Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013158

Physical Location & Seq

Genomic Coordinates Forward (+)

26657095 .. 26659538

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCCGCCTTTTCCCTCCAAACCTCCTCCTCCTCCGGCATTGCCCGTCTCAGTTTCGAAACCCGCATCCCCGGATCCAATTTGGGTGCAGACCCGAAATCCGTTTATTTTCCTTGTCAGCCTCGTGTGCTTCCTCTTAAGCATCGCTGCAACAGTCAGAGTAAATCAAGAGGAGGAGTGGTGATGGCAGCGGCAGCGAGTGGGAATGACCAGAGCCAAGTGGAAGTTGACGTTTCTCTGAGCCCACGAGTCAACTCCGTCAAGCCTTCCAAGACTGTTGCCATTACTGACCAGGCCACGGCTCTCGTGCAAGCCGGAGTGCCCGTCATTCGATTGGCTGCCGGTGAACCTGATTTCGATACCCCTTCCGTCATAGCTGAGGCCGGTATTAATGCGATTCGTGAAGGATTCACGAGGTACACACCAAATGCAGGAACTTTGGAGCTGCGCCAAGCAATTTGTCATAAGCTCAAAGAGGAGAATGGGATCACTTACACACAGGATCAGATCGTAGTTAGCAATGGAGCCAAGCAGAGCATCGTTCAAGCTGTGCTTGCAGTTTGTTCCCCAGGAGACGAGGTTATAATTCCAGCTCCATTTTGGGTGAGTTACACTGAAATGGCAGTGATGGCTGATGCAACTCCTGTGATTCTTCCAACGAGCATCTCCAATGATTTTCTCTTGGATCGATCAAAACTGCTCGAATCCAAACTCACGGAGAAGTCAAGACTGTTGATTCTTTGTTCTCCATCCAACCCCACAGGGTCTGTTTACCCCAAGAGTTTGCTTCAAGAGATTGCTAAGATTGTAGCAAAGCATCCCAGGCTTTTGGTTATTTCTGATGAAATATATGAACACATAATTTACGCACCGGCAACTCACACAAGCTTTGCATCCTTGCCAGGCATGTGGGAGAGGACTCTGACAATCAATGGCTTTTCCAAGGCTTTTGCAATGACTGGTTGGCGACTTGGATATATTGCCGGGCCTAAACACTTTGTTACGGCATGTGGAAAGCTCCAGAGTCAGGGGTGGTATAGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004069 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009095 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016769 GO:0019438 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0033853 GO:0033854 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 ko00400 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00350 map00360 map00400 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

349

Amino Acids

37.45

Weight (kDa)

8.66

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22250 AT2G22250 AT2G22250
fragaria_vesca	FvH4_1g21500
malus_domestica	MD01G1024400.v1.1 MD15G1329000.v1.1
prunus_persica	Prupe.6G179700_v2.0.a1
pyrus_communis	pycom01g05210 pycom01g05220 pycom15g29680 pycom15g29690 pycom15g29700
rosa_chinensis	RchiOBHm_Chr2g0115381
rosa_laevigata	RLG00000018181
rosa_multiflora	Rmu_sc0001897.1_g000009
rosa_roxburghii	Rroxscaffold_2G00130870
rosa_rugosa	Rorug02G0196000
rosa_wichuraiana	Rw2G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AciI	CCGC	3 cut(s)	6, 64, 191
AclWI	GGATC	5 cut(s)	69, 82, 494, 510, 693
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	3 cut(s)	298, 431, 1027
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	545, 791
AjnI	CCWGG	4 cut(s)	291, 568, 821, 901
AluBI	AGCT	7 cut(s)	377, 445, 469, 548, 593, 888, 1018
AluI	AGCT	7 cut(s)	377, 445, 469, 548, 593, 888, 1018
Alw26I	GTCTC	2 cut(s)	53, 567
AlwI	GGATC	5 cut(s)	69, 82, 494, 510, 693
AlwNI	CAGNNNCTG	1 cut(s)	767
AoxI	GGCC	4 cut(s)	3, 294, 381, 986
ApeKI	GCWGC	5 cut(s)	147, 188, 194, 338, 445
AseI	ATTAAT	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	986
AsuC2I	CCSGG	2 cut(s)	72, 985
AsuHPI	GGTGA	3 cut(s)	193, 356, 616
AsuII	TTCGAA	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	324
BamHI	GGATCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	245
BauI	CACGAG	4 cut(s)	123, 246, 305, 412
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	5 cut(s)	134, 200, 206, 325, 432
BccI	CCATC	3 cut(s)	178, 622, 757
BceAI	ACGGC	2 cut(s)	315, 1020
BciT130I	CCWGG	4 cut(s)	293, 570, 823, 903
BcnI	CCSGG	2 cut(s)	72, 985
BcoDI	GTCTC	2 cut(s)	53, 567
BfrI	CTTAAG	1 cut(s)	137
BisI	GCNGC	7 cut(s)	6, 148, 189, 192, 195, 339, 446
BlsI	GCNGC	7 cut(s)	7, 149, 190, 193, 196, 340, 447
Bme1390I	CCNGG	6 cut(s)	72, 293, 570, 823, 903, 985
BmgT120I	GGNCC	1 cut(s)	986
BmiI	GGNNCC	2 cut(s)	76, 526
BmrFI	CCNGG	6 cut(s)	72, 293, 570, 823, 903, 985
BmsI	GCATC	7 cut(s)	75, 151, 546, 625, 672, 826, 902
BpmI	CTGGAG	1 cut(s)	1004
Bpu10I	CCTNAGC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	57
BpuMI	CCSGG	2 cut(s)	72, 985
Bsa29I	ATCGAT	1 cut(s)	688
BsaJI	CCNNGG	5 cut(s)	70, 297, 568, 821, 942
BsaXI	ACNNNNNCTCC	6 cut(s)	165, 195, 309, 339, 564, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 431, 1027
Bse118I	RCCGGY	3 cut(s)	341, 383, 871
Bse1I	ACTGG	1 cut(s)	964
Bse3DI	GCAATG	3 cut(s)	39, 526, 960
BseBI	CCWGG	4 cut(s)	293, 570, 823, 903
BseCI	ATCGAT	1 cut(s)	688
BseDI	CCNNGG	5 cut(s)	70, 297, 568, 821, 942
BseGI	GGATG	4 cut(s)	66, 749, 817, 893
BseLI	CCNNNNNNNGG	3 cut(s)	298, 431, 1027
BseMI	GCAATG	3 cut(s)	39, 526, 960
BseMII	CTCAG	3 cut(s)	64, 230, 369
BseNI	ACTGG	1 cut(s)	964
BseRI	GAGGAG	6 cut(s)	16, 19, 22, 186, 189, 491
BseSI	GKGCMC	1 cut(s)	324
BseXI	GCAGC	5 cut(s)	134, 200, 206, 325, 432
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	4 cut(s)	5, 296, 383, 988
BshVI	ATCGAT	1 cut(s)	688
BsiSI	CCGG	7 cut(s)	36, 72, 315, 342, 384, 872, 984
BslI	CCNNNNNNNGG	3 cut(s)	298, 431, 1027
BsmAI	GTCTC	2 cut(s)	53, 567
BsmBI	CGTCTC	2 cut(s)	53, 567
BsnI	GGCC	4 cut(s)	5, 296, 383, 988
Bsp119I	TTCGAA	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	245, 324
Bsp143I	GATC	6 cut(s)	74, 486, 502, 507, 685, 689
BspACI	CCGC	3 cut(s)	6, 64, 191
BspANI	GGCC	4 cut(s)	5, 296, 383, 988
BspCNI	CTCAG	3 cut(s)	63, 231, 370
BspDI	ATCGAT	1 cut(s)	688
BspLI	GGNNCC	2 cut(s)	76, 526
BspPI	GGATC	5 cut(s)	69, 82, 494, 510, 693
BspT104I	TTCGAA	1 cut(s)	57
BspTI	CTTAAG	1 cut(s)	137
BsrDI	GCAATG	3 cut(s)	39, 526, 960
BsrFI	RCCGGY	3 cut(s)	341, 383, 871
BsrI	ACTGG	1 cut(s)	964
BssAI	RCCGGY	3 cut(s)	341, 383, 871
BssECI	CCNNGG	5 cut(s)	70, 297, 568, 821, 942
BssMI	GATC	6 cut(s)	74, 486, 502, 507, 685, 689
BssSI	CACGAG	4 cut(s)	123, 246, 305, 412
BssT1I	CCWWGG	1 cut(s)	942
Bst2BI	CACGAG	4 cut(s)	123, 246, 305, 412
Bst2UI	CCWGG	4 cut(s)	293, 570, 823, 903
Bst4CI	ACNGT	3 cut(s)	155, 277, 732
BstAFI	CTTAAG	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	312, 555
BstDEI	CTNAG	4 cut(s)	50, 239, 378, 801
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	4 cut(s)	66, 749, 817, 893
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	6 cut(s)	77, 489, 505, 510, 688, 692
BstMAI	GTCTC	2 cut(s)	53, 567
BstMBI	GATC	6 cut(s)	74, 486, 502, 507, 685, 689
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 194, 554, 629, 823
BstNI	CCWGG	4 cut(s)	293, 570, 823, 903
BstNSI	RCATGY	2 cut(s)	910, 1011
BstSCI	CCNGG	6 cut(s)	70, 291, 568, 821, 901, 983
BstSLI	GKGCMC	1 cut(s)	324
BstV1I	GCAGC	5 cut(s)	134, 200, 206, 325, 432
BstX2I	RGATCY	1 cut(s)	74
BstXI	CCANNNNNNTGG	2 cut(s)	829, 909
BstYI	RGATCY	1 cut(s)	74
Bsu15I	ATCGAT	1 cut(s)	688
BsuRI	GGCC	4 cut(s)	5, 296, 383, 988
BsuTUI	ATCGAT	1 cut(s)	688
BtgI	CCRYGG	1 cut(s)	297
BtgZI	GCGATG	1 cut(s)	128
BtsCI	GGATG	4 cut(s)	66, 749, 817, 893
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	2 cut(s)	612, 630
Cac8I	GCNNGC	2 cut(s)	312, 555
CaiI	CAGNNNCTG	1 cut(s)	767
CfoI	GCGC	1 cut(s)	450
Cfr10I	RCCGGY	3 cut(s)	341, 383, 871
Cfr13I	GGNCC	1 cut(s)	986
ClaI	ATCGAT	1 cut(s)	688
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	2 cut(s)	907, 1008
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	4 cut(s)	50, 239, 378, 801
DpnI	GATC	6 cut(s)	76, 488, 504, 509, 687, 691
DpnII	GATC	6 cut(s)	74, 486, 502, 507, 685, 689
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	942
Eco24I	GRGCYC	1 cut(s)	245
EcoRII	CCWGG	4 cut(s)	291, 568, 821, 901
EcoT14I	CCWWGG	1 cut(s)	942
EcoT38I	GRGCYC	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	942
Esp3I	CGTCTC	2 cut(s)	53, 567
FaeI	CATG	2 cut(s)	910, 1011
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FatI	CATG	2 cut(s)	906, 1007
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	7 cut(s)	6, 148, 189, 192, 195, 339, 446
FokI	GGATG	4 cut(s)	53, 736, 804, 880
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	7 cut(s)	6, 148, 189, 192, 195, 339, 446
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	7 cut(s)	6, 148, 189, 192, 195, 339, 446
GsuI	CTGGAG	1 cut(s)	1004
HaeIII	GGCC	4 cut(s)	5, 296, 383, 988
HapII	CCGG	7 cut(s)	36, 72, 315, 342, 384, 872, 984
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	2 cut(s)	910, 1011
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HincII	GTYRAC	2 cut(s)	229, 253
HindII	GTYRAC	2 cut(s)	229, 253
HindIII	AAGCTT	1 cut(s)	886
HinfI	GANTC	8 cut(s)	249, 397, 408, 649, 704, 736, 919, 1024
HpaII	CCGG	7 cut(s)	36, 72, 315, 342, 384, 872, 984
HphI	GGTGA	3 cut(s)	193, 356, 616
Hpy166II	GTNNAC	5 cut(s)	229, 253, 347, 420, 772
Hpy188I	TCNGA	5 cut(s)	159, 240, 507, 841, 924
Hpy188III	TCNNGA	6 cut(s)	168, 401, 412, 726, 791, 1021
Hpy8I	GTNNAC	5 cut(s)	229, 253, 347, 420, 772
HpyAV	CCTTC	3 cut(s)	276, 375, 398
HpyCH4III	ACNGT	3 cut(s)	155, 277, 732
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	8 cut(s)	89, 150, 310, 431, 557, 638, 893, 953
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 194, 554, 629, 823
HpyF3I	CTNAG	4 cut(s)	50, 239, 378, 801
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	910, 1011
HspAI	GCGC	1 cut(s)	448
Kzo9I	GATC	6 cut(s)	74, 486, 502, 507, 685, 689
LmnI	GCTCC	4 cut(s)	442, 524, 598, 1023
Lsp1109I	GCAGC	5 cut(s)	134, 200, 206, 325, 432
LweI	GCATC	7 cut(s)	75, 151, 546, 625, 672, 826, 902
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	608, 1000
MalI	GATC	6 cut(s)	76, 488, 504, 509, 687, 691
MboI	GATC	6 cut(s)	74, 486, 502, 507, 685, 689
MboII	GAAGA	1 cut(s)	644
MflI	RGATCY	1 cut(s)	74
MhlI	GDGCHC	2 cut(s)	245, 324
MluCI	AATT	4 cut(s)	79, 456, 585, 861
MlyI	GAGTC	3 cut(s)	258, 913, 1033
MmeI	TCCRAC	2 cut(s)	680, 777
MseI	TTAA	2 cut(s)	138, 390
MslI	CAYNNNNRTG	1 cut(s)	617
MspA1I	CMGCKG	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	7 cut(s)	36, 72, 315, 342, 384, 872, 984
MspR9I	CCNGG	6 cut(s)	72, 293, 570, 823, 903, 985
MvaI	CCWGG	4 cut(s)	293, 570, 823, 903
MwoI	GCNNNNNNNGC	5 cut(s)	127, 194, 554, 629, 823
NciI	CCSGG	2 cut(s)	72, 985
NdeII	GATC	6 cut(s)	74, 486, 502, 507, 685, 689
NlaIII	CATG	2 cut(s)	910, 1011
NlaIV	GGNNCC	2 cut(s)	76, 526
NspI	RCATGY	2 cut(s)	910, 1011
NspV	TTCGAA	1 cut(s)	57
PfeI	GAWTC	5 cut(s)	397, 408, 649, 704, 736
PkrI	GCNGC	7 cut(s)	7, 149, 190, 193, 196, 340, 447
PleI	GAGTC	3 cut(s)	257, 913, 1032
PpsI	GAGTC	3 cut(s)	257, 913, 1032
PshBI	ATTAAT	1 cut(s)	390
PsiI	TTATAA	1 cut(s)	584
Psp6I	CCWGG	4 cut(s)	291, 568, 821, 901
PspGI	CCWGG	4 cut(s)	291, 568, 821, 901
PspN4I	GGNNCC	2 cut(s)	76, 526
PspPI	GGNCC	1 cut(s)	986
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	617
SaqAI	TTAA	2 cut(s)	138, 390
SatI	GCNGC	7 cut(s)	6, 148, 189, 192, 195, 339, 446
Sau3AI	GATC	6 cut(s)	74, 486, 502, 507, 685, 689
Sau96I	GGNCC	1 cut(s)	986
SchI	GAGTC	3 cut(s)	258, 913, 1033
ScrFI	CCNGG	6 cut(s)	72, 293, 570, 823, 903, 985
SduI	GDGCHC	2 cut(s)	245, 324
SfaNI	GCATC	7 cut(s)	75, 151, 546, 625, 672, 826, 902
SfuI	TTCGAA	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	4 cut(s)	79, 456, 585, 861
SsiI	CCGC	3 cut(s)	6, 64, 191
StyD4I	CCNGG	6 cut(s)	70, 291, 568, 821, 901, 983
StyI	CCWWGG	1 cut(s)	942
TaaI	ACNGT	3 cut(s)	155, 277, 732
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	5 cut(s)	57, 331, 357, 688, 702
TasI	AATT	4 cut(s)	79, 456, 585, 861
TauI	GCSGC	2 cut(s)	8, 194
TfiI	GAWTC	5 cut(s)	397, 408, 649, 704, 736
Tru1I	TTAA	2 cut(s)	138, 390
Tru9I	TTAA	2 cut(s)	138, 390
TscAI	CASTG	2 cut(s)	619, 630
TseI	GCWGC	5 cut(s)	147, 188, 194, 338, 445
TspDTI	ATGAA	2 cut(s)	858, 867
TspGWI	ACGGA	4 cut(s)	91, 247, 358, 731
TspRI	CASTG	2 cut(s)	619, 630
Vha464I	CTTAAG	1 cut(s)	137
VspI	ATTAAT	1 cut(s)	390
XceI	RCATGY	2 cut(s)	910, 1011
XcmI	CCANNNNNNNNNTGG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.