Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006856

Physical Location & Seq

Genomic Coordinates Reverse (-)

275597 .. 277246

Gene Structure 1650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG003700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAGTTTGAGGAAGTTGGTGACGAAAGCAAACCCTAATTGTAATGAAAGTGAGGATGAGGATGGTAAGGCGAAGAGAGAGACGAGGGTGGCTCTGGGCAACGGAAGCGAGGTGGTGTTGATTCCAAGGTTCATAAGCTTCGATCGGGCTTGGAATTGGTTCGATTACCTCAACACACATGTTCCCTGGACTAGACCCACTATTCGTGTCTTCGGCCGATCCTGCCTCCAGCCTAGAGATACATGTTATGTTGCAAGTCCGGGACTACCACAATTGGTTTACAGTGGATACCAACCTCATGCTTATTCATGGGATGATCTCCCTCCTCTTAAGGAACTCTTGGAAGCGGTCCATAAAGCCCTTCCTGGCAGCAGTTTCAATAGCTTGCTCTTAAATAGGTATAAAGGTGGTAATGACTATGTTGCTTGGCATTCTGATGATGAAAAGGTTTATGGTTCAACTCCTGAAATTGCGTCCCTATCCTTTGGATGCGAAAGGGAATTCTACTTGAAGAAGAAACCCGGTAAAACATCTCAAGAAAGAAAAAGTGATCAAGAAGCTACAAGTAAGCGATTAAAGAGGAATCATGATGATCAGCACTCTTTCATGCTTAAGCATGGATCGCTCTTGGTGATGAGAGGTTATACCCAAAGGGATTGGATGCACTCTGTGCCTAAGCGCACAAAATTAGAGGCCACTCGTATCAACCTCACCTTCAGGCATGTGCTCTCATATAACGGTTCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0008283 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360 GO:1990930

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

249

Amino Acids

28.71

Weight (kDa)

9.42

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	38 - 240	4.1e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260
fragaria_vesca	FvH4_3g00300
malus_domestica	MD10G1339500.v1.1
prunus_persica	Prupe.4G003400_v2.0.a1 Prupe.4G003400_v2.0.a1
pyrus_communis	pycom10g28930
rosa_chinensis	RchiOBHm_Chr5g0000451
rosa_laevigata	RLG00000030868
rosa_multiflora	Rmu_sc0001680.1_g000001 Rmu_sc0003949.1_g000005 Rmu_sc0022667.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075710
rosa_rugosa	Rorug04G0383700
rosa_samantha	Rh5AG003700 Rh5BG004900 Rh5CG004000 Rh5DG003800
rosa_wichuraiana	Rw5G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	2 cut(s)	213, 628
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	700
AdeI	CACNNNGTG	1 cut(s)	670
AflII	CTTAAG	2 cut(s)	329, 611
AflIII	ACRYGT	2 cut(s)	178, 242
AgsI	TTSAA	3 cut(s)	379, 459, 511
AjnI	CCWGG	2 cut(s)	185, 364
AluBI	AGCT	3 cut(s)	138, 384, 560
AluI	AGCT	3 cut(s)	138, 384, 560
Alw21I	GWGCWC	1 cut(s)	729
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	213, 628
AoxI	GGCC	2 cut(s)	214, 693
ApeKI	GCWGC	1 cut(s)	369
ApoI	RAATTY	1 cut(s)	500
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	681
AspS9I	GGNCC	1 cut(s)	349
AsuC2I	CCSGG	2 cut(s)	261, 522
AsuHPI	GGTGA	3 cut(s)	31, 643, 703
AvaII	GGWCC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	729
BbvI	GCAGC	1 cut(s)	381
BccI	CCATC	1 cut(s)	56
BciT130I	CCWGG	2 cut(s)	187, 366
BciVI	GTATCC	1 cut(s)	281
BclI	TGATCA	2 cut(s)	550, 592
BcnI	CCSGG	2 cut(s)	261, 522
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	3 cut(s)	192, 234, 744
BfrI	CTTAAG	2 cut(s)	329, 611
BfuI	GTATCC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	370
BlsI	GCNGC	1 cut(s)	371
Bme1390I	CCNGG	4 cut(s)	187, 261, 366, 522
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmrFI	CCNGG	4 cut(s)	187, 261, 366, 522
BmsI	GCATC	2 cut(s)	479, 651
BpiI	GAAGAC	1 cut(s)	202
BplI	GAGNNNNNCTC	2 cut(s)	76, 108
BpmI	CTGGAG	1 cut(s)	212
Bpu10I	CCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	1 cut(s)	519
BpuMI	CCSGG	2 cut(s)	261, 522
BsaJI	CCNNGG	2 cut(s)	125, 185
BseBI	CCWGG	2 cut(s)	187, 366
BseDI	CCNNGG	2 cut(s)	125, 185
BseGI	GGATG	5 cut(s)	61, 67, 319, 494, 666
BseRI	GAGGAG	1 cut(s)	315
BseX3I	CGGCCG	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	381
Bsh1285I	CGRYCG	2 cut(s)	145, 217
BshFI	GGCC	2 cut(s)	216, 695
BsiEI	CGRYCG	2 cut(s)	145, 217
BsiHKAI	GWGCWC	1 cut(s)	729
BsiSI	CCGG	2 cut(s)	260, 522
BslFI	GGGAC	2 cut(s)	276, 460
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	276, 460
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	216, 695
Bsp1286I	GDGCHC	1 cut(s)	729
Bsp143I	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	2 cut(s)	216, 695
BspHI	TCATGA	1 cut(s)	586
BspPI	GGATC	2 cut(s)	213, 628
BspTI	CTTAAG	2 cut(s)	329, 611
BssECI	CCNNGG	2 cut(s)	125, 185
BssMI	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	187, 366
Bst4CI	ACNGT	2 cut(s)	284, 740
Bst6I	CTCTTC	1 cut(s)	68
BstAFI	CTTAAG	2 cut(s)	329, 611
BstAPI	GCANNNNNTGC	1 cut(s)	670
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	675
BstF5I	GGATG	5 cut(s)	61, 67, 319, 494, 666
BstHHI	GCGC	1 cut(s)	681
BstKTI	GATC	6 cut(s)	145, 221, 319, 553, 595, 623
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
BstMCI	CGRYCG	2 cut(s)	145, 217
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 222, 622, 670
BstNI	CCWGG	2 cut(s)	187, 366
BstNSI	RCATGY	3 cut(s)	182, 246, 725
BstSCI	CCNGG	4 cut(s)	185, 259, 364, 520
BstV1I	GCAGC	1 cut(s)	381
BstV2I	GAAGAC	1 cut(s)	202
BstZI	CGGCCG	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	2 cut(s)	216, 695
BtsCI	GGATG	5 cut(s)	61, 67, 319, 494, 666
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	386
CciI	TCATGA	1 cut(s)	586
CfoI	GCGC	1 cut(s)	681
Cfr13I	GGNCC	1 cut(s)	349
CseI	GACGC	1 cut(s)	462
CviAII	CATG	8 cut(s)	179, 243, 299, 309, 587, 607, 617, 722
CviJI	RGCY	9 cut(s)	92, 138, 149, 216, 232, 359, 384, 560, 695
CviKI_1	RGCY	9 cut(s)	92, 138, 149, 216, 232, 359, 384, 560, 695
DdeI	CTNAG	1 cut(s)	675
DpnI	GATC	6 cut(s)	144, 220, 318, 552, 594, 622
DpnII	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
DraIII	CACNNNGTG	1 cut(s)	670
EaeI	YGGCCR	1 cut(s)	214
EagI	CGGCCG	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EclXI	CGGCCG	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	349
Eco52I	CGGCCG	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	700
EcoRI	GAATTC	1 cut(s)	500
EcoRII	CCWGG	2 cut(s)	185, 364
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	8 cut(s)	182, 246, 302, 312, 590, 610, 620, 725
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	2 cut(s)	276, 460
FatI	CATG	8 cut(s)	178, 242, 298, 308, 586, 606, 616, 721
FbaI	TGATCA	2 cut(s)	550, 592
Fnu4HI	GCNGC	1 cut(s)	370
FokI	GGATG	5 cut(s)	68, 74, 326, 501, 673
Fsp4HI	GCNGC	1 cut(s)	370
FspBI	CTAG	3 cut(s)	192, 234, 744
GlaI	GCGC	1 cut(s)	680
GluI	GCNGC	1 cut(s)	370
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	216, 695
HapII	CCGG	2 cut(s)	260, 522
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	1 cut(s)	681
Hin1II	CATG	8 cut(s)	182, 246, 302, 312, 590, 610, 620, 725
Hin6I	GCGC	1 cut(s)	679
HinP1I	GCGC	1 cut(s)	679
HindIII	AAGCTT	1 cut(s)	136
HinfI	GANTC	2 cut(s)	121, 583
HpaII	CCGG	2 cut(s)	260, 522
HphI	GGTGA	3 cut(s)	31, 643, 703
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	4 cut(s)	464, 536, 554, 587
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	2 cut(s)	371, 724
HpyCH4III	ACNGT	2 cut(s)	284, 740
HpyCH4V	TGCA	2 cut(s)	254, 664
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 222, 622, 670
HpyF3I	CTNAG	1 cut(s)	675
Hsp92II	CATG	8 cut(s)	182, 246, 302, 312, 590, 610, 620, 725
HspAI	GCGC	1 cut(s)	679
Ksp22I	TGATCA	2 cut(s)	550, 592
Kzo9I	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	2 cut(s)	479, 651
MaeI	CTAG	3 cut(s)	192, 234, 744
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	6 cut(s)	144, 220, 318, 552, 594, 622
MboI	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
MboII	GAAGA	4 cut(s)	85, 202, 523, 526
MfeI	CAATTG	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	729
MluCI	AATT	6 cut(s)	37, 154, 272, 468, 500, 686
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	4 cut(s)	330, 392, 575, 612
MslI	CAYNNNNRTG	1 cut(s)	435
MspCI	CTTAAG	2 cut(s)	329, 611
MspI	CCGG	2 cut(s)	260, 522
MspR9I	CCNGG	4 cut(s)	187, 261, 366, 522
MunI	CAATTG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	2 cut(s)	187, 366
MwoI	GCNNNNNNNGC	4 cut(s)	105, 222, 622, 670
NciI	CCSGG	2 cut(s)	261, 522
NdeII	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
NlaIII	CATG	8 cut(s)	182, 246, 302, 312, 590, 610, 620, 725
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	3 cut(s)	182, 246, 725
PagI	TCATGA	1 cut(s)	586
PciI	ACATGT	2 cut(s)	178, 242
PctI	GAATGC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	121, 583
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	371
Ple19I	CGATCG	1 cut(s)	145
PscI	ACATGT	2 cut(s)	178, 242
Psp6I	CCWGG	2 cut(s)	185, 364
PspGI	CCWGG	2 cut(s)	185, 364
PspPI	GGNCC	1 cut(s)	349
PvuI	CGATCG	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	4 cut(s)	330, 392, 575, 612
SatI	GCNGC	1 cut(s)	370
Sau3AI	GATC	6 cut(s)	142, 218, 316, 550, 592, 620
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	4 cut(s)	187, 261, 366, 522
SduI	GDGCHC	1 cut(s)	729
SfaNI	GCATC	2 cut(s)	479, 651
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	3 cut(s)	329, 534, 611
SmoI	CTYRAG	3 cut(s)	329, 534, 611
Sse9I	AATT	6 cut(s)	37, 154, 272, 468, 500, 686
SsiI	CCGC	1 cut(s)	347
SspMI	CTAG	3 cut(s)	192, 234, 744
StyD4I	CCNGG	4 cut(s)	185, 259, 364, 520
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	284, 740
TaqI	TCGA	2 cut(s)	141, 162
TasI	AATT	6 cut(s)	37, 154, 272, 468, 500, 686
TfiI	GAWTC	2 cut(s)	121, 583
Tru1I	TTAA	4 cut(s)	330, 392, 575, 612
Tru9I	TTAA	4 cut(s)	330, 392, 575, 612
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	369
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	5 cut(s)	60, 121, 297, 456, 595
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	289
Vha464I	CTTAAG	2 cut(s)	329, 611
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	500
XceI	RCATGY	3 cut(s)	182, 246, 725
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	3 cut(s)	192, 234, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.