAG	2 cut(s)	533, 1256
Sse9I	AATT	4 cut(s)	420, 508, 542, 848
SsiI	CCGC	2 cut(s)	80, 176
SspMI	CTAG	5 cut(s)	9, 170, 249, 558, 876
StyD4I	CCNGG	3 cut(s)	403, 858, 1159
TaaI	ACNGT	5 cut(s)	432, 760, 767, 940, 1276
TaiI	ACGT	2 cut(s)	260, 1221
TaqI	TCGA	5 cut(s)	192, 235, 298, 621, 1215
TasI	AATT	4 cut(s)	420, 508, 542, 848
TfiI	GAWTC	3 cut(s)	12, 232, 1106
Tru1I	TTAA	6 cut(s)	95, 260, 954, 987, 1014, 1285
Tru9I	TTAA	6 cut(s)	95, 260, 954, 987, 1014, 1285
TscAI	CASTG	3 cut(s)	390, 1066, 1279
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	5 cut(s)	131, 173, 836, 905, 1229
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	5 cut(s)	42, 426, 690, 699, 759
TspGWI	ACGGA	3 cut(s)	649, 1256, 1270
TspRI	CASTG	3 cut(s)	390, 1066, 1279
VpaK11BI	GGWCC	1 cut(s)	818
XbaI	TCTAGA	2 cut(s)	8, 557
XceI	RCATGY	1 cut(s)	742
XmiI	GTMKAC	1 cut(s)	254
XspI	CTAG	5 cut(s)	9, 170, 249, 558, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.