Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006856

Physical Location & Seq

Genomic Coordinates Reverse (-)

169931 .. 172671

Gene Structure 2741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGTTTGAGGAAGTTGGCGACCAAAGCAAACCCTAATTGCGACCAAAGTGAGAATGATGATGAGAAGGCGAAGAAACAGACGACGGTGGCTCTGGGCAACGGTAGTGAGGTGGTGCTGATACCGAGGTTCATAAGCTTCGATCGGGCTTGGAGTTGGTTCGATTACCTCAACACAAAAATTCCTTGGACCAGACCAACTGTTCGTGTCTTCGGCCGATCCTGCCTCCAGCCTAGAGATACATGTTATGTTGCAAGTCCGGGACTACCACATTTGGTTTACAGTGGGTACCAACCTCATGCTTATTCATGGGATGATCTCCCTCCTCTTAAGGAACTCTTGGAAGCGGTCCACAAAGCTATTCCTGGCAGCAGTTTCAATAGCTTGCTGTTAAATAGGTATAAAGGTGGTAATGACTATGTTGCTTGGCATTCTGATGATGAAAAGGTTTACGGTTCAACTCCTGAAATTGCATCCCTTTCCTTTGGATGCGAAAGGGAATTCTTCTTGAAGAAGAAACCCAGTAAAACATCTCAAGAAAGGAAAAGTGATCAAGAATCTTCAAGTAAGCGATTAAAGAGGAATCATGATGATCAGCACTCTTTCATGCTTAAGCATGGATCACTCTTGGTGATGAGAGGTTATACTCAAAGGGATTGGATGCACTCTGTGCCTAAGCGGATGAAATTAGAGGCCACCCGTATCAACCTTACCTTCAGGCTTGTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0008283 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360 GO:1990930

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

244

Amino Acids

27.99

Weight (kDa)

9.42

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	38 - 240	3.7e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260
fragaria_vesca	FvH4_3g00300
malus_domestica	MD10G1339500.v1.1
prunus_persica	Prupe.4G003400_v2.0.a1 Prupe.4G003400_v2.0.a1
pyrus_communis	pycom10g28930
rosa_chinensis	RchiOBHm_Chr5g0000451
rosa_laevigata	RLG00000030868
rosa_multiflora	Rmu_sc0001680.1_g000001 Rmu_sc0003949.1_g000005 Rmu_sc0022667.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075710
rosa_rugosa	Rorug04G0383700
rosa_samantha	Rh5AG003700 Rh5BG004900 Rh5CG004000 Rh5DG003800
rosa_wichuraiana	Rw5G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	288
AciI	CCGC	2 cut(s)	347, 679
AclWI	GGATC	2 cut(s)	213, 628
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	180, 500
AcuI	CTGAAG	1 cut(s)	700
AdeI	CACNNNGTG	1 cut(s)	670
AfaI	GTAC	1 cut(s)	290
AflII	CTTAAG	2 cut(s)	329, 611
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	4 cut(s)	379, 459, 511, 564
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	3 cut(s)	138, 359, 384
AluI	AGCT	3 cut(s)	138, 359, 384
Alw21I	GWGCWC	1 cut(s)	729
AlwI	GGATC	2 cut(s)	213, 628
AoxI	GGCC	2 cut(s)	214, 693
ApeKI	GCWGC	1 cut(s)	369
ApoI	RAATTY	2 cut(s)	180, 500
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
Asp718I	GGTACC	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	189, 349
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	643
AvaII	GGWCC	2 cut(s)	189, 349
BaeI	ACNNNNGTAYC	2 cut(s)	113, 146
BanI	GGYRCC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	729
BbvI	GCAGC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	2 cut(s)	550, 592
BcnI	CCSGG	1 cut(s)	261
BfaI	CTAG	1 cut(s)	234
BfrI	CTTAAG	2 cut(s)	329, 611
BisI	GCNGC	1 cut(s)	370
BlsI	GCNGC	1 cut(s)	371
Bme1390I	CCNGG	2 cut(s)	261, 366
Bme18I	GGWCC	2 cut(s)	189, 349
BmgT120I	GGNCC	2 cut(s)	189, 349
BmiI	GGNNCC	1 cut(s)	290
BmrFI	CCNGG	2 cut(s)	261, 366
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	3 cut(s)	479, 482, 651
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	212
Bpu10I	CCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	519
BpuMI	CCSGG	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	125, 185
Bse1I	ACTGG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	125, 185
BseGI	GGATG	5 cut(s)	319, 473, 494, 666, 687
BseNI	ACTGG	1 cut(s)	522
BseRI	GAGGAG	1 cut(s)	315
BseX3I	CGGCCG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	381
Bsh1285I	CGRYCG	2 cut(s)	145, 217
BshFI	GGCC	2 cut(s)	216, 695
BshNI	GGYRCC	1 cut(s)	288
BsiEI	CGRYCG	2 cut(s)	145, 217
BsiHKAI	GWGCWC	1 cut(s)	729
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	276
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	216, 695
Bsp1286I	GDGCHC	1 cut(s)	729
Bsp143I	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
BspACI	CCGC	2 cut(s)	347, 679
BspANI	GGCC	2 cut(s)	216, 695
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	1 cut(s)	290
BspPI	GGATC	2 cut(s)	213, 628
BspT107I	GGYRCC	1 cut(s)	288
BspTI	CTTAAG	2 cut(s)	329, 611
BsrI	ACTGG	1 cut(s)	522
BssECI	CCNNGG	2 cut(s)	125, 185
BssMI	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	5 cut(s)	88, 104, 202, 284, 455
BstAFI	CTTAAG	2 cut(s)	329, 611
BstAPI	GCANNNNNTGC	1 cut(s)	670
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	675
BstF5I	GGATG	5 cut(s)	319, 473, 494, 666, 687
BstKTI	GATC	6 cut(s)	145, 221, 319, 553, 595, 623
BstMBI	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
BstMCI	CGRYCG	2 cut(s)	145, 217
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 222, 670
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	259, 364
BstV1I	GCAGC	1 cut(s)	381
BstV2I	GAAGAC	1 cut(s)	202
BstZI	CGGCCG	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	216, 695
BtsCI	GGATG	5 cut(s)	319, 473, 494, 666, 687
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	386
CciI	TCATGA	1 cut(s)	586
Cfr13I	GGNCC	2 cut(s)	189, 349
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	6 cut(s)	243, 299, 309, 587, 607, 617
CviJI	RGCY	9 cut(s)	92, 138, 149, 216, 232, 359, 384, 695, 721
CviKI_1	RGCY	9 cut(s)	92, 138, 149, 216, 232, 359, 384, 695, 721
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	675
DpnI	GATC	6 cut(s)	144, 220, 318, 552, 594, 622
DpnII	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
DraIII	CACNNNGTG	1 cut(s)	670
EaeI	YGGCCR	1 cut(s)	214
EagI	CGGCCG	1 cut(s)	214
EclXI	CGGCCG	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	189, 349
Eco52I	CGGCCG	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	700
EcoRI	GAATTC	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	6 cut(s)	246, 302, 312, 590, 610, 620
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	6 cut(s)	242, 298, 308, 586, 606, 616
FbaI	TGATCA	2 cut(s)	550, 592
Fnu4HI	GCNGC	1 cut(s)	370
FokI	GGATG	5 cut(s)	326, 460, 501, 673, 694
Fsp4HI	GCNGC	1 cut(s)	370
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	1 cut(s)	370
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	216, 695
HapII	CCGG	1 cut(s)	260
Hin1II	CATG	6 cut(s)	246, 302, 312, 590, 610, 620
HindIII	AAGCTT	1 cut(s)	136
HinfI	GANTC	2 cut(s)	557, 583
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	643
Hpy166II	GTNNAC	3 cut(s)	280, 352, 451
Hpy188I	TCNGA	2 cut(s)	436, 731
Hpy188III	TCNNGA	5 cut(s)	464, 508, 536, 554, 587
Hpy8I	GTNNAC	3 cut(s)	280, 352, 451
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	61, 724
HpyCH4III	ACNGT	5 cut(s)	88, 104, 202, 284, 455
HpyCH4V	TGCA	3 cut(s)	254, 473, 664
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 222, 670
HpyF3I	CTNAG	1 cut(s)	675
Hsp92II	CATG	6 cut(s)	246, 302, 312, 590, 610, 620
KpnI	GGTACC	1 cut(s)	292
Ksp22I	TGATCA	2 cut(s)	550, 592
Kzo9I	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	3 cut(s)	479, 482, 651
MaeI	CTAG	1 cut(s)	234
MalI	GATC	6 cut(s)	144, 220, 318, 552, 594, 622
MboI	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
MboII	GAAGA	6 cut(s)	85, 202, 496, 523, 526, 552
MhlI	GDGCHC	1 cut(s)	729
MluCI	AATT	5 cut(s)	37, 180, 468, 500, 686
MseI	TTAA	4 cut(s)	330, 392, 575, 612
MslI	CAYNNNNRTG	1 cut(s)	435
MspCI	CTTAAG	2 cut(s)	329, 611
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	2 cut(s)	261, 366
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	3 cut(s)	26, 222, 670
NciI	CCSGG	1 cut(s)	261
NdeII	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
NlaIII	CATG	6 cut(s)	246, 302, 312, 590, 610, 620
NlaIV	GGNNCC	1 cut(s)	290
NspI	RCATGY	1 cut(s)	246
PagI	TCATGA	1 cut(s)	586
PciI	ACATGT	1 cut(s)	242
PctI	GAATGC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	557, 583
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	371
Ple19I	CGATCG	1 cut(s)	145
PscI	ACATGT	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	2 cut(s)	189, 349
PvuI	CGATCG	1 cut(s)	145
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	4 cut(s)	330, 392, 575, 612
SatI	GCNGC	1 cut(s)	370
Sau3AI	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
Sau96I	GGNCC	2 cut(s)	189, 349
ScrFI	CCNGG	2 cut(s)	261, 366
SduI	GDGCHC	1 cut(s)	729
SfaNI	GCATC	3 cut(s)	479, 482, 651
SinI	GGWCC	2 cut(s)	189, 349
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	3 cut(s)	329, 534, 611
SmoI	CTYRAG	3 cut(s)	329, 534, 611
Sse9I	AATT	5 cut(s)	37, 180, 468, 500, 686
SsiI	CCGC	2 cut(s)	347, 679
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	259, 364
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	5 cut(s)	88, 104, 202, 284, 455
TaqI	TCGA	2 cut(s)	141, 162
TasI	AATT	5 cut(s)	37, 180, 468, 500, 686
TfiI	GAWTC	2 cut(s)	557, 583
Tru1I	TTAA	4 cut(s)	330, 392, 575, 612
Tru9I	TTAA	4 cut(s)	330, 392, 575, 612
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	1 cut(s)	369
TspDTI	ATGAA	5 cut(s)	121, 297, 456, 595, 698
TspRI	CASTG	1 cut(s)	289
Vha464I	CTTAAG	2 cut(s)	329, 611
VpaK11BI	GGWCC	2 cut(s)	189, 349
XapI	RAATTY	2 cut(s)	180, 500
XceI	RCATGY	1 cut(s)	246
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.