Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006856

Physical Location & Seq

Genomic Coordinates Reverse (-)

306267 .. 307504

Gene Structure 1238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030868

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAGTTTGAGGAAGTTGGTGGCGAAAGCAGCAAACCCTAATAATTGTAATGAAAGTGAGGATGAGGATGGTAAGGCGAAGAGAGAGACGAGGGTGGCTCTGGGCAACGGAAGCGAGGTGGTGTTGATTCCAAGGTTCATAAGCTTCGATCGGGCTTGGAATTGGTTCGATTACCTCAACACACATGTTCCCTGGACCAGACCCACTATTCGTGTCTTCGGCCGATCCTGCCTCCAGCCTAGAGATACATGTTATGTTGCAAGCCCGGGACTAGCACAATTGGTTTACAGTGGATACCAACCTCATGCTTATTCATGGGATGATCTCCCTCCTCTTAAGGAACTCTTGGAAGCGGTCCATAAAGCTCTTCCTGGCAGCAGTTTCAATAGCTTGCTCTTAAATAGGTATAAAGGTGGTAATGACTATGTTGCTTGGCATTCTGATGATGAAAAGGTTTATGGTTCAACTCCTGAAATTGTGTCCCTATCCTTCGGATGCGAAAGGGAATTCTACTTGAAGAAGAAACCCGGTAAAACATCTCAAGAAAGAAAAAGTGATCAAGAAACTACAAGTAAGCGATTAAAGAGGAATCATGATGATCAGCACTCTTTCGTGCTTAAGCATGGATCGCTCTTCATGATGAGAGGTTATACTCAAAGGGATTGGATGCACTCTGTGCCTAAGCGGACAAAATTAGAGGCCACTCGTATCAACCTCACCTTCAGGCATGTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0008283 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360 GO:1990930

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

246

Amino Acids

28.27

Weight (kDa)

9.36

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	40 - 242	3.9e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260
fragaria_vesca	FvH4_3g00300
malus_domestica	MD10G1339500.v1.1
prunus_persica	Prupe.4G003400_v2.0.a1 Prupe.4G003400_v2.0.a1
pyrus_communis	pycom10g28930
rosa_chinensis	RchiOBHm_Chr5g0000451
rosa_laevigata	RLG00000030868
rosa_multiflora	Rmu_sc0001680.1_g000001 Rmu_sc0003949.1_g000005 Rmu_sc0022667.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075710
rosa_rugosa	Rorug04G0383700
rosa_samantha	Rh5AG003700 Rh5BG004900 Rh5CG004000 Rh5DG003800
rosa_wichuraiana	Rw5G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	353, 685
AclWI	GGATC	2 cut(s)	219, 634
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	706
AdeI	CACNNNGTG	1 cut(s)	676
AflII	CTTAAG	2 cut(s)	335, 617
AflIII	ACRYGT	2 cut(s)	184, 248
AgsI	TTSAA	3 cut(s)	385, 465, 517
AjnI	CCWGG	2 cut(s)	191, 370
AluBI	AGCT	3 cut(s)	144, 365, 390
AluI	AGCT	3 cut(s)	144, 365, 390
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	2 cut(s)	219, 634
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	2 cut(s)	220, 699
ApeKI	GCWGC	2 cut(s)	29, 375
ApoI	RAATTY	1 cut(s)	506
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
Asp700I	GAANNNNTTC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	195, 355
AsuC2I	CCSGG	3 cut(s)	266, 267, 528
AsuHPI	GGTGA	1 cut(s)	709
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	2 cut(s)	195, 355
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	735
BbvI	GCAGC	2 cut(s)	41, 387
BccI	CCATC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	193, 372
BciVI	GTATCC	1 cut(s)	287
BclI	TGATCA	2 cut(s)	556, 598
BcnI	CCSGG	3 cut(s)	266, 267, 528
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	2 cut(s)	240, 272
BfrI	CTTAAG	2 cut(s)	335, 617
BfuI	GTATCC	1 cut(s)	287
BisI	GCNGC	2 cut(s)	30, 376
BlsI	GCNGC	2 cut(s)	31, 377
Bme1390I	CCNGG	5 cut(s)	193, 266, 267, 372, 528
Bme18I	GGWCC	2 cut(s)	195, 355
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	195, 355
BmrFI	CCNGG	5 cut(s)	193, 266, 267, 372, 528
BmsI	GCATC	2 cut(s)	485, 657
BpiI	GAAGAC	1 cut(s)	208
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	525
BpuMI	CCSGG	3 cut(s)	266, 267, 528
BsaJI	CCNNGG	3 cut(s)	131, 191, 265
BseBI	CCWGG	2 cut(s)	193, 372
BseDI	CCNNGG	3 cut(s)	131, 191, 265
BseGI	GGATG	5 cut(s)	67, 73, 325, 500, 672
BseRI	GAGGAG	1 cut(s)	321
BseX3I	CGGCCG	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	41, 387
Bsh1285I	CGRYCG	2 cut(s)	151, 223
BshFI	GGCC	2 cut(s)	222, 701
BsiEI	CGRYCG	2 cut(s)	151, 223
BsiHKAI	GWGCWC	1 cut(s)	735
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	266, 528
BslFI	GGGAC	2 cut(s)	282, 466
BsmAI	GTCTC	1 cut(s)	80
BsmBI	CGTCTC	1 cut(s)	80
BsmFI	GGGAC	2 cut(s)	282, 466
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	2 cut(s)	222, 701
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	6 cut(s)	148, 224, 322, 556, 598, 626
BspACI	CCGC	2 cut(s)	353, 685
BspANI	GGCC	2 cut(s)	222, 701
BspHI	TCATGA	2 cut(s)	592, 636
BspPI	GGATC	2 cut(s)	219, 634
BspQI	GCTCTTC	2 cut(s)	372, 638
BspTI	CTTAAG	2 cut(s)	335, 617
BssECI	CCNNGG	3 cut(s)	131, 191, 265
BssMI	GATC	6 cut(s)	148, 224, 322, 556, 598, 626
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	2 cut(s)	193, 372
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	3 cut(s)	74, 372, 638
BstAFI	CTTAAG	2 cut(s)	335, 617
BstAPI	GCANNNNNTGC	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	262, 392
BstDEI	CTNAG	1 cut(s)	681
BstF5I	GGATG	5 cut(s)	67, 73, 325, 500, 672
BstKTI	GATC	6 cut(s)	151, 227, 325, 559, 601, 629
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	6 cut(s)	148, 224, 322, 556, 598, 626
BstMCI	CGRYCG	2 cut(s)	151, 223
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 111, 228, 628, 676
BstNI	CCWGG	2 cut(s)	193, 372
BstNSI	RCATGY	3 cut(s)	188, 252, 731
BstSCI	CCNGG	5 cut(s)	191, 264, 265, 370, 526
BstV1I	GCAGC	2 cut(s)	41, 387
BstV2I	GAAGAC	1 cut(s)	208
BstZI	CGGCCG	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	222, 701
BtsCI	GGATG	5 cut(s)	67, 73, 325, 500, 672
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	262, 392
CciI	TCATGA	2 cut(s)	592, 636
Cfr13I	GGNCC	2 cut(s)	195, 355
Cfr9I	CCCGGG	1 cut(s)	265
CviAII	CATG	8 cut(s)	185, 249, 305, 315, 593, 623, 637, 728
CviJI	RGCY	9 cut(s)	98, 144, 155, 222, 238, 264, 365, 390, 701
CviKI_1	RGCY	9 cut(s)	98, 144, 155, 222, 238, 264, 365, 390, 701
DdeI	CTNAG	1 cut(s)	681
DpnI	GATC	6 cut(s)	150, 226, 324, 558, 600, 628
DpnII	GATC	6 cut(s)	148, 224, 322, 556, 598, 626
DraIII	CACNNNGTG	1 cut(s)	676
EaeI	YGGCCR	1 cut(s)	220
EagI	CGGCCG	1 cut(s)	220
Eam1104I	CTCTTC	3 cut(s)	74, 372, 638
EarI	CTCTTC	3 cut(s)	74, 372, 638
EclXI	CGGCCG	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	195, 355
Eco52I	CGGCCG	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	706
Eco88I	CYCGRG	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	506
EcoRII	CCWGG	2 cut(s)	191, 370
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	8 cut(s)	188, 252, 308, 318, 596, 626, 640, 731
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	2 cut(s)	282, 466
FatI	CATG	8 cut(s)	184, 248, 304, 314, 592, 622, 636, 727
FbaI	TGATCA	2 cut(s)	556, 598
Fnu4HI	GCNGC	2 cut(s)	30, 376
FokI	GGATG	5 cut(s)	74, 80, 332, 507, 679
Fsp4HI	GCNGC	2 cut(s)	30, 376
FspBI	CTAG	2 cut(s)	240, 272
GluI	GCNGC	2 cut(s)	30, 376
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	222, 701
HapII	CCGG	2 cut(s)	266, 528
Hin1II	CATG	8 cut(s)	188, 252, 308, 318, 596, 626, 640, 731
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	2 cut(s)	127, 589
HpaII	CCGG	2 cut(s)	266, 528
HphI	GGTGA	1 cut(s)	709
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	442, 494, 737
Hpy188III	TCNNGA	5 cut(s)	470, 542, 560, 593, 637
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	499, 730
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	2 cut(s)	260, 670
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 111, 228, 628, 676
HpyF3I	CTNAG	1 cut(s)	681
Hsp92II	CATG	8 cut(s)	188, 252, 308, 318, 596, 626, 640, 731
Ksp22I	TGATCA	2 cut(s)	556, 598
Kzo9I	GATC	6 cut(s)	148, 224, 322, 556, 598, 626
LguI	GCTCTTC	2 cut(s)	372, 638
Lsp1109I	GCAGC	2 cut(s)	41, 387
LweI	GCATC	2 cut(s)	485, 657
MaeI	CTAG	2 cut(s)	240, 272
MalI	GATC	6 cut(s)	150, 226, 324, 558, 600, 628
MboI	GATC	6 cut(s)	148, 224, 322, 556, 598, 626
MboII	GAAGA	6 cut(s)	91, 208, 359, 529, 532, 625
MfeI	CAATTG	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	735
MluCI	AATT	6 cut(s)	43, 160, 278, 474, 506, 692
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	4 cut(s)	336, 398, 581, 618
MslI	CAYNNNNRTG	1 cut(s)	441
MspCI	CTTAAG	2 cut(s)	335, 617
MspI	CCGG	2 cut(s)	266, 528
MspR9I	CCNGG	5 cut(s)	193, 266, 267, 372, 528
MunI	CAATTG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	2 cut(s)	193, 372
MwoI	GCNNNNNNNGC	5 cut(s)	29, 111, 228, 628, 676
NciI	CCSGG	3 cut(s)	266, 267, 528
NdeII	GATC	6 cut(s)	148, 224, 322, 556, 598, 626
NlaIII	CATG	8 cut(s)	188, 252, 308, 318, 596, 626, 640, 731
NspI	RCATGY	3 cut(s)	188, 252, 731
PagI	TCATGA	2 cut(s)	592, 636
PciI	ACATGT	2 cut(s)	184, 248
PciSI	GCTCTTC	2 cut(s)	372, 638
PctI	GAATGC	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	127, 589
PkrI	GCNGC	2 cut(s)	31, 377
Ple19I	CGATCG	1 cut(s)	151
PscI	ACATGT	2 cut(s)	184, 248
Psp6I	CCWGG	2 cut(s)	191, 370
PspGI	CCWGG	2 cut(s)	191, 370
PspPI	GGNCC	2 cut(s)	195, 355
PvuI	CGATCG	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	441
SapI	GCTCTTC	2 cut(s)	372, 638
SaqAI	TTAA	4 cut(s)	336, 398, 581, 618
SatI	GCNGC	2 cut(s)	30, 376
Sau3AI	GATC	6 cut(s)	148, 224, 322, 556, 598, 626
Sau96I	GGNCC	2 cut(s)	195, 355
ScrFI	CCNGG	5 cut(s)	193, 266, 267, 372, 528
SduI	GDGCHC	1 cut(s)	735
SfaNI	GCATC	2 cut(s)	485, 657
SinI	GGWCC	2 cut(s)	195, 355
SmaI	CCCGGG	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	3 cut(s)	335, 540, 617
SmoI	CTYRAG	3 cut(s)	335, 540, 617
Sse9I	AATT	6 cut(s)	43, 160, 278, 474, 506, 692
SsiI	CCGC	2 cut(s)	353, 685
SspMI	CTAG	2 cut(s)	240, 272
StyD4I	CCNGG	5 cut(s)	191, 264, 265, 370, 526
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	290
TaqI	TCGA	2 cut(s)	147, 168
TasI	AATT	6 cut(s)	43, 160, 278, 474, 506, 692
TfiI	GAWTC	2 cut(s)	127, 589
Tru1I	TTAA	4 cut(s)	336, 398, 581, 618
Tru9I	TTAA	4 cut(s)	336, 398, 581, 618
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	2 cut(s)	29, 375
TspDTI	ATGAA	5 cut(s)	66, 127, 303, 462, 625
TspGWI	ACGGA	1 cut(s)	123
TspMI	CCCGGG	1 cut(s)	265
TspRI	CASTG	1 cut(s)	295
Vha464I	CTTAAG	2 cut(s)	335, 617
VpaK11BI	GGWCC	2 cut(s)	195, 355
XapI	RAATTY	1 cut(s)	506
XceI	RCATGY	3 cut(s)	188, 252, 731
XmaI	CCCGGG	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	2 cut(s)	240, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.