Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006856

Physical Location & Seq

Genomic Coordinates Reverse (-)

277275 .. 278646

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG003800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAGTTTGAGGAAGTTGGTGGTGACGAAAGCAAACCCTAATTGTAATTGTAATGAAAGTGAGGATGAGGATGAGGATGAGGATGGTAAGGCGAAGAGAGAGACGAGGGTGGCTCTGGGCAACGGAAGCGAGGTGGTGTTGATTCCAAGGTTCATAAGCTTCGATCGGGCTTGGAATTGGTTCGATTACCTCAACACCCATGTTCCTTGGACCAGACCCACTATTCGTGTCTTCGGCCGATCCTGCCTCCAGCCTAGAGATACATGTTATGTTGCAAGTCCGGGACTACCACAATTGGTTTACAGTGGATACCAACGTCATGCTTATTCATGGGATGATCTCCCTCCTCTTAAGGAACTCTTGGAAGCGGTCCATAAAGCTCTTCCTGCCAGCAGTTTCAATAGCTTGCTCTTAAATAGGTATAAGGGTGGTAATGACTATGTTGCTTGGCATTCTGATGATGAAAAGGTTTATGGTTCAACTCCTGAAATTGCGTCCCTATCCTTTGGATGCGAAAGGGAATTCTACTTGAAGAAGAAACCCGGTAAAACATCTCAAGAAAGAAAAAGTGATCAAGAAACTACAAGTAAGCGATTAAAGAGGAATCATGATGATCAGCACTCTTTCATGCTTAAGCATGGATCGCTCTTGGTGATGAGAGGTTATACTCAAAGGGATTGGATGCACTCTGTGCCTAAGCGGACAAAATTAGAGGCCACTCGTATCAACCTCACCTTCAGGCATGTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0008283 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360 GO:1990930

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

250

Amino Acids

28.95

Weight (kDa)

8.99

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	45 - 247	8e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260
fragaria_vesca	FvH4_3g00300
malus_domestica	MD10G1339500.v1.1
prunus_persica	Prupe.4G003400_v2.0.a1 Prupe.4G003400_v2.0.a1
pyrus_communis	pycom10g28930
rosa_chinensis	RchiOBHm_Chr5g0000451
rosa_laevigata	RLG00000030868
rosa_multiflora	Rmu_sc0001680.1_g000001 Rmu_sc0003949.1_g000005 Rmu_sc0022667.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075710
rosa_rugosa	Rorug04G0383700
rosa_samantha	Rh5AG003700 Rh5BG004900 Rh5CG004000 Rh5DG003800
rosa_wichuraiana	Rw5G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	368, 700
AclWI	GGATC	2 cut(s)	234, 649
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	721
AdeI	CACNNNGTG	1 cut(s)	691
AflII	CTTAAG	2 cut(s)	350, 632
AflIII	ACRYGT	1 cut(s)	263
AgsI	TTSAA	3 cut(s)	400, 480, 532
AluBI	AGCT	3 cut(s)	159, 380, 405
AluI	AGCT	3 cut(s)	159, 380, 405
Alw21I	GWGCWC	1 cut(s)	750
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	2 cut(s)	234, 649
AoxI	GGCC	2 cut(s)	235, 714
ApoI	RAATTY	1 cut(s)	521
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	210, 370
AsuC2I	CCSGG	2 cut(s)	282, 543
AsuHPI	GGTGA	3 cut(s)	34, 664, 724
AvaII	GGWCC	2 cut(s)	210, 370
BaeI	ACNNNNGTAYC	2 cut(s)	301, 334
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	750
BccI	CCATC	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	302
BclI	TGATCA	2 cut(s)	571, 613
BcnI	CCSGG	2 cut(s)	282, 543
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	255
BfrI	CTTAAG	2 cut(s)	350, 632
BfuI	GTATCC	1 cut(s)	302
Bme1390I	CCNGG	2 cut(s)	282, 543
Bme18I	GGWCC	2 cut(s)	210, 370
BmgT120I	GGNCC	2 cut(s)	210, 370
BmrFI	CCNGG	2 cut(s)	282, 543
BmsI	GCATC	2 cut(s)	500, 672
BpiI	GAAGAC	1 cut(s)	223
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
BpmI	CTGGAG	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	540
BpuMI	CCSGG	2 cut(s)	282, 543
BsaJI	CCNNGG	2 cut(s)	146, 206
BseDI	CCNNGG	2 cut(s)	146, 206
BseGI	GGATG	7 cut(s)	70, 76, 82, 88, 340, 515, 687
BseRI	GAGGAG	1 cut(s)	336
BseX3I	CGGCCG	1 cut(s)	235
Bsh1285I	CGRYCG	2 cut(s)	166, 238
BshFI	GGCC	2 cut(s)	237, 716
BsiEI	CGRYCG	2 cut(s)	166, 238
BsiHKAI	GWGCWC	1 cut(s)	750
BsiSI	CCGG	2 cut(s)	281, 543
BslFI	GGGAC	2 cut(s)	297, 481
BsmAI	GTCTC	1 cut(s)	95
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	297, 481
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	237, 716
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	6 cut(s)	163, 239, 337, 571, 613, 641
BspACI	CCGC	2 cut(s)	368, 700
BspANI	GGCC	2 cut(s)	237, 716
BspHI	TCATGA	1 cut(s)	607
BspPI	GGATC	2 cut(s)	234, 649
BspQI	GCTCTTC	1 cut(s)	387
BspTI	CTTAAG	2 cut(s)	350, 632
BssECI	CCNNGG	2 cut(s)	146, 206
BssMI	GATC	6 cut(s)	163, 239, 337, 571, 613, 641
BssT1I	CCWWGG	2 cut(s)	146, 206
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	2 cut(s)	89, 387
BstAFI	CTTAAG	2 cut(s)	350, 632
BstAPI	GCANNNNNTGC	1 cut(s)	691
BstC8I	GCNNGC	2 cut(s)	391, 407
BstDEI	CTNAG	1 cut(s)	696
BstF5I	GGATG	7 cut(s)	70, 76, 82, 88, 340, 515, 687
BstKTI	GATC	6 cut(s)	166, 242, 340, 574, 616, 644
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	6 cut(s)	163, 239, 337, 571, 613, 641
BstMCI	CGRYCG	2 cut(s)	166, 238
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 243, 386, 643, 691
BstNSI	RCATGY	2 cut(s)	267, 746
BstSCI	CCNGG	2 cut(s)	280, 541
BstV2I	GAAGAC	1 cut(s)	223
BstZI	CGGCCG	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	237, 716
BtsCI	GGATG	7 cut(s)	70, 76, 82, 88, 340, 515, 687
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	2 cut(s)	391, 407
CciI	TCATGA	1 cut(s)	607
Cfr13I	GGNCC	2 cut(s)	210, 370
CseI	GACGC	1 cut(s)	483
CviAII	CATG	8 cut(s)	200, 264, 320, 330, 608, 628, 638, 743
CviJI	RGCY	8 cut(s)	113, 159, 170, 237, 253, 380, 405, 716
CviKI_1	RGCY	8 cut(s)	113, 159, 170, 237, 253, 380, 405, 716
DdeI	CTNAG	1 cut(s)	696
DpnI	GATC	6 cut(s)	165, 241, 339, 573, 615, 643
DpnII	GATC	6 cut(s)	163, 239, 337, 571, 613, 641
DraIII	CACNNNGTG	1 cut(s)	691
EaeI	YGGCCR	1 cut(s)	235
EagI	CGGCCG	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	89, 387
EarI	CTCTTC	2 cut(s)	89, 387
EclXI	CGGCCG	1 cut(s)	235
Eco130I	CCWWGG	2 cut(s)	146, 206
Eco47I	GGWCC	2 cut(s)	210, 370
Eco52I	CGGCCG	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	721
EcoRI	GAATTC	1 cut(s)	521
EcoT14I	CCWWGG	2 cut(s)	146, 206
ErhI	CCWWGG	2 cut(s)	146, 206
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	8 cut(s)	203, 267, 323, 333, 611, 631, 641, 746
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FaqI	GGGAC	2 cut(s)	297, 481
FatI	CATG	8 cut(s)	199, 263, 319, 329, 607, 627, 637, 742
FbaI	TGATCA	2 cut(s)	571, 613
FokI	GGATG	7 cut(s)	77, 83, 89, 95, 347, 522, 694
FspBI	CTAG	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	237, 716
HapII	CCGG	2 cut(s)	281, 543
HgaI	GACGC	1 cut(s)	483
Hin1II	CATG	8 cut(s)	203, 267, 323, 333, 611, 631, 641, 746
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	2 cut(s)	142, 604
HpaII	CCGG	2 cut(s)	281, 543
HphI	GGTGA	3 cut(s)	34, 664, 724
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	2 cut(s)	457, 752
Hpy188III	TCNNGA	4 cut(s)	485, 557, 575, 608
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	745
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	2 cut(s)	275, 685
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 243, 386, 643, 691
HpyF3I	CTNAG	1 cut(s)	696
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	8 cut(s)	203, 267, 323, 333, 611, 631, 641, 746
Ksp22I	TGATCA	2 cut(s)	571, 613
Kzo9I	GATC	6 cut(s)	163, 239, 337, 571, 613, 641
LguI	GCTCTTC	1 cut(s)	387
LweI	GCATC	2 cut(s)	500, 672
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	6 cut(s)	165, 241, 339, 573, 615, 643
MboI	GATC	6 cut(s)	163, 239, 337, 571, 613, 641
MboII	GAAGA	5 cut(s)	106, 223, 374, 544, 547
MfeI	CAATTG	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	7 cut(s)	40, 46, 175, 293, 489, 521, 707
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	4 cut(s)	351, 413, 596, 633
MslI	CAYNNNNRTG	1 cut(s)	456
MspCI	CTTAAG	2 cut(s)	350, 632
MspI	CCGG	2 cut(s)	281, 543
MspR9I	CCNGG	2 cut(s)	282, 543
MunI	CAATTG	1 cut(s)	293
Mva1269I	GAATGC	1 cut(s)	451
MwoI	GCNNNNNNNGC	5 cut(s)	126, 243, 386, 643, 691
NciI	CCSGG	2 cut(s)	282, 543
NdeII	GATC	6 cut(s)	163, 239, 337, 571, 613, 641
NlaIII	CATG	8 cut(s)	203, 267, 323, 333, 611, 631, 641, 746
NmuCI	GTSAC	1 cut(s)	22
NspI	RCATGY	2 cut(s)	267, 746
PagI	TCATGA	1 cut(s)	607
PciI	ACATGT	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	387
PctI	GAATGC	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	142, 604
PfoI	TCCNGGA	1 cut(s)	280
Ple19I	CGATCG	1 cut(s)	166
PscI	ACATGT	1 cut(s)	263
PspPI	GGNCC	2 cut(s)	210, 370
PvuI	CGATCG	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	456
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	4 cut(s)	351, 413, 596, 633
Sau3AI	GATC	6 cut(s)	163, 239, 337, 571, 613, 641
Sau96I	GGNCC	2 cut(s)	210, 370
ScrFI	CCNGG	2 cut(s)	282, 543
SduI	GDGCHC	1 cut(s)	750
SfaNI	GCATC	2 cut(s)	500, 672
SinI	GGWCC	2 cut(s)	210, 370
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	3 cut(s)	350, 555, 632
SmoI	CTYRAG	3 cut(s)	350, 555, 632
Sse9I	AATT	7 cut(s)	40, 46, 175, 293, 489, 521, 707
SsiI	CCGC	2 cut(s)	368, 700
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	280, 541
StyI	CCWWGG	2 cut(s)	146, 206
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	162, 183
TasI	AATT	7 cut(s)	40, 46, 175, 293, 489, 521, 707
TfiI	GAWTC	2 cut(s)	142, 604
Tru1I	TTAA	4 cut(s)	351, 413, 596, 633
Tru9I	TTAA	4 cut(s)	351, 413, 596, 633
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	5 cut(s)	69, 142, 318, 477, 616
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	310
Vha464I	CTTAAG	2 cut(s)	350, 632
VpaK11BI	GGWCC	2 cut(s)	210, 370
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	2 cut(s)	267, 746
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.