Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013158

Physical Location & Seq

Genomic Coordinates Forward (+)

26650843 .. 26651837

Gene Structure 995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29680.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCATCCCATCTACCAATTTGCACTGATACAATCGCAACTTGCAAAGCCTCTTCCCACCAACCCCCGCTCCATCTGTCTCTTTCGCTATTCCTTTCCATATTCAAAAAAAAAAAAAATGCAATTTTCCAATTCACCAAACCCAATTGGAGGAGGAATCCAATTCCAACAACAGCACCAACTCCCCCAGCCCCAATGGCCGCCTTTTCCCTCCAAACCTCCTCCTCCTCCTCCTCCTCCGGCATTGCCCGTCTCAGTTTCGAAACCCGCATCCCCGGATCCAATTTGGGTGCAGACCCGAAATCCGTTTATTTTCCTTGTCAGCCTCGTGTGCTTCCTCTTAAGCATCGCTGCAACAGTAAGAGTAAATCAAGAGGAGGAGTGGTGATGGCAGTGGCAGTGAGTGGGAATGACCAGACCCAAGTGGAAGTTGACGTTTCTCTGAGCCCACGAGTCAACTCCGTCAAGCCTTCCAAGACTGTTGCCATTACTGACCAGGCCACGGCTCTCGTGCAAGCCGGAGTGCCCGTCATTCGATTGGCTGCCGGTGAACCTGATTTCGATACCCCTTCCGTCATAGCTGAGGCCGGTATTAATGCGATTCGTGAAGGATTCACGAGGTACACACCAAATGCAGGAACTTTGGAGCTGCGCCAAGCAATTTGTCATAAGCTCAAAGAGGAGAATGGGATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004069 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009095 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016769 GO:0019438 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0033853 GO:0033854 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 ko00400 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00350 map00360 map00400 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

233

Amino Acids

24.8

Weight (kDa)

9.74

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22250 AT2G22250 AT2G22250
fragaria_vesca	FvH4_1g21500
malus_domestica	MD01G1024400.v1.1 MD15G1329000.v1.1
prunus_persica	Prupe.6G179700_v2.0.a1
pyrus_communis	pycom01g05210 pycom01g05220 pycom15g29680 pycom15g29690 pycom15g29700
rosa_chinensis	RchiOBHm_Chr2g0115381
rosa_laevigata	RLG00000018181
rosa_multiflora	Rmu_sc0001897.1_g000009
rosa_roxburghii	Rroxscaffold_2G00130870
rosa_rugosa	Rorug02G0196000
rosa_wichuraiana	Rw2G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	70
AciI	CCGC	3 cut(s)	68, 201, 268
AclWI	GGATC	3 cut(s)	273, 286, 698
AcoI	YGGCCR	1 cut(s)	198
AfaI	GTAC	1 cut(s)	623
AfiI	CCNNNNNNNGG	3 cut(s)	150, 502, 635
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	495
AluBI	AGCT	3 cut(s)	581, 649, 673
AluI	AGCT	3 cut(s)	581, 649, 673
Alw26I	GTCTC	2 cut(s)	84, 257
AlwI	GGATC	3 cut(s)	273, 286, 698
AoxI	GGCC	3 cut(s)	198, 498, 585
ApeKI	GCWGC	3 cut(s)	351, 542, 649
AseI	ATTAAT	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	654
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	127, 397, 560
AsuII	TTCGAA	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	528
BamHI	GGATCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	449
BauI	CACGAG	4 cut(s)	327, 450, 509, 616
BbvCI	CCTCAGC	1 cut(s)	582
BbvI	GCAGC	3 cut(s)	338, 529, 636
BccI	CCATC	3 cut(s)	18, 81, 382
BceAI	ACGGC	1 cut(s)	519
BciT130I	CCWGG	1 cut(s)	497
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	84, 257
BfrI	CTTAAG	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	4 cut(s)	201, 352, 543, 650
BlsI	GCNGC	4 cut(s)	202, 353, 544, 651
Bme1390I	CCNGG	2 cut(s)	276, 497
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	2 cut(s)	276, 497
BmsI	GCATC	3 cut(s)	14, 279, 355
Bpu10I	CCTNAGC	1 cut(s)	582
Bpu14I	TTCGAA	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	274, 501
BsaXI	ACNNNNNCTCC	6 cut(s)	54, 84, 369, 399, 513, 543
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 502, 635
Bse118I	RCCGGY	2 cut(s)	545, 587
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	2 cut(s)	274, 501
BseGI	GGATG	2 cut(s)	5, 270
BseLI	CCNNNNNNNGG	3 cut(s)	150, 502, 635
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	3 cut(s)	268, 434, 573
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	3 cut(s)	338, 529, 636
BseYI	CCCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	200, 500, 587
BsiSI	CCGG	5 cut(s)	240, 276, 519, 546, 588
BslI	CCNNNNNNNGG	3 cut(s)	150, 502, 635
BsmAI	GTCTC	2 cut(s)	84, 257
BsmBI	CGTCTC	1 cut(s)	257
BsnI	GGCC	3 cut(s)	200, 500, 587
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	449, 528
Bsp143I	GATC	2 cut(s)	278, 690
BspACI	CCGC	3 cut(s)	68, 201, 268
BspANI	GGCC	3 cut(s)	200, 500, 587
BspCNI	CTCAG	3 cut(s)	267, 435, 574
BspLI	GGNNCC	1 cut(s)	280
BspPI	GGATC	3 cut(s)	273, 286, 698
BspT104I	TTCGAA	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	341
BsrBI	CCGCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	2 cut(s)	545, 587
BssAI	RCCGGY	2 cut(s)	545, 587
BssECI	CCNNGG	2 cut(s)	274, 501
BssMI	GATC	2 cut(s)	278, 690
BssSI	CACGAG	4 cut(s)	327, 450, 509, 616
Bst2BI	CACGAG	4 cut(s)	327, 450, 509, 616
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	2 cut(s)	359, 481
Bst6I	CTCTTC	1 cut(s)	58
BstAFI	CTTAAG	1 cut(s)	341
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	3 cut(s)	254, 443, 582
BstDSI	CCRYGG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	5, 270
BstHHI	GCGC	1 cut(s)	654
BstKTI	GATC	2 cut(s)	281, 693
BstMAI	GTCTC	2 cut(s)	84, 257
BstMBI	GATC	2 cut(s)	278, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 331
BstNI	CCWGG	1 cut(s)	497
BstSCI	CCNGG	2 cut(s)	274, 495
BstSLI	GKGCMC	1 cut(s)	528
BstV1I	GCAGC	3 cut(s)	338, 529, 636
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	3 cut(s)	200, 500, 587
BtgI	CCRYGG	1 cut(s)	501
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	5, 270
BtsI	GCAGTG	2 cut(s)	399, 405
BtsIMutI	CAGTG	3 cut(s)	24, 399, 405
Cac8I	GCNNGC	1 cut(s)	516
CfoI	GCGC	1 cut(s)	654
Cfr10I	RCCGGY	2 cut(s)	545, 587
Csp6I	GTAC	1 cut(s)	622
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	3 cut(s)	254, 443, 582
DpnI	GATC	2 cut(s)	280, 692
DpnII	GATC	2 cut(s)	278, 690
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	449
Esp3I	CGTCTC	1 cut(s)	257
FaiI	YATR	3 cut(s)	101, 578, 669
FauI	CCCGC	2 cut(s)	75, 275
Fnu4HI	GCNGC	4 cut(s)	201, 352, 543, 650
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	4 cut(s)	201, 352, 543, 650
GlaI	GCGC	1 cut(s)	653
GluI	GCNGC	4 cut(s)	201, 352, 543, 650
GsaI	CCCAGC	1 cut(s)	191
HaeIII	GGCC	3 cut(s)	200, 500, 587
HapII	CCGG	5 cut(s)	240, 276, 519, 546, 588
HhaI	GCGC	1 cut(s)	654
Hin6I	GCGC	1 cut(s)	652
HinP1I	GCGC	1 cut(s)	652
HincII	GTYRAC	2 cut(s)	433, 457
HindII	GTYRAC	2 cut(s)	433, 457
HinfI	GANTC	4 cut(s)	157, 453, 601, 612
HpaII	CCGG	5 cut(s)	240, 276, 519, 546, 588
HphI	GGTGA	3 cut(s)	127, 397, 560
Hpy166II	GTNNAC	4 cut(s)	433, 457, 551, 624
Hpy188I	TCNGA	1 cut(s)	444
Hpy188III	TCNNGA	3 cut(s)	372, 605, 616
Hpy8I	GTNNAC	4 cut(s)	433, 457, 551, 624
HpyAV	CCTTC	3 cut(s)	480, 579, 602
HpyCH4III	ACNGT	2 cut(s)	359, 481
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	7 cut(s)	24, 45, 122, 293, 354, 514, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 331
HpyF3I	CTNAG	3 cut(s)	254, 443, 582
HpySE526I	ACGT	1 cut(s)	435
HspAI	GCGC	1 cut(s)	652
Kzo9I	GATC	2 cut(s)	278, 690
LmnI	GCTCC	2 cut(s)	75, 646
Lsp1109I	GCAGC	3 cut(s)	338, 529, 636
LweI	GCATC	3 cut(s)	14, 279, 355
MaeII	ACGT	1 cut(s)	435
MalI	GATC	2 cut(s)	280, 692
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	2 cut(s)	278, 690
MboII	GAAGA	1 cut(s)	45
MfeI	CAATTG	1 cut(s)	145
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	2 cut(s)	449, 528
MluCI	AATT	7 cut(s)	18, 123, 131, 145, 162, 283, 660
MlyI	GAGTC	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	191
MseI	TTAA	3 cut(s)	342, 594, 697
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	5 cut(s)	240, 276, 519, 546, 588
MspR9I	CCNGG	2 cut(s)	276, 497
MunI	CAATTG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	2 cut(s)	197, 331
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	278, 690
NlaIV	GGNNCC	1 cut(s)	280
NspV	TTCGAA	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	157, 601, 612
PkrI	GCNGC	4 cut(s)	202, 353, 544, 651
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
PshBI	ATTAAT	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	495
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SaqAI	TTAA	3 cut(s)	342, 594, 697
SatI	GCNGC	4 cut(s)	201, 352, 543, 650
Sau3AI	GATC	2 cut(s)	278, 690
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	2 cut(s)	276, 497
SduI	GDGCHC	2 cut(s)	449, 528
SetI	ASST	7 cut(s)	221, 438, 556, 583, 623, 651, 675
SfaNI	GCATC	3 cut(s)	14, 279, 355
SfuI	TTCGAA	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	7 cut(s)	18, 123, 131, 145, 162, 283, 660
SsiI	CCGC	3 cut(s)	68, 201, 268
StyD4I	CCNGG	2 cut(s)	274, 495
TaaI	ACNGT	2 cut(s)	359, 481
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	3 cut(s)	261, 535, 561
TasI	AATT	7 cut(s)	18, 123, 131, 145, 162, 283, 660
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	3 cut(s)	157, 601, 612
Tru1I	TTAA	3 cut(s)	342, 594, 697
Tru9I	TTAA	3 cut(s)	342, 594, 697
TscAI	CASTG	3 cut(s)	31, 399, 405
TseI	GCWGC	3 cut(s)	351, 542, 649
TspGWI	ACGGA	3 cut(s)	295, 451, 562
TspRI	CASTG	3 cut(s)	31, 399, 405
Vha464I	CTTAAG	1 cut(s)	341
VspI	ATTAAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.