Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013158

Physical Location & Seq

Genomic Coordinates Forward (+)

26652215 .. 26655270

Gene Structure 3056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29690.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCAAGGATGGCCGATGCAACTCCTGTGATTCTTCCAACGAGCATCTCCAATGATTTTCTCTTGGATCCAAAACTTCTCGAATCCAAACTCACGGAGAAGTCAAGACTGTTGATTCTTTGTTCTCCATCCAACCCCACAGGGTCTGTTTACCCCAAGAGTTTGCTTCAAGAGATTGCTAAGATTGTAGCAAAGCATCCCAGGCTTTTGGTTATTTCTGATGAAATATATGAACACATAATTTACGCACCGGCAACTCACACAAGCTTTGCATCCTTGCCAGGCATGTGGGAGAGGACTCTGACAATCAATGGGTTTTCCAAGGCTTTTGCAATGACTGGTTGGCGACTTGGATATATTGCTGGGCCTAAACACTTTGTTACGGCATGTGGAAAGCTCCAGAGTCAGTTCACCTCAGGTGCCAGTAGTATATCACAGAAAGCAGGAGTTGCCGCCTTAGGTCTCGGTTATGCTGGTGGAGAGGCAGTTGCTACTATGGTTAAAGCATTCAGGGAGCGACGGGATTTCTTGGTCAAAAGCTTTGGCGAACTTTCAGGTGTCAGGATTTCAGAACCCAGGGGAGCTTTCTATCTCTTCATAGATTTCAGTGCTTACTATGGAATGGAGGCTAAGGGATTTGGTAAAATTGAGAATTCAGAGTCCTTATGCCGTTACCTACTTGACAAGGGCCAGGTTGCACTAGTACCAGGAGATGCGTTTGGAGATGATACGTGCGTACGAATCTCCTATGCAGCATCCCTTCCCACCCTACAGGCAGCTGTGGAGAGAATTAAGAAAGCACTTGTTGAACTAAAGCCCTCAGTCGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004069 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009095 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016769 GO:0019438 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0033853 GO:0033854 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 ko00400 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00350 map00360 map00400 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

278

Amino Acids

29.97

Weight (kDa)

9.06

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22250 AT2G22250 AT2G22250
fragaria_vesca	FvH4_1g21500
malus_domestica	MD01G1024400.v1.1 MD15G1329000.v1.1
prunus_persica	Prupe.6G179700_v2.0.a1
pyrus_communis	pycom01g05210 pycom01g05220 pycom15g29680 pycom15g29690 pycom15g29700
rosa_chinensis	RchiOBHm_Chr2g0115381
rosa_laevigata	RLG00000018181
rosa_multiflora	Rmu_sc0001897.1_g000009
rosa_roxburghii	Rroxscaffold_2G00130870
rosa_rugosa	Rorug02G0196000
rosa_wichuraiana	Rw2G019870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	419
AciI	CCGC	1 cut(s)	453
AclWI	GGATC	2 cut(s)	62, 75
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	652
AfaI	GTAC	2 cut(s)	705, 738
AfiI	CCNNNNNNNGG	1 cut(s)	824
AgsI	TTSAA	2 cut(s)	170, 809
AhlI	ACTAGT	1 cut(s)	700
AjnI	CCWGG	5 cut(s)	200, 280, 575, 690, 706
AluBI	AGCT	5 cut(s)	267, 397, 540, 584, 779
AluI	AGCT	5 cut(s)	267, 397, 540, 584, 779
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	2 cut(s)	62, 75
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	3 cut(s)	12, 365, 688
ApeKI	GCWGC	2 cut(s)	752, 776
ApoI	RAATTY	1 cut(s)	652
AspS9I	GGNCC	2 cut(s)	365, 688
AsuHPI	GGTGA	1 cut(s)	403
AxyI	CCTNAGG	2 cut(s)	415, 457
BaeI	ACNNNNGTAYC	2 cut(s)	720, 753
BamHI	GGATCC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	764, 788
BccI	CCATC	2 cut(s)	4, 136
BceAI	ACGGC	2 cut(s)	399, 654
BciT130I	CCWGG	5 cut(s)	202, 282, 577, 692, 708
BcoDI	GTCTC	1 cut(s)	467
BcuI	ACTAGT	1 cut(s)	700
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	1 cut(s)	770
BisI	GCNGC	3 cut(s)	453, 753, 777
BlsI	GCNGC	3 cut(s)	454, 754, 778
Bme1390I	CCNGG	5 cut(s)	202, 282, 577, 692, 708
BmgT120I	GGNCC	2 cut(s)	365, 688
BmiI	GGNNCC	2 cut(s)	69, 421
BmrFI	CCNGG	5 cut(s)	202, 282, 577, 692, 708
BmsI	GCATC	6 cut(s)	7, 54, 205, 281, 703, 764
BpmI	CTGGAG	1 cut(s)	383
Bpu10I	CCTNAGC	1 cut(s)	630
BsaAI	YACGTR	1 cut(s)	732
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	4 cut(s)	200, 321, 575, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	824
Bse118I	RCCGGY	1 cut(s)	250
Bse1I	ACTGG	2 cut(s)	343, 423
Bse21I	CCTNAGG	2 cut(s)	415, 457
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	5 cut(s)	202, 282, 577, 692, 708
BseDI	CCNNGG	4 cut(s)	200, 321, 575, 576
BseGI	GGATG	5 cut(s)	15, 128, 196, 272, 755
BseLI	CCNNNNNNNGG	1 cut(s)	824
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	429, 834
BseNI	ACTGG	2 cut(s)	343, 423
BseXI	GCAGC	2 cut(s)	764, 788
BseYI	CCCAGC	1 cut(s)	362
BshFI	GGCC	3 cut(s)	14, 367, 690
BshNI	GGYRCC	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	251
BsiWI	CGTACG	1 cut(s)	736
BslI	CCNNNNNNNGG	1 cut(s)	824
BsmAI	GTCTC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	506
BsnI	GGCC	3 cut(s)	14, 367, 690
Bso31I	GGTCTC	1 cut(s)	467
Bsp143I	GATC	1 cut(s)	67
BspACI	CCGC	1 cut(s)	453
BspANI	GGCC	3 cut(s)	14, 367, 690
BspCNI	CTCAG	2 cut(s)	428, 833
BspLI	GGNNCC	2 cut(s)	69, 421
BspPI	GGATC	2 cut(s)	62, 75
BspT107I	GGYRCC	1 cut(s)	419
BspTNI	GGTCTC	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	339
BsrFI	RCCGGY	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	343, 423
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	4 cut(s)	200, 321, 575, 576
BssMI	GATC	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	5 cut(s)	202, 282, 577, 692, 708
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	599
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	732
BstDEI	CTNAG	5 cut(s)	180, 415, 457, 630, 820
BstF5I	GGATG	5 cut(s)	15, 128, 196, 272, 755
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 202, 449
BstNI	CCWGG	5 cut(s)	202, 282, 577, 692, 708
BstNSI	RCATGY	2 cut(s)	289, 390
BstSCI	CCNGG	5 cut(s)	200, 280, 575, 690, 706
BstSFI	CTRYAG	1 cut(s)	770
BstV1I	GCAGC	2 cut(s)	764, 788
BstX2I	RGATCY	1 cut(s)	67
BstXI	CCANNNNNNTGG	2 cut(s)	208, 288
BstYI	RGATCY	1 cut(s)	67
Bsu36I	CCTNAGG	2 cut(s)	415, 457
BsuRI	GGCC	3 cut(s)	14, 367, 690
BtsCI	GGATG	5 cut(s)	15, 128, 196, 272, 755
BtsIMutI	CAGTG	1 cut(s)	613
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	365, 688
Csp6I	GTAC	2 cut(s)	704, 737
CviAII	CATG	2 cut(s)	286, 387
CviQI	GTAC	2 cut(s)	704, 737
DdeI	CTNAG	5 cut(s)	180, 415, 457, 630, 820
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
Eco130I	CCWWGG	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	467
Eco81I	CCTNAGG	2 cut(s)	415, 457
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	5 cut(s)	200, 280, 575, 690, 706
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	289, 390
FatI	CATG	2 cut(s)	285, 386
Fnu4HI	GCNGC	3 cut(s)	453, 753, 777
FokI	GGATG	5 cut(s)	22, 115, 183, 259, 742
Fsp4HI	GCNGC	3 cut(s)	453, 753, 777
FspBI	CTAG	1 cut(s)	701
GluI	GCNGC	3 cut(s)	453, 753, 777
GsaI	CCCAGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	3 cut(s)	14, 367, 690
HapII	CCGG	1 cut(s)	251
Hin1II	CATG	2 cut(s)	289, 390
HindIII	AAGCTT	2 cut(s)	265, 538
HinfI	GANTC	7 cut(s)	31, 83, 115, 298, 403, 659, 741
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	2 cut(s)	151, 411
Hpy188I	TCNGA	4 cut(s)	220, 303, 571, 658
Hpy188III	TCNNGA	5 cut(s)	80, 105, 170, 400, 562
Hpy8I	GTNNAC	2 cut(s)	151, 411
Hpy99I	CGWCG	1 cut(s)	522
HpyAV	CCTTC	1 cut(s)	770
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4IV	ACGT	1 cut(s)	731
HpyCH4V	TGCA	5 cut(s)	20, 272, 332, 698, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 202, 449
HpyF3I	CTNAG	5 cut(s)	180, 415, 457, 630, 820
HpySE526I	ACGT	1 cut(s)	731
Hsp92II	CATG	2 cut(s)	289, 390
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	3 cut(s)	402, 514, 581
Lsp1109I	GCAGC	2 cut(s)	764, 788
LweI	GCATC	6 cut(s)	7, 54, 205, 281, 703, 764
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	1 cut(s)	731
MaeIII	GTNAC	2 cut(s)	379, 671
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	2 cut(s)	26, 586
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	4 cut(s)	240, 645, 652, 789
MlyI	GAGTC	3 cut(s)	292, 412, 668
MmeI	TCCRAC	2 cut(s)	62, 156
MnlI	CCTC	5 cut(s)	288, 424, 475, 619, 829
MseI	TTAA	3 cut(s)	501, 792, 832
MspA1I	CMGCKG	1 cut(s)	779
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	5 cut(s)	202, 282, 577, 692, 708
Mva1269I	GAATGC	1 cut(s)	506
MvaI	CCWGG	5 cut(s)	202, 282, 577, 692, 708
MwoI	GCNNNNNNNGC	3 cut(s)	11, 202, 449
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	289, 390
NlaIV	GGNNCC	2 cut(s)	69, 421
NspI	RCATGY	2 cut(s)	289, 390
PasI	CCCWGGG	1 cut(s)	576
PctI	GAATGC	1 cut(s)	506
PfeI	GAWTC	4 cut(s)	31, 83, 115, 741
Pfl23II	CGTACG	1 cut(s)	736
PkrI	GCNGC	3 cut(s)	454, 754, 778
PleI	GAGTC	3 cut(s)	292, 411, 667
PpsI	GAGTC	3 cut(s)	292, 411, 667
Ppu21I	YACGTR	1 cut(s)	732
Psp6I	CCWGG	5 cut(s)	200, 280, 575, 690, 706
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	5 cut(s)	200, 280, 575, 690, 706
PspLI	CGTACG	1 cut(s)	736
PspN4I	GGNNCC	2 cut(s)	69, 421
PspPI	GGNCC	2 cut(s)	365, 688
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	779
RsaI	GTAC	2 cut(s)	705, 738
RsaNI	GTAC	2 cut(s)	704, 737
SaqAI	TTAA	3 cut(s)	501, 792, 832
SatI	GCNGC	3 cut(s)	453, 753, 777
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	2 cut(s)	365, 688
SchI	GAGTC	3 cut(s)	292, 412, 668
ScrFI	CCNGG	5 cut(s)	202, 282, 577, 692, 708
SfaNI	GCATC	6 cut(s)	7, 54, 205, 281, 703, 764
SfcI	CTRYAG	1 cut(s)	770
SpeI	ACTAGT	1 cut(s)	700
Sse9I	AATT	4 cut(s)	240, 645, 652, 789
SsiI	CCGC	1 cut(s)	453
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	5 cut(s)	200, 280, 575, 690, 706
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	111
TaiI	ACGT	1 cut(s)	734
TaqI	TCGA	1 cut(s)	81
TasI	AATT	4 cut(s)	240, 645, 652, 789
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	4 cut(s)	31, 83, 115, 741
Tru1I	TTAA	3 cut(s)	501, 792, 832
Tru9I	TTAA	3 cut(s)	501, 792, 832
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	2 cut(s)	752, 776
TspDTI	ATGAA	3 cut(s)	237, 246, 586
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	613
XapI	RAATTY	1 cut(s)	652
XceI	RCATGY	2 cut(s)	289, 390
XspI	CTAG	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.