Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006856

Physical Location & Seq

Genomic Coordinates Reverse (-)

313848 .. 315881

Gene Structure 2034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G000370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAGTTTGAGGAAGCTGGTGGTGACGAAAGCAAACCCTAATTGTAATTGTAATGAAAGTGAGGATGAGGATGGTAAGGCGAAGAGAGAGACGAGGGTGGCTCTGGGCAACGGAAGCGAGGTGGTGTTGATTCCAAGGTTCATAAGCTTCGATCGGGCTTGGAATTGGTTCGATTACCTCAATACACATGTTCCCTGGACCAGACCCACTATTCGTGTCTTCGGCCGATCCTGCCTCCAGCCTAGAGATACATGTTATGTTGCAAGTCCGGGACTACCACAATTGGTTTACAGTGGATACAAACCTCATGCTTATTCATGGGATGATCTCCCTCCTCTTAAGGAACTCTTGGAAGCGGTCCATAAAGCTCTTCCTGGCAGCAGTTTCAATAGCTTGATCTTAAATAGGTATAAAGGTGGTAATGACTATGTTGCTTGGCATTCTGATGATGAAAAGGTTTATGGTTCGACTCCTGAAATTGCGTCCCTGTCCTTTGGATGTGAAAGGGAATTCTACTTGAAGAAGAAACCCGGTAAAACATCTCAAGAAAGAAAAAGTGATCAAGAAGCTACAAGTAAGCGATTAAAGAGGAATCATGATGATCAGCACTCTTTCATGCTTAAGCATGGATCGCTCTTGGTGATGAGAGGTTATACTCAAAGGGATTGGATGCACTCTGTGCCTAAGCGGACAAAATTAGAGGCTACTCGTATCAACCTCACCTTCAGCAGTCTTAGAAAAGATTACGTTTCAGCTCAAATCTTTTCCTTGCCCAAGCCAGCCGGCTCTGATGCCAGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0008283 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360 GO:1990930

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

267

Amino Acids

30.6

Weight (kDa)

9.38

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	41 - 242	1.1e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260
fragaria_vesca	FvH4_3g00300
malus_domestica	MD10G1339500.v1.1
prunus_persica	Prupe.4G003400_v2.0.a1 Prupe.4G003400_v2.0.a1
pyrus_communis	pycom10g28930
rosa_chinensis	RchiOBHm_Chr5g0000451
rosa_laevigata	RLG00000030868
rosa_multiflora	Rmu_sc0001680.1_g000001 Rmu_sc0003949.1_g000005 Rmu_sc0022667.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075710
rosa_rugosa	Rorug04G0383700
rosa_samantha	Rh5AG003700 Rh5BG004900 Rh5CG004000 Rh5DG003800
rosa_wichuraiana	Rw5G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	356, 688
AclWI	GGATC	2 cut(s)	222, 637
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	1 cut(s)	709
AdeI	CACNNNGTG	1 cut(s)	679
AflII	CTTAAG	2 cut(s)	338, 620
AflIII	ACRYGT	2 cut(s)	187, 251
AgsI	TTSAA	2 cut(s)	388, 520
AjnI	CCWGG	2 cut(s)	194, 373
AluBI	AGCT	6 cut(s)	16, 147, 368, 393, 569, 755
AluI	AGCT	6 cut(s)	16, 147, 368, 393, 569, 755
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	222, 637
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	1 cut(s)	509
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	198, 358
AsuC2I	CCSGG	2 cut(s)	270, 531
AsuHPI	GGTGA	3 cut(s)	34, 652, 712
AvaII	GGWCC	2 cut(s)	198, 358
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	1 cut(s)	65
BciT130I	CCWGG	2 cut(s)	196, 375
BciVI	GTATCC	1 cut(s)	290
BclI	TGATCA	2 cut(s)	559, 601
BcnI	CCSGG	2 cut(s)	270, 531
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	243
BfrI	CTTAAG	2 cut(s)	338, 620
BfuI	GTATCC	1 cut(s)	290
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	4 cut(s)	196, 270, 375, 531
Bme18I	GGWCC	2 cut(s)	198, 358
BmgT120I	GGNCC	2 cut(s)	198, 358
BmrFI	CCNGG	4 cut(s)	196, 270, 375, 531
BmsI	GCATC	2 cut(s)	660, 781
BpiI	GAAGAC	1 cut(s)	211
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	528
BpuMI	CCSGG	2 cut(s)	270, 531
BsaJI	CCNNGG	2 cut(s)	134, 194
Bse118I	RCCGGY	1 cut(s)	782
BseBI	CCWGG	2 cut(s)	196, 375
BseDI	CCNNGG	2 cut(s)	134, 194
BseGI	GGATG	5 cut(s)	70, 76, 328, 503, 675
BseRI	GAGGAG	1 cut(s)	324
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	390
Bsh1285I	CGRYCG	2 cut(s)	154, 226
BshFI	GGCC	1 cut(s)	225
BsiEI	CGRYCG	2 cut(s)	154, 226
BsiSI	CCGG	3 cut(s)	269, 531, 783
BslFI	GGGAC	2 cut(s)	285, 469
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	285, 469
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	225
Bsp143I	GATC	7 cut(s)	151, 227, 325, 396, 559, 601, 629
BspACI	CCGC	2 cut(s)	356, 688
BspANI	GGCC	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	595
BspPI	GGATC	2 cut(s)	222, 637
BspQI	GCTCTTC	1 cut(s)	375
BspTI	CTTAAG	2 cut(s)	338, 620
BsrFI	RCCGGY	1 cut(s)	782
BssAI	RCCGGY	1 cut(s)	782
BssECI	CCNNGG	2 cut(s)	134, 194
BssMI	GATC	7 cut(s)	151, 227, 325, 396, 559, 601, 629
BssT1I	CCWWGG	1 cut(s)	134
Bst2UI	CCWGG	2 cut(s)	196, 375
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	2 cut(s)	77, 375
BstAFI	CTTAAG	2 cut(s)	338, 620
BstAPI	GCANNNNNTGC	1 cut(s)	679
BstC8I	GCNNGC	2 cut(s)	780, 784
BstDEI	CTNAG	2 cut(s)	684, 734
BstF5I	GGATG	5 cut(s)	70, 76, 328, 503, 675
BstKTI	GATC	7 cut(s)	154, 230, 328, 399, 562, 604, 632
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	7 cut(s)	151, 227, 325, 396, 559, 601, 629
BstMCI	CGRYCG	2 cut(s)	154, 226
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 231, 631, 679
BstNI	CCWGG	2 cut(s)	196, 375
BstNSI	RCATGY	2 cut(s)	191, 255
BstSCI	CCNGG	4 cut(s)	194, 268, 373, 529
BstV1I	GCAGC	1 cut(s)	390
BstV2I	GAAGAC	1 cut(s)	211
BstZI	CGGCCG	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	5 cut(s)	70, 76, 328, 503, 675
BtsIMutI	CAGTG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	780, 784
CciI	TCATGA	1 cut(s)	595
Cfr10I	RCCGGY	1 cut(s)	782
Cfr13I	GGNCC	2 cut(s)	198, 358
CseI	GACGC	1 cut(s)	471
CviAII	CATG	7 cut(s)	188, 252, 308, 318, 596, 616, 626
DdeI	CTNAG	2 cut(s)	684, 734
DpnI	GATC	7 cut(s)	153, 229, 327, 398, 561, 603, 631
DpnII	GATC	7 cut(s)	151, 227, 325, 396, 559, 601, 629
DraIII	CACNNNGTG	1 cut(s)	679
EaeI	YGGCCR	1 cut(s)	223
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	77, 375
EarI	CTCTTC	2 cut(s)	77, 375
EclXI	CGGCCG	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	134
Eco47I	GGWCC	2 cut(s)	198, 358
Eco52I	CGGCCG	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	709
EcoRI	GAATTC	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	194, 373
EcoT14I	CCWWGG	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	134
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	7 cut(s)	191, 255, 311, 321, 599, 619, 629
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	2 cut(s)	285, 469
FatI	CATG	7 cut(s)	187, 251, 307, 317, 595, 615, 625
FbaI	TGATCA	2 cut(s)	559, 601
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	5 cut(s)	77, 83, 335, 510, 682
Fsp4HI	GCNGC	1 cut(s)	379
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	3 cut(s)	269, 531, 783
HgaI	GACGC	1 cut(s)	471
Hin1II	CATG	7 cut(s)	191, 255, 311, 321, 599, 619, 629
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	3 cut(s)	130, 469, 592
HpaII	CCGG	3 cut(s)	269, 531, 783
HphI	GGTGA	3 cut(s)	34, 652, 712
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	445, 790
Hpy188III	TCNNGA	4 cut(s)	473, 545, 563, 596
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	733
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	2 cut(s)	263, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 231, 631, 679
HpyF3I	CTNAG	2 cut(s)	684, 734
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	7 cut(s)	191, 255, 311, 321, 599, 619, 629
KroI	GCCGGC	1 cut(s)	782
KroNI	GCCGGC	1 cut(s)	784
Ksp22I	TGATCA	2 cut(s)	559, 601
Kzo9I	GATC	7 cut(s)	151, 227, 325, 396, 559, 601, 629
LguI	GCTCTTC	1 cut(s)	375
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	2 cut(s)	660, 781
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	7 cut(s)	153, 229, 327, 398, 561, 603, 631
MboI	GATC	7 cut(s)	151, 227, 325, 396, 559, 601, 629
MboII	GAAGA	5 cut(s)	94, 211, 362, 532, 535
MfeI	CAATTG	1 cut(s)	281
MluCI	AATT	7 cut(s)	40, 46, 163, 281, 477, 509, 695
MlyI	GAGTC	1 cut(s)	463
MroNI	GCCGGC	1 cut(s)	782
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	4 cut(s)	339, 401, 584, 621
MslI	CAYNNNNRTG	1 cut(s)	444
MspCI	CTTAAG	2 cut(s)	338, 620
MspI	CCGG	3 cut(s)	269, 531, 783
MspR9I	CCNGG	4 cut(s)	196, 270, 375, 531
MunI	CAATTG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	2 cut(s)	196, 375
MwoI	GCNNNNNNNGC	4 cut(s)	114, 231, 631, 679
NaeI	GCCGGC	1 cut(s)	784
NciI	CCSGG	2 cut(s)	270, 531
NdeII	GATC	7 cut(s)	151, 227, 325, 396, 559, 601, 629
NgoMIV	GCCGGC	1 cut(s)	782
NlaIII	CATG	7 cut(s)	191, 255, 311, 321, 599, 619, 629
NmuCI	GTSAC	1 cut(s)	22
NspI	RCATGY	2 cut(s)	191, 255
PagI	TCATGA	1 cut(s)	595
PciI	ACATGT	2 cut(s)	187, 251
PciSI	GCTCTTC	1 cut(s)	375
PctI	GAATGC	1 cut(s)	439
PdiI	GCCGGC	1 cut(s)	784
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	130, 592
PfoI	TCCNGGA	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	380
Ple19I	CGATCG	1 cut(s)	154
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PscI	ACATGT	2 cut(s)	187, 251
Psp6I	CCWGG	2 cut(s)	194, 373
PspGI	CCWGG	2 cut(s)	194, 373
PspPI	GGNCC	2 cut(s)	198, 358
PvuI	CGATCG	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	4 cut(s)	339, 401, 584, 621
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	7 cut(s)	151, 227, 325, 396, 559, 601, 629
Sau96I	GGNCC	2 cut(s)	198, 358
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	4 cut(s)	196, 270, 375, 531
SfaNI	GCATC	2 cut(s)	660, 781
SinI	GGWCC	2 cut(s)	198, 358
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	3 cut(s)	338, 543, 620
SmoI	CTYRAG	3 cut(s)	338, 543, 620
Sse9I	AATT	7 cut(s)	40, 46, 163, 281, 477, 509, 695
SsiI	CCGC	2 cut(s)	356, 688
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	4 cut(s)	194, 268, 373, 529
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	3 cut(s)	150, 171, 467
TasI	AATT	7 cut(s)	40, 46, 163, 281, 477, 509, 695
TfiI	GAWTC	2 cut(s)	130, 592
Tru1I	TTAA	4 cut(s)	339, 401, 584, 621
Tru9I	TTAA	4 cut(s)	339, 401, 584, 621
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	5 cut(s)	69, 130, 306, 465, 604
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	298
Vha464I	CTTAAG	2 cut(s)	338, 620
VpaK11BI	GGWCC	2 cut(s)	198, 358
XapI	RAATTY	1 cut(s)	509
XceI	RCATGY	2 cut(s)	191, 255
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.