Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022667.1

Orthogroup ID

OG0006856

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 585

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022667.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

cctagagatacatgttatgttgcaagtccgggactaccacaattggtttacagtggataccaacctcatgcttattcatgggatgatctccctcctcttaaggaactcttggaagcggtccataaagctcttcctggcagcagtttcaatagcttgatcttaaataggtataaaggtggtaatgactatgttgcttggcattctgatgatgaaaaggtttatggttcgactcctgaaattgcgtccctgtcctttggatgcgaaagggaattctacttgaagaagaaacccggtaaaacatctcaaggtataatcatccatcatccatctcagctgttttctccatttatatattatacacaaggaaggaacttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0008283 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360 GO:1990930

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

125

Amino Acids

14.14

Weight (kDa)

7.4

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260
fragaria_vesca	FvH4_3g00300
malus_domestica	MD10G1339500.v1.1
prunus_persica	Prupe.4G003400_v2.0.a1 Prupe.4G003400_v2.0.a1
pyrus_communis	pycom10g28930
rosa_chinensis	RchiOBHm_Chr5g0000451
rosa_laevigata	RLG00000030868
rosa_multiflora	Rmu_sc0001680.1_g000001 Rmu_sc0003949.1_g000005 Rmu_sc0022667.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075710
rosa_rugosa	Rorug04G0383700
rosa_samantha	Rh5AG003700 Rh5BG004900 Rh5CG004000 Rh5DG003800
rosa_wichuraiana	Rw5G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	269
AflII	CTTAAG	1 cut(s)	98
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	148, 280
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	3 cut(s)	128, 153, 334
AluI	AGCT	3 cut(s)	128, 153, 334
ApeKI	GCWGC	1 cut(s)	138
ApoI	RAATTY	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	118
AsuC2I	CCSGG	2 cut(s)	30, 291
AvaII	GGWCC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	2 cut(s)	327, 334
BciT130I	CCWGG	1 cut(s)	135
BciVI	GTATCC	1 cut(s)	50
BcnI	CCSGG	2 cut(s)	30, 291
BfaI	CTAG	2 cut(s)	3, 376
BfrI	CTTAAG	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	50
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	3 cut(s)	30, 135, 291
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmrFI	CCNGG	3 cut(s)	30, 135, 291
BmsI	GCATC	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	2 cut(s)	30, 291
BseBI	CCWGG	1 cut(s)	135
BseGI	GGATG	4 cut(s)	88, 263, 315, 322
BseMII	CTCAG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	29, 291
BslFI	GGGAC	2 cut(s)	45, 229
BsmFI	GGGAC	2 cut(s)	45, 229
BsmI	GAATGC	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	85, 156
BspACI	CCGC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	343
BspQI	GCTCTTC	1 cut(s)	135
BspTI	CTTAAG	1 cut(s)	98
BssMI	GATC	2 cut(s)	85, 156
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	4 cut(s)	88, 263, 315, 322
BstKTI	GATC	2 cut(s)	88, 159
BstMBI	GATC	2 cut(s)	85, 156
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	15
BstSCI	CCNGG	3 cut(s)	28, 133, 289
BstV1I	GCAGC	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	50
BtsCI	GGATG	4 cut(s)	88, 263, 315, 322
BtsIMutI	CAGTG	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	231
CviAII	CATG	3 cut(s)	12, 68, 78
CviJI	RGCY	3 cut(s)	128, 153, 334
CviKI_1	RGCY	3 cut(s)	128, 153, 334
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	2 cut(s)	87, 158
DpnII	GATC	2 cut(s)	85, 156
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	133
FaeI	CATG	3 cut(s)	15, 71, 81
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	2 cut(s)	45, 229
FatI	CATG	3 cut(s)	11, 67, 77
Fnu4HI	GCNGC	1 cut(s)	139
FokI	GGATG	4 cut(s)	95, 270, 302, 309
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	2 cut(s)	3, 376
GluI	GCNGC	1 cut(s)	139
HapII	CCGG	2 cut(s)	29, 291
HgaI	GACGC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	15, 71, 81
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	2 cut(s)	29, 291
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	360
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	15, 71, 81
Kzo9I	GATC	2 cut(s)	85, 156
LguI	GCTCTTC	1 cut(s)	135
LpnPI	CCDG	6 cut(s)	42, 120, 147, 246, 260, 304
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	2 cut(s)	3, 376
MalI	GATC	2 cut(s)	87, 158
MboI	GATC	2 cut(s)	85, 156
MboII	GAAGA	3 cut(s)	122, 292, 295
MfeI	CAATTG	1 cut(s)	41
MluCI	AATT	3 cut(s)	41, 237, 269
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	3 cut(s)	75, 102, 105
MseI	TTAA	2 cut(s)	99, 161
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	334
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	2 cut(s)	29, 291
MspR9I	CCNGG	3 cut(s)	30, 135, 291
MunI	CAATTG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	135
NciI	CCSGG	2 cut(s)	30, 291
NdeII	GATC	2 cut(s)	85, 156
NlaIII	CATG	3 cut(s)	15, 71, 81
NspI	RCATGY	1 cut(s)	15
PciI	ACATGT	1 cut(s)	11
PciSI	GCTCTTC	1 cut(s)	135
PctI	GAATGC	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	140
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PscI	ACATGT	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	99, 161
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	2 cut(s)	85, 156
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	3 cut(s)	30, 135, 291
SetI	ASST	8 cut(s)	67, 130, 155, 170, 178, 219, 310, 336
SfaNI	GCATC	1 cut(s)	248
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	98, 303
SmoI	CTYRAG	2 cut(s)	98, 303
Sse9I	AATT	3 cut(s)	41, 237, 269
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	2 cut(s)	3, 376
StyD4I	CCNGG	3 cut(s)	28, 133, 289
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	227
TasI	AATT	3 cut(s)	41, 237, 269
Tru1I	TTAA	2 cut(s)	99, 161
Tru9I	TTAA	2 cut(s)	99, 161
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	66, 225
TspRI	CASTG	1 cut(s)	58
Vha464I	CTTAAG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	15
XspI	CTAG	2 cut(s)	3, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.