Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0013158

Physical Location & Seq

Genomic Coordinates Forward (+)

4863806 .. 4865143

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCCGCCTTTTCCCTCCAGACATCGACCTCCAGCATTGCCCGTCCCAGTTTCGAAACCCGAATCCCCGGATCCGATTTGGGTTCAAACCCAAAATCCATATGTTTCCCTTGTCAGTCTCGTTTGCTTCCTCTCACGTGTCGGAGCAACAGTAAGAGTAGATCAAGAGGAGGAGTTGTGATGGCGGTGGCAGTGACTGGCAATGACCAGTCCCAAGTGGAAGTCGACGTCTCTCTGAGCCCACGAGTCAACTCCGTCAAGCCTTCGAAGACAGTCGCCATTACTGACCAGGCCACGGCTCTCGTGCAAGCCGGAGTGCCCGTCATTCGATTAGCTGCTGGCGAACCCGATTTCGATACCCCTTCCATCATAGCTGAGGCGGGTATCAATGCGATTCGCGAAGGCTTCACCAGGTACACACCAAATGCAGGGACTTTGGAGCTGCGCCAAGCAATTTGTCATAAGCTCAAAGAGGAGAATGGGATCTCTTACACACCGGATCAGATTGTAGTTAGCAATGGAGCCAAGCAGAGCATTGTTCAAGCTGTGCTTGCAGTTTGTTCCCCAGGGGATGAGGTTATAATTCCAGCTCCATTTTGGGTGAGTTACCCTGAAATGGCAAGGATGGCCGATGCAACTCCTGTGATTCTTCCAACGAGCATCTCCAATGATTTTCTCTTAAGCCGGTCCGCCGATCGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004069 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009095 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016769 GO:0019438 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0033853 GO:0033854 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 ko00400 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00350 map00360 map00400 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

235

Amino Acids

24.79

Weight (kDa)

6.59

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22250 AT2G22250 AT2G22250
fragaria_vesca	FvH4_1g21500
malus_domestica	MD01G1024400.v1.1 MD15G1329000.v1.1
prunus_persica	Prupe.6G179700_v2.0.a1
pyrus_communis	pycom01g05210 pycom01g05220 pycom15g29680 pycom15g29690 pycom15g29700
rosa_chinensis	RchiOBHm_Chr2g0115381
rosa_laevigata	RLG00000018181
rosa_multiflora	Rmu_sc0001897.1_g000009
rosa_roxburghii	Rroxscaffold_2G00130870
rosa_rugosa	Rorug02G0196000
rosa_wichuraiana	Rw2G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	581
AatII	GACGTC	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	1 cut(s)	399
AciI	CCGC	4 cut(s)	6, 185, 380, 690
AclWI	GGATC	5 cut(s)	66, 79, 491, 507, 693
AcoI	YGGCCR	2 cut(s)	3, 627
AcvI	CACGTG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	3 cut(s)	295, 428, 616
AflII	CTTAAG	1 cut(s)	679
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	87, 542
AjnI	CCWGG	3 cut(s)	288, 410, 565
AluBI	AGCT	6 cut(s)	335, 374, 442, 466, 545, 590
AluI	AGCT	6 cut(s)	335, 374, 442, 466, 545, 590
Alw26I	GTCTC	2 cut(s)	123, 235
AlwI	GGATC	5 cut(s)	66, 79, 491, 507, 693
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	3 cut(s)	3, 291, 627
ApeKI	GCWGC	2 cut(s)	335, 442
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	687
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	400, 613
AsuII	TTCGAA	2 cut(s)	54, 266
AvaII	GGWCC	1 cut(s)	687
BaeGI	GKGCMC	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	242
BauI	CACGAG	2 cut(s)	243, 302
BbrPI	CACGTG	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	275
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	322, 429
BccI	CCATC	3 cut(s)	175, 374, 619
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	3 cut(s)	290, 412, 567
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	123, 235
BfrI	CTTAAG	1 cut(s)	679
BisI	GCNGC	3 cut(s)	6, 336, 443
BlsI	GCNGC	3 cut(s)	7, 337, 444
Bme1390I	CCNGG	4 cut(s)	69, 290, 412, 567
Bme18I	GGWCC	1 cut(s)	687
BmgT120I	GGNCC	1 cut(s)	687
BmiI	GGNNCC	2 cut(s)	73, 523
BmrFI	CCNGG	4 cut(s)	69, 290, 412, 567
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	622, 669
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	2 cut(s)	54, 266
BpuMI	CCSGG	1 cut(s)	69
Bsa29I	ATCGAT	1 cut(s)	697
BsaAI	YACGTR	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	4 cut(s)	67, 294, 565, 566
BsaWI	WCCGGW	1 cut(s)	496
BsaXI	ACNNNNNCTCC	6 cut(s)	136, 162, 166, 192, 306, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 428, 616
Bse118I	RCCGGY	1 cut(s)	684
Bse1I	ACTGG	3 cut(s)	48, 202, 208
Bse3DI	GCAATG	3 cut(s)	36, 208, 523
BseBI	CCWGG	3 cut(s)	290, 412, 567
BseCI	ATCGAT	1 cut(s)	697
BseDI	CCNNGG	4 cut(s)	67, 294, 565, 566
BseGI	GGATG	2 cut(s)	577, 630
BseLI	CCNNNNNNNGG	3 cut(s)	295, 428, 616
BseMI	GCAATG	3 cut(s)	36, 208, 523
BseMII	CTCAG	2 cut(s)	227, 366
BseNI	ACTGG	3 cut(s)	48, 202, 208
BseRI	GAGGAG	3 cut(s)	183, 186, 488
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	322, 429
Bsh1236I	CGCG	1 cut(s)	399
Bsh1285I	CGRYCG	1 cut(s)	697
BshFI	GGCC	3 cut(s)	5, 293, 629
BshVI	ATCGAT	1 cut(s)	697
BsiEI	CGRYCG	1 cut(s)	697
BsiSI	CCGG	4 cut(s)	69, 312, 497, 685
BslFI	GGGAC	3 cut(s)	30, 196, 445
BslI	CCNNNNNNNGG	3 cut(s)	295, 428, 616
BsmAI	GTCTC	2 cut(s)	123, 235
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	3 cut(s)	30, 196, 445
BsnI	GGCC	3 cut(s)	5, 293, 629
Bsp119I	TTCGAA	2 cut(s)	54, 266
Bsp1286I	GDGCHC	2 cut(s)	242, 321
Bsp143I	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
Bsp68I	TCGCGA	1 cut(s)	399
BspACI	CCGC	4 cut(s)	6, 185, 380, 690
BspANI	GGCC	3 cut(s)	5, 293, 629
BspCNI	CTCAG	2 cut(s)	228, 367
BspDI	ATCGAT	1 cut(s)	697
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	73, 523
BspPI	GGATC	5 cut(s)	66, 79, 491, 507, 693
BspT104I	TTCGAA	2 cut(s)	54, 266
BspTI	CTTAAG	1 cut(s)	679
BsrDI	GCAATG	3 cut(s)	36, 208, 523
BsrFI	RCCGGY	1 cut(s)	684
BsrI	ACTGG	3 cut(s)	48, 202, 208
BssAI	RCCGGY	1 cut(s)	684
BssECI	CCNNGG	4 cut(s)	67, 294, 565, 566
BssMI	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
BssNI	GRCGYC	1 cut(s)	228
BssSI	CACGAG	2 cut(s)	243, 302
Bst2BI	CACGAG	2 cut(s)	243, 302
Bst2UI	CCWGG	3 cut(s)	290, 412, 567
Bst4CI	ACNGT	2 cut(s)	152, 274
BstACI	GRCGYC	1 cut(s)	228
BstAFI	CTTAAG	1 cut(s)	679
BstBAI	YACGTR	1 cut(s)	138
BstBI	TTCGAA	2 cut(s)	54, 266
BstC8I	GCNNGC	3 cut(s)	309, 340, 552
BstDEI	CTNAG	2 cut(s)	236, 375
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	577, 630
BstFNI	CGCG	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	6 cut(s)	74, 164, 486, 502, 697, 701
BstMAI	GTCTC	2 cut(s)	123, 235
BstMBI	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
BstMCI	CGRYCG	1 cut(s)	697
BstMWI	GCNNNNNNNGC	2 cut(s)	551, 626
BstNI	CCWGG	3 cut(s)	290, 412, 567
BstSCI	CCNGG	4 cut(s)	67, 288, 410, 565
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	322, 429
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	2 cut(s)	71, 483
BstYI	RGATCY	2 cut(s)	71, 483
Bsu15I	ATCGAT	1 cut(s)	697
BsuRI	GGCC	3 cut(s)	5, 293, 629
BsuTUI	ATCGAT	1 cut(s)	697
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	577, 630
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
BtuMI	TCGCGA	1 cut(s)	399
Cac8I	GCNNGC	3 cut(s)	309, 340, 552
CaiI	CAGNNNCTG	1 cut(s)	197
CfoI	GCGC	1 cut(s)	447
Cfr10I	RCCGGY	1 cut(s)	684
Cfr13I	GGNCC	1 cut(s)	687
ClaI	ATCGAT	1 cut(s)	697
CpoI	CGGWCCG	1 cut(s)	687
CsiI	ACCWGGT	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	415
CspI	CGGWCCG	1 cut(s)	687
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	2 cut(s)	236, 375
DpnI	GATC	6 cut(s)	73, 163, 485, 501, 696, 700
DpnII	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
EaeI	YGGCCR	2 cut(s)	3, 627
EciI	GGCGGA	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	687
Eco72I	CACGTG	1 cut(s)	138
EcoRII	CCWGG	3 cut(s)	288, 410, 565
EcoT38I	GRGCYC	1 cut(s)	242
Esp3I	CGTCTC	1 cut(s)	235
FaiI	YATR	5 cut(s)	101, 103, 371, 462, 581
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FaqI	GGGAC	3 cut(s)	30, 196, 445
FauI	CCCGC	1 cut(s)	373
FauNDI	CATATG	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	6, 336, 443
FokI	GGATG	2 cut(s)	584, 637
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	3 cut(s)	6, 336, 443
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	3 cut(s)	6, 336, 443
GsuI	CTGGAG	1 cut(s)	16
HaeIII	GGCC	3 cut(s)	5, 293, 629
HapII	CCGG	4 cut(s)	69, 312, 497, 685
HhaI	GCGC	1 cut(s)	447
Hin1I	GRCGYC	1 cut(s)	228
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HincII	GTYRAC	2 cut(s)	226, 250
HindII	GTYRAC	2 cut(s)	226, 250
HinfI	GANTC	4 cut(s)	63, 246, 394, 646
HpaII	CCGG	4 cut(s)	69, 312, 497, 685
HphI	GGTGA	2 cut(s)	400, 613
Hpy166II	GTNNAC	3 cut(s)	226, 250, 417
Hpy188I	TCNGA	4 cut(s)	76, 144, 237, 504
Hpy188III	TCNNGA	3 cut(s)	19, 165, 398
Hpy8I	GTNNAC	3 cut(s)	226, 250, 417
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	273, 372, 395
HpyCH4III	ACNGT	2 cut(s)	152, 274
HpyCH4IV	ACGT	2 cut(s)	137, 228
HpyCH4V	TGCA	4 cut(s)	307, 428, 554, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	551, 626
HpyF3I	CTNAG	2 cut(s)	236, 375
HpySE526I	ACGT	2 cut(s)	137, 228
Hsp92I	GRCGYC	1 cut(s)	228
HspAI	GCGC	1 cut(s)	445
Kzo9I	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
LmnI	GCTCC	4 cut(s)	144, 439, 521, 595
Lsp1109I	GCAGC	2 cut(s)	322, 429
LweI	GCATC	2 cut(s)	622, 669
MabI	ACCWGGT	1 cut(s)	410
MaeII	ACGT	2 cut(s)	137, 228
MaeIII	GTNAC	2 cut(s)	193, 605
MalI	GATC	6 cut(s)	73, 163, 485, 501, 696, 700
MboI	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
MboII	GAAGA	2 cut(s)	280, 641
MflI	RGATCY	2 cut(s)	71, 483
MhlI	GDGCHC	2 cut(s)	242, 321
MluCI	AATT	2 cut(s)	453, 582
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	2 cut(s)	122, 677
MnlI	CCTC	8 cut(s)	26, 40, 141, 161, 164, 370, 466, 568
MseI	TTAA	1 cut(s)	680
MspCI	CTTAAG	1 cut(s)	679
MspI	CCGG	4 cut(s)	69, 312, 497, 685
MspR9I	CCNGG	4 cut(s)	69, 290, 412, 567
MvaI	CCWGG	3 cut(s)	290, 412, 567
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	551, 626
NciI	CCSGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	101
NdeII	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
NlaIV	GGNNCC	2 cut(s)	73, 523
NmuCI	GTSAC	1 cut(s)	193
NruI	TCGCGA	1 cut(s)	399
NspV	TTCGAA	2 cut(s)	54, 266
PasI	CCCWGGG	1 cut(s)	566
PfeI	GAWTC	3 cut(s)	63, 394, 646
PkrI	GCNGC	3 cut(s)	7, 337, 444
Ple19I	CGATCG	1 cut(s)	697
PleI	GAGTC	1 cut(s)	254
PmaCI	CACGTG	1 cut(s)	138
PmlI	CACGTG	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	138
PsiI	TTATAA	1 cut(s)	581
Psp6I	CCWGG	3 cut(s)	288, 410, 565
PspCI	CACGTG	1 cut(s)	138
PspGI	CCWGG	3 cut(s)	288, 410, 565
PspN4I	GGNNCC	2 cut(s)	73, 523
PspPI	GGNCC	1 cut(s)	687
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	71, 483
PvuI	CGATCG	1 cut(s)	697
RruI	TCGCGA	1 cut(s)	399
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
Rsr2I	CGGWCCG	1 cut(s)	687
RsrII	CGGWCCG	1 cut(s)	687
SalI	GTCGAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	680
SatI	GCNGC	3 cut(s)	6, 336, 443
Sau3AI	GATC	6 cut(s)	71, 161, 483, 499, 694, 698
Sau96I	GGNCC	1 cut(s)	687
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	4 cut(s)	69, 290, 412, 567
SduI	GDGCHC	2 cut(s)	242, 321
SexAI	ACCWGGT	1 cut(s)	410
SfaNI	GCATC	2 cut(s)	622, 669
SfuI	TTCGAA	2 cut(s)	54, 266
SinI	GGWCC	1 cut(s)	687
SmlI	CTYRAG	1 cut(s)	679
SmoI	CTYRAG	1 cut(s)	679
Sse9I	AATT	2 cut(s)	453, 582
SsiI	CCGC	4 cut(s)	6, 185, 380, 690
StyD4I	CCNGG	4 cut(s)	67, 288, 410, 565
TaaI	ACNGT	2 cut(s)	152, 274
TaiI	ACGT	2 cut(s)	140, 231
TaqI	TCGA	7 cut(s)	26, 54, 225, 266, 328, 354, 697
TasI	AATT	2 cut(s)	453, 582
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	63, 394, 646
Tru1I	TTAA	1 cut(s)	680
Tru9I	TTAA	1 cut(s)	680
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	2 cut(s)	335, 442
Tsp45I	GTSAC	1 cut(s)	193
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	198
Vha464I	CTTAAG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	594
XmiI	GTMKAC	1 cut(s)	225
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.