Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006856

Physical Location & Seq

Genomic Coordinates Forward (+)

29381749 .. 29383171

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28930.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGTTTGAGGAGGCTAAAAGTGACGGTGGGTGAACCGGCGAGCCCAAACCCTAACGTCGACGGTGACGATACCATCAAGGCCAAAAGGCAGACGGTGGGTCTGGGCAATGGAAGCGAAGTTGTGTTCATACCAAGACTGATAAGCTTCGATCAGGCTTGGAAATGGTTCGATTACCTCGACACCCAAATCGCTTGGACCCGACCCACCATTCGTGTCTTCGGCCGCTCCTGCCTCCAGCCTAGAGATACATGTTACGTAGCAAGCCCAGGACTTCCCCAGTTGGTTTACAGCGGGTACCAGCCTCGTGCCTATTCATGGGATGATCATCCTCCGCTTAAACAAATCTTGGAAGCGGTCCATAAAGCTCTTCCTGGAAGCAGTTTTAATAGCTTGCTCTTGAATAGGTATAAAGGTGGTAATGACTATGTTGGCTGGCATTCTGATGATGAGAAGCTTTATGGTTCTACTCCTGAAATTGCATCCTTAACCCTTGGATGTGACCGTGAATTCTTCTTGAAGAAGAAGAAACCCAGTAAAACAGTCCAAGAGAGAAGAGACGAGCAAGAACCTGCTAGTAAGCGCATAAAGAGGAATCATGCTGATCAGCACTCTTTCATGCTTAAGCATGGATCACTTTTGGTGATGAGAGGTTACACTCAAAGGGATTGGATGCACTCGGTGCCTAAGCGGTCAAAAGTAGAGGCAACTCGTATTAACCTCACCTTCAGAAATGTTGTTGAAGAACCTGGTGCAACTGCGGCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0008283 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360 GO:1990930

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

257

Amino Acids

29.15

Weight (kDa)

9.51

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260
fragaria_vesca	FvH4_3g00300
malus_domestica	MD10G1339500.v1.1
prunus_persica	Prupe.4G003400_v2.0.a1 Prupe.4G003400_v2.0.a1
pyrus_communis	pycom10g28930
rosa_chinensis	RchiOBHm_Chr5g0000451
rosa_laevigata	RLG00000030868
rosa_multiflora	Rmu_sc0001680.1_g000001 Rmu_sc0003949.1_g000005 Rmu_sc0022667.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075710
rosa_rugosa	Rorug04G0383700
rosa_samantha	Rh5AG003700 Rh5BG004900 Rh5CG004000 Rh5DG003800
rosa_wichuraiana	Rw5G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
Acc65I	GGTACC	1 cut(s)	297
AccB1I	GGYRCC	2 cut(s)	297, 682
AccBSI	CCGCTC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	6 cut(s)	226, 294, 335, 356, 691, 761
AclWI	GGATC	1 cut(s)	640
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	1 cut(s)	712
AdeI	CACNNNGTG	1 cut(s)	682
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	318
AflII	CTTAAG	1 cut(s)	623
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	403, 520, 743
AhdI	GACNNNNNGTC	1 cut(s)	99
AjnI	CCWGG	3 cut(s)	268, 373, 748
AluBI	AGCT	4 cut(s)	147, 368, 393, 457
AluI	AGCT	4 cut(s)	147, 368, 393, 457
Alw26I	GTCTC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	640
AoxI	GGCC	2 cut(s)	81, 223
ApoI	RAATTY	1 cut(s)	509
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
Asp700I	GAANNNNTTC	1 cut(s)	167
Asp718I	GGTACC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	2 cut(s)	198, 358
AsuHPI	GGTGA	4 cut(s)	44, 77, 655, 715
AvaII	GGWCC	2 cut(s)	198, 358
BanI	GGYRCC	2 cut(s)	297, 682
BanII	GRGCYC	1 cut(s)	47
BauI	CACGAG	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	211
BccI	CCATC	1 cut(s)	83
BciT130I	CCWGG	3 cut(s)	270, 375, 750
BclI	TGATCA	2 cut(s)	325, 604
BcoDI	GTCTC	1 cut(s)	552
BfaI	CTAG	2 cut(s)	243, 576
BfrI	CTTAAG	1 cut(s)	623
BfuAI	ACCTGC	1 cut(s)	580
BisI	GCNGC	2 cut(s)	226, 762
BlsI	GCNGC	2 cut(s)	227, 763
Bme1390I	CCNGG	3 cut(s)	270, 375, 750
Bme18I	GGWCC	2 cut(s)	198, 358
BmeRI	GACNNNNNGTC	1 cut(s)	99
BmgT120I	GGNCC	2 cut(s)	198, 358
BmiI	GGNNCC	3 cut(s)	200, 299, 684
BmrFI	CCNGG	3 cut(s)	270, 375, 750
BmrI	ACTGGG	2 cut(s)	274, 528
BmsI	GCATC	2 cut(s)	491, 663
BmuI	ACTGGG	2 cut(s)	274, 528
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	687
BsaAI	YACGTR	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	268, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	280, 534
Bse3DI	GCAATG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	3 cut(s)	270, 375, 750
BseDI	CCNNGG	2 cut(s)	268, 493
BseGI	GGATG	5 cut(s)	328, 328, 482, 503, 678
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	115
BseNI	ACTGG	2 cut(s)	280, 534
BseRI	GAGGAG	1 cut(s)	25
BseX3I	CGGCCG	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	83, 225
BshNI	GGYRCC	2 cut(s)	297, 682
BsiEI	CGRYCG	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	552
BsmBI	CGTCTC	1 cut(s)	552
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	83, 225
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	4 cut(s)	151, 325, 604, 632
BspACI	CCGC	6 cut(s)	226, 294, 335, 356, 691, 761
BspANI	GGCC	2 cut(s)	83, 225
BspLI	GGNNCC	3 cut(s)	200, 299, 684
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	640
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	2 cut(s)	297, 682
BspTI	CTTAAG	1 cut(s)	623
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	280, 534
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	268, 493
BssMI	GATC	4 cut(s)	151, 325, 604, 632
BssSI	CACGAG	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	493
Bst2BI	CACGAG	1 cut(s)	306
Bst2UI	CCWGG	3 cut(s)	270, 375, 750
Bst4CI	ACNGT	5 cut(s)	28, 65, 97, 506, 544
Bst6I	CTCTTC	2 cut(s)	375, 550
BstAFI	CTTAAG	1 cut(s)	623
BstAPI	GCANNNNNTGC	1 cut(s)	682
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	4 cut(s)	43, 265, 395, 437
BstDEI	CTNAG	1 cut(s)	687
BstF5I	GGATG	5 cut(s)	328, 328, 482, 503, 678
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	4 cut(s)	154, 328, 607, 635
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	4 cut(s)	151, 325, 604, 632
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 231, 682, 761
BstNI	CCWGG	3 cut(s)	270, 375, 750
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	3 cut(s)	268, 373, 748
BstSNI	TACGTA	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	211
BstZI	CGGCCG	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	83, 225
BtsCI	GGATG	5 cut(s)	328, 328, 482, 503, 678
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	4 cut(s)	43, 265, 395, 437
CfoI	GCGC	1 cut(s)	585
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	198, 358
CsiI	ACCWGGT	1 cut(s)	748
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	5 cut(s)	252, 318, 599, 619, 629
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	687
DpnI	GATC	4 cut(s)	153, 327, 606, 634
DpnII	GATC	4 cut(s)	151, 325, 604, 632
DraIII	CACNNNGTG	1 cut(s)	682
DriI	GACNNNNNGTC	1 cut(s)	99
EaeI	YGGCCR	1 cut(s)	223
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	375, 550
Eam1105I	GACNNNNNGTC	1 cut(s)	99
EarI	CTCTTC	2 cut(s)	375, 550
EclXI	CGGCCG	1 cut(s)	223
Eco105I	TACGTA	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	47
Eco47I	GGWCC	2 cut(s)	198, 358
Eco52I	CGGCCG	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	712
EcoRI	GAATTC	1 cut(s)	509
EcoRII	CCWGG	3 cut(s)	268, 373, 748
EcoT14I	CCWWGG	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	493
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	5 cut(s)	255, 321, 602, 622, 632
FatI	CATG	5 cut(s)	251, 317, 598, 618, 628
FauI	CCCGC	1 cut(s)	287
FbaI	TGATCA	2 cut(s)	325, 604
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	226, 762
FokI	GGATG	5 cut(s)	315, 335, 469, 510, 685
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	226, 762
FspBI	CTAG	2 cut(s)	243, 576
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	2 cut(s)	226, 762
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	83, 225
HapII	CCGG	1 cut(s)	38
HhaI	GCGC	1 cut(s)	585
Hin1II	CATG	5 cut(s)	255, 321, 602, 622, 632
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HindIII	AAGCTT	2 cut(s)	145, 455
HinfI	GANTC	1 cut(s)	595
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	4 cut(s)	44, 77, 655, 715
Hpy166II	GTNNAC	3 cut(s)	35, 61, 289
Hpy188I	TCNGA	2 cut(s)	445, 731
Hpy188III	TCNNGA	3 cut(s)	400, 473, 517
Hpy8I	GTNNAC	3 cut(s)	35, 61, 289
Hpy99I	CGWCG	2 cut(s)	62, 65
HpyAV	CCTTC	1 cut(s)	736
HpyCH4III	ACNGT	5 cut(s)	28, 65, 97, 506, 544
HpyCH4IV	ACGT	2 cut(s)	57, 258
HpyCH4V	TGCA	3 cut(s)	482, 676, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 231, 682, 761
HpyF3I	CTNAG	1 cut(s)	687
HpySE526I	ACGT	2 cut(s)	57, 258
Hsp92II	CATG	5 cut(s)	255, 321, 602, 622, 632
HspAI	GCGC	1 cut(s)	583
KpnI	GGTACC	1 cut(s)	301
Ksp22I	TGATCA	2 cut(s)	325, 604
Kzo9I	GATC	4 cut(s)	151, 325, 604, 632
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	233
LweI	GCATC	2 cut(s)	491, 663
MabI	ACCWGGT	1 cut(s)	748
MaeI	CTAG	2 cut(s)	243, 576
MaeII	ACGT	2 cut(s)	57, 258
MaeIII	GTNAC	5 cut(s)	22, 65, 254, 500, 653
MalI	GATC	4 cut(s)	153, 327, 606, 634
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	4 cut(s)	151, 325, 604, 632
MboII	GAAGA	8 cut(s)	211, 362, 505, 532, 535, 538, 567, 755
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	2 cut(s)	477, 509
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	5 cut(s)	339, 387, 488, 624, 717
MslI	CAYNNNNRTG	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	294
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	3 cut(s)	270, 375, 750
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	3 cut(s)	270, 375, 750
MwoI	GCNNNNNNNGC	4 cut(s)	114, 231, 682, 761
NdeII	GATC	4 cut(s)	151, 325, 604, 632
NlaIII	CATG	5 cut(s)	255, 321, 602, 622, 632
NlaIV	GGNNCC	3 cut(s)	200, 299, 684
NmuCI	GTSAC	3 cut(s)	22, 65, 500
NspI	RCATGY	1 cut(s)	255
PciI	ACATGT	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 177
PctI	GAATGC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	595
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	227, 763
Ppu21I	YACGTR	1 cut(s)	259
PscI	ACATGT	1 cut(s)	251
Psp6I	CCWGG	3 cut(s)	268, 373, 748
PspGI	CCWGG	3 cut(s)	268, 373, 748
PspN4I	GGNNCC	3 cut(s)	200, 299, 684
PspPI	GGNCC	2 cut(s)	198, 358
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	444
SalI	GTCGAC	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	5 cut(s)	339, 387, 488, 624, 717
SatI	GCNGC	2 cut(s)	226, 762
Sau3AI	GATC	4 cut(s)	151, 325, 604, 632
Sau96I	GGNCC	2 cut(s)	198, 358
ScrFI	CCNGG	3 cut(s)	270, 375, 750
SduI	GDGCHC	1 cut(s)	47
SexAI	ACCWGGT	1 cut(s)	748
SfaNI	GCATC	2 cut(s)	491, 663
SgrDI	CGTCGACG	1 cut(s)	59
SinI	GGWCC	2 cut(s)	198, 358
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
SnaBI	TACGTA	1 cut(s)	259
Sse9I	AATT	2 cut(s)	477, 509
SsiI	CCGC	6 cut(s)	226, 294, 335, 356, 691, 761
SspMI	CTAG	2 cut(s)	243, 576
StyD4I	CCNGG	3 cut(s)	268, 373, 748
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	5 cut(s)	28, 65, 97, 506, 544
TaiI	ACGT	2 cut(s)	60, 261
TaqI	TCGA	4 cut(s)	60, 150, 171, 180
TasI	AATT	2 cut(s)	477, 509
TauI	GCSGC	2 cut(s)	228, 764
TfiI	GAWTC	1 cut(s)	595
Tru1I	TTAA	5 cut(s)	339, 387, 488, 624, 717
Tru9I	TTAA	5 cut(s)	339, 387, 488, 624, 717
TseFI	GTSAC	3 cut(s)	22, 65, 500
Tsp45I	GTSAC	3 cut(s)	22, 65, 500
TspDTI	ATGAA	3 cut(s)	118, 306, 607
Vha464I	CTTAAG	1 cut(s)	623
VpaK11BI	GGWCC	2 cut(s)	198, 358
XapI	RAATTY	1 cut(s)	509
XceI	RCATGY	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	2 cut(s)	243, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.