Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0013158

Physical Location & Seq

Genomic Coordinates Forward (+)

4865446 .. 4867787

Gene Structure 2342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05220.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTGGGAGAGGACTCTGACAGTCAATGGGTTTTCTAAGGCTTTTGCAATGACTGGTTGGCGACTTGGATATATCGCCGGGCCTAAACACTTTGTTGCGGCTTGTGGAAAGCTCCAGAGTCAGTTCACCTCAGGTGCCTGTAGTATATCACAGAAAGCAGGAGTGGCTGCATTAGGTCTTGGTTTTGCTGGTGGAGAGGCAGTTTCTGTTATGGTGAAAGCATTCCGGGAGCGACGGGATTTCTTGGTCAAAAGCTTTGGCGAACTTTCAGGTGTCAAGATCTCCGAACCCAGGGGAGCTTTCTATCTCTTCATAGATTTCAGCGCTTACTATGGAACAGAGGCTGAAGGATTTGGTAAAATTGAGAATTCAGAGTCACTATGCCGTTACCTACTTGACAGGGGTCAGGTTGCACTAGTACCGGGAGATGCATTTGGAGATGACACGTGCATACGAATCTCCTACGCTGCATCCCTTCCCACCCTACAGGCAGCTGTGGAGAGAATTAAGAAAGCTCTTGTTGAATTGAAGCCTGCGGCCAGTGTTACTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004069 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009095 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016769 GO:0019438 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0033853 GO:0033854 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 ko00400 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00350 map00360 map00400 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

185

Amino Acids

19.74

Weight (kDa)

8.9

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22250 AT2G22250 AT2G22250
fragaria_vesca	FvH4_1g21500
malus_domestica	MD01G1024400.v1.1 MD15G1329000.v1.1
prunus_persica	Prupe.6G179700_v2.0.a1
pyrus_communis	pycom01g05210 pycom01g05220 pycom15g29680 pycom15g29690 pycom15g29700
rosa_chinensis	RchiOBHm_Chr2g0115381
rosa_laevigata	RLG00000018181
rosa_multiflora	Rmu_sc0001897.1_g000009
rosa_roxburghii	Rroxscaffold_2G00130870
rosa_rugosa	Rorug02G0196000
rosa_wichuraiana	Rw2G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	2 cut(s)	98, 536
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	366
AcvI	CACGTG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	420
AfeI	AGCGCT	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	2 cut(s)	524, 529
AhlI	ACTAGT	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	5 cut(s)	112, 255, 299, 494, 515
AluI	AGCT	5 cut(s)	112, 255, 299, 494, 515
AlwNI	CAGNNNCTG	2 cut(s)	206, 344
Aor51HI	AGCGCT	1 cut(s)	325
AoxI	GGCC	2 cut(s)	80, 537
ApeKI	GCWGC	3 cut(s)	167, 467, 491
ApoI	RAATTY	1 cut(s)	367
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	80
AsuC2I	CCSGG	3 cut(s)	79, 227, 423
AsuHPI	GGTGA	2 cut(s)	118, 226
AxyI	CCTNAGG	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	134
BbrPI	CACGTG	1 cut(s)	447
BbvI	GCAGC	3 cut(s)	154, 454, 503
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	292
BcnI	CCSGG	3 cut(s)	79, 227, 423
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	2 cut(s)	139, 485
BfoI	RGCGCY	1 cut(s)	327
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	5 cut(s)	99, 168, 468, 492, 537
BlsI	GCNGC	5 cut(s)	100, 169, 469, 493, 538
Bme1390I	CCNGG	4 cut(s)	79, 227, 292, 423
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	4 cut(s)	79, 227, 292, 423
BmsI	GCATC	2 cut(s)	418, 479
BoxI	GACNNNNGTC	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	98
BpuMI	CCSGG	3 cut(s)	79, 227, 423
BsaAI	YACGTR	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	290, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse1I	ACTGG	2 cut(s)	58, 540
Bse21I	CCTNAGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	2 cut(s)	290, 291
BseGI	GGATG	1 cut(s)	470
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	58, 540
BseXI	GCAGC	3 cut(s)	154, 454, 503
BshFI	GGCC	2 cut(s)	82, 539
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	3 cut(s)	78, 226, 422
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	82, 539
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	2 cut(s)	98, 536
BspANI	GGCC	2 cut(s)	82, 539
BspCNI	CTCAG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	58, 540
BssECI	CCNNGG	2 cut(s)	290, 291
BssMI	GATC	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	2 cut(s)	36, 130
BstF5I	GGATG	1 cut(s)	470
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	292
BstPAI	GACNNNNGTC	1 cut(s)	402
BstSCI	CCNGG	4 cut(s)	77, 225, 290, 421
BstSFI	CTRYAG	2 cut(s)	139, 485
BstV1I	GCAGC	3 cut(s)	154, 454, 503
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	82, 539
BtsCI	GGATG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	534
CaiI	CAGNNNCTG	2 cut(s)	206, 344
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	419
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	2 cut(s)	36, 130
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco47III	AGCGCT	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	366
Eco72I	CACGTG	1 cut(s)	447
Eco81I	CCTNAGG	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	290
EcoT22I	ATGCAT	1 cut(s)	433
FaiI	YATR	7 cut(s)	72, 146, 212, 314, 333, 382, 452
Fnu4HI	GCNGC	5 cut(s)	99, 168, 468, 492, 537
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	5 cut(s)	99, 168, 468, 492, 537
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	5 cut(s)	99, 168, 468, 492, 537
GsuI	CTGGAG	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	82, 539
HapII	CCGG	3 cut(s)	78, 226, 422
HhaI	GCGC	1 cut(s)	326
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	4 cut(s)	13, 118, 374, 456
HpaII	CCGG	3 cut(s)	78, 226, 422
HphI	GGTGA	2 cut(s)	118, 226
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	3 cut(s)	18, 286, 373
Hpy188III	TCNNGA	2 cut(s)	115, 277
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	1 cut(s)	237
HpyAV	CCTTC	2 cut(s)	341, 485
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	6 cut(s)	47, 170, 413, 431, 450, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	2 cut(s)	36, 130
HpySE526I	ACGT	1 cut(s)	446
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	3 cut(s)	117, 229, 296
Lsp1109I	GCAGC	3 cut(s)	154, 454, 503
LweI	GCATC	2 cut(s)	418, 479
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	446
MaeIII	GTNAC	3 cut(s)	375, 386, 544
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	1 cut(s)	301
MflI	RGATCY	1 cut(s)	279
MluCI	AATT	4 cut(s)	360, 367, 504, 524
MlyI	GAGTC	3 cut(s)	7, 127, 383
MnlI	CCTC	4 cut(s)	3, 139, 190, 334
Mph1103I	ATGCAT	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	3 cut(s)	78, 226, 422
MspR9I	CCNGG	4 cut(s)	79, 227, 292, 423
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	3 cut(s)	79, 227, 423
NdeII	GATC	1 cut(s)	279
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	375
NsiI	ATGCAT	1 cut(s)	433
PasI	CCCWGGG	1 cut(s)	291
PctI	GAATGC	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	456
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	5 cut(s)	100, 169, 469, 493, 538
PleI	GAGTC	3 cut(s)	7, 126, 382
PmaCI	CACGTG	1 cut(s)	447
PmlI	CACGTG	1 cut(s)	447
PpsI	GAGTC	3 cut(s)	7, 126, 382
Ppu21I	YACGTR	1 cut(s)	447
PshAI	GACNNNNGTC	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	290
PspCI	CACGTG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	80
PstNI	CAGNNNCTG	2 cut(s)	206, 344
PsuI	RGATCY	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	5 cut(s)	99, 168, 468, 492, 537
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	3 cut(s)	7, 127, 383
ScrFI	CCNGG	4 cut(s)	79, 227, 292, 423
SfaNI	GCATC	2 cut(s)	418, 479
SfcI	CTRYAG	2 cut(s)	139, 485
SpeI	ACTAGT	1 cut(s)	415
Sse9I	AATT	4 cut(s)	360, 367, 504, 524
SsiI	CCGC	2 cut(s)	98, 536
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	4 cut(s)	77, 225, 290, 421
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	449
TasI	AATT	4 cut(s)	360, 367, 504, 524
TauI	GCSGC	2 cut(s)	101, 539
TfiI	GAWTC	1 cut(s)	456
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	1 cut(s)	375
TseI	GCWGC	3 cut(s)	167, 467, 491
Tsp45I	GTSAC	1 cut(s)	375
TspDTI	ATGAA	1 cut(s)	301
TspRI	CASTG	1 cut(s)	547
XapI	RAATTY	1 cut(s)	367
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	1 cut(s)	416
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.