Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006856

Physical Location & Seq

Genomic Coordinates Forward (+)

9460918 .. 9463561

Gene Structure 2644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGACGAATCCACTTAATTCCACCGCCGCTAATCGCTCTAACCAGCCGTCTTCTGATGGAATCAGCGACGGTCAAATCACCAATGAGGAAGCTGAATCACTAATTAACAAGAAGAACTGTTCAGGGCACAAGCTAAAAGAAGTAACTGATAGTGACACATTCTCTGACAATGGTAAAGATGATTCAGATACCAAGAAAAGATTCCATTACCATCAGGATCAGCGGAGGATGAGTTTGACATCGATTGTGGCGGTGGAGTCTCCTTCATCGAGCAACGCTCCCTCTAGAAAAACCATTGATCTTGGCCATGGAAGCGACCTCATTTACATTCAGAGGTTTCTTCCATTTCAACAATCTTGGACTTTCTTCGATTATCTCGACAAGCATATTCCTTGGACCAGGCCTACTATTCGTGTCTTTGGTCGATCTTGCCTCCAGCCGAGAGATACTTGTTATGTTGCAAGTAGCGGATTGACTGCGTTGGTGTACAGTGGATATCGACCTACCTCCTATTCGTGGGATGATTTCCCACCTCTCAAGGAGATTCTGGATGCTATTTACAAGGTGCTTCCTGGAAGCAGATTCAACAGCTTGCTCTTAAATAGATACAAAGGTGCCAGTGATTATGTGGCTTGGCATGCAGATGATGAAAAGATTTATGGTCCAACTCCAGAAATTGCTTCAGTCTCGTTTGGATGTGAACGTGATTTTGTGTTGAAGAAAAAGAAAGATGAAGAATCTTCCCAAGGGAAAACAGGAGACAGTGGACCAGCTAAGAAGAGGTTAAAGAGAAGCAGCAGAGAGGATCAACAAAGTTTGACATTGAAACATGGATCGTTGCTGGTGATGAGAGGATACACTCAAAGAGACTGGATTCATTCTGTGCCAAAGCGTGCAAAGGCAGAGGGCACTCGTATCAACCTCACATTCAGGCTTGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0008283 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035514 GO:0035515 GO:0035552 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140097 GO:0140098 GO:1901360 GO:1990930

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2 DUF4057

Protein Analysis

314

Amino Acids

35.51

Weight (kDa)

9.17

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4057	PF13266	7 - 70	1.4e-12	Protein of unknown function (DUF4057)
2OG-FeII_Oxy_2	PF13532	107 - 311	2e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260
fragaria_vesca	FvH4_3g00300
malus_domestica	MD10G1339500.v1.1
prunus_persica	Prupe.4G003400_v2.0.a1 Prupe.4G003400_v2.0.a1
pyrus_communis	pycom10g28930
rosa_chinensis	RchiOBHm_Chr5g0000451
rosa_laevigata	RLG00000030868
rosa_multiflora	Rmu_sc0001680.1_g000001 Rmu_sc0003949.1_g000005 Rmu_sc0022667.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075710
rosa_rugosa	Rorug04G0383700
rosa_samantha	Rh5AG003700 Rh5BG004900 Rh5CG004000 Rh5DG003800
rosa_wichuraiana	Rw5G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	614
AciI	CCGC	5 cut(s)	24, 27, 223, 251, 468
AclWI	GGATC	3 cut(s)	225, 813, 841
AcoI	YGGCCR	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	666
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	516
AgsI	TTSAA	4 cut(s)	350, 586, 718, 826
AjnI	CCWGG	2 cut(s)	398, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	4 cut(s)	92, 133, 591, 773
AluI	AGCT	4 cut(s)	92, 133, 591, 773
Alw26I	GTCTC	4 cut(s)	264, 691, 753, 861
AlwI	GGATC	3 cut(s)	225, 813, 841
AoxI	GGCC	2 cut(s)	304, 401
ApeKI	GCWGC	1 cut(s)	795
Asp700I	GAANNNNTTC	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	396, 662, 767
AsuHPI	GGTGA	2 cut(s)	70, 856
AvaII	GGWCC	3 cut(s)	396, 662, 767
BaeGI	GKGCMC	2 cut(s)	129, 911
BaeI	ACNNNNGTAYC	2 cut(s)	598, 631
BalI	TGGCCA	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	614
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	807
BccI	CCATC	2 cut(s)	50, 219
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	400, 573
BciVI	GTATCC	1 cut(s)	848
BcoDI	GTCTC	4 cut(s)	264, 691, 753, 861
BfaI	CTAG	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	848
BisI	GCNGC	2 cut(s)	27, 796
BlsI	GCNGC	2 cut(s)	28, 797
Bme1390I	CCNGG	2 cut(s)	400, 573
Bme18I	GGWCC	3 cut(s)	396, 662, 767
BmgT120I	GGNCC	3 cut(s)	396, 662, 767
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	2 cut(s)	400, 573
BmsI	GCATC	1 cut(s)	541
BpiI	GAAGAC	1 cut(s)	42
BplI	GAGNNNNNCTC	2 cut(s)	262, 294
BpmI	CTGGAG	2 cut(s)	419, 654
BpuEI	CTTGAG	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	242
BsaJI	CCNNGG	3 cut(s)	307, 392, 745
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
Bse1I	ACTGG	2 cut(s)	618, 875
BseBI	CCWGG	2 cut(s)	400, 573
BseCI	ATCGAT	1 cut(s)	242
BseDI	CCNNGG	3 cut(s)	307, 392, 745
BseGI	GGATG	4 cut(s)	234, 526, 556, 701
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseNI	ACTGG	2 cut(s)	618, 875
BseSI	GKGCMC	2 cut(s)	129, 911
BseXI	GCAGC	1 cut(s)	807
BshFI	GGCC	2 cut(s)	306, 403
BshNI	GGYRCC	1 cut(s)	614
BshVI	ATCGAT	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	516
BsmAI	GTCTC	4 cut(s)	264, 691, 753, 861
BsnI	GGCC	2 cut(s)	306, 403
Bsp1286I	GDGCHC	2 cut(s)	129, 911
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	5 cut(s)	217, 298, 425, 805, 833
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	5 cut(s)	24, 27, 223, 251, 468
BspANI	GGCC	2 cut(s)	306, 403
BspDI	ATCGAT	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	616
BspPI	GGATC	3 cut(s)	225, 813, 841
BspT107I	GGYRCC	1 cut(s)	614
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	618, 875
BssECI	CCNNGG	3 cut(s)	307, 392, 745
BssMI	GATC	5 cut(s)	217, 298, 425, 805, 833
BssT1I	CCWWGG	3 cut(s)	307, 392, 745
Bst2UI	CCWGG	2 cut(s)	400, 573
Bst4CI	ACNGT	4 cut(s)	71, 119, 491, 764
Bst6I	CTCTTC	1 cut(s)	773
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	3 cut(s)	593, 639, 894
BstDEI	CTNAG	1 cut(s)	774
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	4 cut(s)	234, 526, 556, 701
BstKTI	GATC	5 cut(s)	220, 301, 428, 808, 836
BstMAI	GTCTC	4 cut(s)	264, 691, 753, 861
BstMBI	GATC	5 cut(s)	217, 298, 425, 805, 833
BstMWI	GCNNNNNNNGC	2 cut(s)	312, 638
BstNI	CCWGG	2 cut(s)	400, 573
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	2 cut(s)	398, 571
BstSLI	GKGCMC	2 cut(s)	129, 911
BstV1I	GCAGC	1 cut(s)	807
BstV2I	GAAGAC	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	242
BsuI	GTATCC	1 cut(s)	848
BsuRI	GGCC	2 cut(s)	306, 403
BsuTUI	ATCGAT	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	4 cut(s)	234, 526, 556, 701
BtsIMutI	CAGTG	3 cut(s)	496, 625, 769
Cac8I	GCNNGC	3 cut(s)	593, 639, 894
Cfr13I	GGNCC	3 cut(s)	396, 662, 767
ClaI	ATCGAT	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	3 cut(s)	308, 638, 830
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	1 cut(s)	774
DpnI	GATC	5 cut(s)	219, 300, 427, 807, 835
DpnII	GATC	5 cut(s)	217, 298, 425, 805, 833
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	773
EarI	CTCTTC	1 cut(s)	773
Eco130I	CCWWGG	3 cut(s)	307, 392, 745
Eco147I	AGGCCT	1 cut(s)	403
Eco32I	GATATC	1 cut(s)	497
Eco47I	GGWCC	3 cut(s)	396, 662, 767
Eco57I	CTGAAG	1 cut(s)	666
EcoRII	CCWGG	2 cut(s)	398, 571
EcoRV	GATATC	1 cut(s)	497
EcoT14I	CCWWGG	3 cut(s)	307, 392, 745
ErhI	CCWWGG	3 cut(s)	307, 392, 745
FaeI	CATG	3 cut(s)	311, 641, 833
FaiI	YATR	7 cut(s)	309, 387, 456, 627, 639, 660, 831
FatI	CATG	3 cut(s)	307, 637, 829
Fnu4HI	GCNGC	2 cut(s)	27, 796
FokI	GGATG	4 cut(s)	241, 533, 563, 708
Fsp4HI	GCNGC	2 cut(s)	27, 796
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	2 cut(s)	27, 796
GsuI	CTGGAG	2 cut(s)	419, 654
HaeIII	GGCC	2 cut(s)	306, 403
Hin1II	CATG	3 cut(s)	311, 641, 833
HphI	GGTGA	2 cut(s)	70, 856
Hpy166II	GTNNAC	3 cut(s)	487, 701, 767
Hpy188I	TCNGA	4 cut(s)	55, 166, 187, 333
Hpy188III	TCNNGA	5 cut(s)	215, 285, 377, 548, 671
Hpy8I	GTNNAC	3 cut(s)	487, 701, 767
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	4 cut(s)	71, 119, 491, 764
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	3 cut(s)	461, 641, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	312, 638
HpyF3I	CTNAG	1 cut(s)	774
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	3 cut(s)	311, 641, 833
Kzo9I	GATC	5 cut(s)	217, 298, 425, 805, 833
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	1 cut(s)	807
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	2 cut(s)	142, 152
MalI	GATC	5 cut(s)	219, 300, 427, 807, 835
MboI	GATC	5 cut(s)	217, 298, 425, 805, 833
MboII	GAAGA	8 cut(s)	42, 124, 332, 358, 730, 732, 746, 790
MhlI	GDGCHC	2 cut(s)	129, 911
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	3 cut(s)	16, 102, 675
MluNI	TGGCCA	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	689
Mox20I	TGGCCA	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	4 cut(s)	15, 105, 599, 785
MslI	CAYNNNNRTG	1 cut(s)	642
Msp20I	TGGCCA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	223
MspR9I	CCNGG	2 cut(s)	400, 573
MvaI	CCWGG	2 cut(s)	400, 573
MwoI	GCNNNNNNNGC	2 cut(s)	312, 638
NcoI	CCATGG	1 cut(s)	307
NdeII	GATC	5 cut(s)	217, 298, 425, 805, 833
NlaIII	CATG	3 cut(s)	311, 641, 833
NlaIV	GGNNCC	1 cut(s)	616
NmeAIII	GCCGAG	1 cut(s)	465
NmuCI	GTSAC	1 cut(s)	152
NspI	RCATGY	1 cut(s)	641
PaeI	GCATGC	1 cut(s)	641
PceI	AGGCCT	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	9 cut(s)	7, 60, 95, 182, 201, 544, 582, 737, 874
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	2 cut(s)	28, 797
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	398, 571
PspGI	CCWGG	2 cut(s)	398, 571
PspN4I	GGNNCC	1 cut(s)	616
PspPI	GGNCC	3 cut(s)	396, 662, 767
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	642
SaqAI	TTAA	4 cut(s)	15, 105, 599, 785
SatI	GCNGC	2 cut(s)	27, 796
Sau3AI	GATC	5 cut(s)	217, 298, 425, 805, 833
Sau96I	GGNCC	3 cut(s)	396, 662, 767
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	400, 573
SduI	GDGCHC	2 cut(s)	129, 911
SfaNI	GCATC	1 cut(s)	541
SinI	GGWCC	3 cut(s)	396, 662, 767
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SphI	GCATGC	1 cut(s)	641
Sse9I	AATT	3 cut(s)	16, 102, 675
SseBI	AGGCCT	1 cut(s)	403
SsiI	CCGC	5 cut(s)	24, 27, 223, 251, 468
SspMI	CTAG	1 cut(s)	285
StuI	AGGCCT	1 cut(s)	403
StyD4I	CCNGG	2 cut(s)	398, 571
StyI	CCWWGG	3 cut(s)	307, 392, 745
TaaI	ACNGT	4 cut(s)	71, 119, 491, 764
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	6 cut(s)	242, 269, 369, 378, 424, 499
TasI	AATT	3 cut(s)	16, 102, 675
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	9 cut(s)	7, 60, 95, 182, 201, 544, 582, 737, 874
Tru1I	TTAA	4 cut(s)	15, 105, 599, 785
Tru9I	TTAA	4 cut(s)	15, 105, 599, 785
TscAI	CASTG	3 cut(s)	496, 625, 769
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	795
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	4 cut(s)	255, 663, 747, 866
TspRI	CASTG	3 cut(s)	496, 625, 769
VpaK11BI	GGWCC	3 cut(s)	396, 662, 767
XbaI	TCTAGA	1 cut(s)	284
XceI	RCATGY	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.