Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006856

Physical Location & Seq

Genomic Coordinates Reverse (-)

230375 .. 232863

Gene Structure 2489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G003400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGTTTGAGGAAGTTGAAGGTGTCGGTGACGGTGGGTGGTGAAGCGACGAACCCAAGCCCTAATAATGAGAGTGAGAATAAGGCGAAAAGACAGACGCTAGTTCTGGGCAATGGAAGCGAAGTTGTGTTCGTCCCAAGGTTCGTTAGCTTCGATCAGGCTTGGACATGGTTCGATTACCTCCACACCCATATCCCCTGGACCAGACCCACCATTCGCGTCTTCGGTCGTTCCTGCCTCCAGCCTAGAGATACATGTTATGTAGCAAGCCCAGGGCTCCCTCAATTGGTTTACAGCGGCTACCAGCCTCATGCCTATTCATGGGATGATCATCCACCACTTAAGCAAATCTTGGAAGCGGTCCATAAAGCTCTTCCTGGCAGCAGTTTTAATAGCTTGATCTTAAATAGGTATAAAGGTGGTAATGACTATGTTGGTTGGCATTCTGATGATGAGAAGCTTTATGGATCAACTCCTGAAATCGCGTCCTTATCCCTTGGATGCGAACGTGAGTTCTTCTTGAAGAAGAAACCCAGTAAAACATGCCAACAAAGCAGAGATGATCAAGAACCTAAAAGTAAGCGATTAAAGAGGAACCATGCTGATCAGCACTCTTTCACACTTAAGCATGGATCGCTATTGGTGATGAGAGGTTACACTCAAAGGGATTGGATGCATTCGGTGCCTAAGCGGACAAAGGTAGAGGCAACTCGTATCAACCTCACATTCAGATGGGTTCTTGAAGACCCTGGTGCGATGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0008283 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360 GO:1990930

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

255

Amino Acids

29.05

Weight (kDa)

9.46

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260
fragaria_vesca	FvH4_3g00300
malus_domestica	MD10G1339500.v1.1
prunus_persica	Prupe.4G003400_v2.0.a1 Prupe.4G003400_v2.0.a1
pyrus_communis	pycom10g28930
rosa_chinensis	RchiOBHm_Chr5g0000451
rosa_laevigata	RLG00000030868
rosa_multiflora	Rmu_sc0001680.1_g000001 Rmu_sc0003949.1_g000005 Rmu_sc0022667.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075710
rosa_rugosa	Rorug04G0383700
rosa_samantha	Rh5AG003700 Rh5BG004900 Rh5CG004000 Rh5DG003800
rosa_wichuraiana	Rw5G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	682
AccII	CGCG	2 cut(s)	219, 485
AciI	CCGC	3 cut(s)	297, 359, 691
AclWI	GGATC	2 cut(s)	475, 640
AfiI	CCNNNNNNNGG	2 cut(s)	286, 321
AflII	CTTAAG	2 cut(s)	341, 623
AflIII	ACRYGT	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	19, 523, 743
AjnI	CCWGG	4 cut(s)	197, 271, 376, 748
AluBI	AGCT	4 cut(s)	150, 371, 396, 460
AluI	AGCT	4 cut(s)	150, 371, 396, 460
AlwI	GGATC	2 cut(s)	475, 640
ApeKI	GCWGC	1 cut(s)	381
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
AspS9I	GGNCC	2 cut(s)	201, 361
AsuHPI	GGTGA	3 cut(s)	40, 53, 655
AvaII	GGWCC	2 cut(s)	201, 361
BanI	GGYRCC	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	2 cut(s)	214, 750
BbvI	GCAGC	1 cut(s)	393
BccI	CCATC	1 cut(s)	726
BciT130I	CCWGG	4 cut(s)	199, 273, 378, 750
BclI	TGATCA	3 cut(s)	328, 562, 604
BfaI	CTAG	2 cut(s)	101, 246
BfrI	CTTAAG	2 cut(s)	341, 623
BisI	GCNGC	2 cut(s)	298, 382
BlsI	GCNGC	2 cut(s)	299, 383
Bme1390I	CCNGG	4 cut(s)	199, 273, 378, 750
Bme18I	GGWCC	2 cut(s)	201, 361
BmgT120I	GGNCC	2 cut(s)	201, 361
BmiI	GGNNCC	3 cut(s)	278, 596, 684
BmrFI	CCNGG	4 cut(s)	199, 273, 378, 750
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	2 cut(s)	491, 663
BmuI	ACTGGG	1 cut(s)	528
BpiI	GAAGAC	2 cut(s)	214, 750
BpmI	CTGGAG	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	687
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	6 cut(s)	137, 197, 271, 272, 496, 748
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 321
Bse1I	ACTGG	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	4 cut(s)	199, 273, 378, 750
BseDI	CCNNGG	6 cut(s)	137, 197, 271, 272, 496, 748
BseGI	GGATG	4 cut(s)	331, 331, 506, 678
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	286, 321
BseMI	GCAATG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	534
BseXI	GCAGC	1 cut(s)	393
Bsh1236I	CGCG	2 cut(s)	219, 485
Bsh1285I	CGRYCG	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	682
BsiEI	CGRYCG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	286, 321
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	2 cut(s)	442, 676
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	7 cut(s)	154, 328, 399, 467, 562, 604, 632
BspACI	CCGC	3 cut(s)	297, 359, 691
BspFNI	CGCG	2 cut(s)	219, 485
BspLI	GGNNCC	3 cut(s)	278, 596, 684
BspPI	GGATC	2 cut(s)	475, 640
BspQI	GCTCTTC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	682
BspTI	CTTAAG	2 cut(s)	341, 623
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	534
BssECI	CCNNGG	6 cut(s)	137, 197, 271, 272, 496, 748
BssMI	GATC	7 cut(s)	154, 328, 399, 467, 562, 604, 632
BssT1I	CCWWGG	2 cut(s)	137, 496
Bst2UI	CCWGG	4 cut(s)	199, 273, 378, 750
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	378
BstAFI	CTTAAG	2 cut(s)	341, 623
BstAPI	GCANNNNNTGC	1 cut(s)	682
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	687
BstF5I	GGATG	4 cut(s)	331, 331, 506, 678
BstFNI	CGCG	2 cut(s)	219, 485
BstKTI	GATC	7 cut(s)	157, 331, 402, 470, 565, 607, 635
BstMBI	GATC	7 cut(s)	154, 328, 399, 467, 562, 604, 632
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 552, 634, 682
BstNI	CCWGG	4 cut(s)	199, 273, 378, 750
BstNSI	RCATGY	2 cut(s)	258, 546
BstSCI	CCNGG	4 cut(s)	197, 271, 376, 748
BstUI	CGCG	2 cut(s)	219, 485
BstV1I	GCAGC	1 cut(s)	393
BstV2I	GAAGAC	2 cut(s)	214, 750
BtsCI	GGATG	4 cut(s)	331, 331, 506, 678
Cac8I	GCNNGC	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	201, 361
CseI	GACGC	3 cut(s)	106, 208, 474
CviAII	CATG	7 cut(s)	168, 255, 311, 321, 543, 599, 629
DdeI	CTNAG	1 cut(s)	687
DpnI	GATC	7 cut(s)	156, 330, 401, 469, 564, 606, 634
DpnII	GATC	7 cut(s)	154, 328, 399, 467, 562, 604, 632
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	2 cut(s)	137, 496
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	201, 361
EcoRII	CCWGG	4 cut(s)	197, 271, 376, 748
EcoT14I	CCWWGG	2 cut(s)	137, 496
EcoT22I	ATGCAT	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	279
ErhI	CCWWGG	2 cut(s)	137, 496
FaeI	CATG	7 cut(s)	171, 258, 314, 324, 546, 602, 632
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	7 cut(s)	167, 254, 310, 320, 542, 598, 628
FbaI	TGATCA	3 cut(s)	328, 562, 604
Fnu4HI	GCNGC	2 cut(s)	298, 382
FokI	GGATG	4 cut(s)	318, 338, 513, 685
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	2 cut(s)	298, 382
FspBI	CTAG	2 cut(s)	101, 246
GluI	GCNGC	2 cut(s)	298, 382
GsuI	CTGGAG	1 cut(s)	224
HgaI	GACGC	3 cut(s)	106, 208, 474
Hin1II	CATG	7 cut(s)	171, 258, 314, 324, 546, 602, 632
HindIII	AAGCTT	1 cut(s)	458
HphI	GGTGA	3 cut(s)	40, 53, 655
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	448, 731
Hpy188III	TCNNGA	4 cut(s)	476, 520, 566, 740
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	1 cut(s)	676
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 552, 634, 682
HpyF3I	CTNAG	1 cut(s)	687
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	7 cut(s)	171, 258, 314, 324, 546, 602, 632
Ksp22I	TGATCA	3 cut(s)	328, 562, 604
Kzo9I	GATC	7 cut(s)	154, 328, 399, 467, 562, 604, 632
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	282
Lsp1109I	GCAGC	1 cut(s)	393
LweI	GCATC	2 cut(s)	491, 663
MaeI	CTAG	2 cut(s)	101, 246
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	2 cut(s)	28, 653
MalI	GATC	7 cut(s)	156, 330, 401, 469, 564, 606, 634
MboI	GATC	7 cut(s)	154, 328, 399, 467, 562, 604, 632
MboII	GAAGA	6 cut(s)	214, 365, 508, 535, 538, 755
MfeI	CAATTG	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	1 cut(s)	284
MnlI	CCTC	9 cut(s)	3, 191, 248, 291, 318, 585, 644, 697, 731
Mph1103I	ATGCAT	1 cut(s)	678
MseI	TTAA	6 cut(s)	342, 390, 404, 587, 624, 763
MslI	CAYNNNNRTG	2 cut(s)	447, 730
MspA1I	CMGCKG	1 cut(s)	297
MspCI	CTTAAG	2 cut(s)	341, 623
MspR9I	CCNGG	4 cut(s)	199, 273, 378, 750
MunI	CAATTG	1 cut(s)	284
Mva1269I	GAATGC	2 cut(s)	442, 676
MvaI	CCWGG	4 cut(s)	199, 273, 378, 750
MvnI	CGCG	2 cut(s)	219, 485
MwoI	GCNNNNNNNGC	4 cut(s)	117, 552, 634, 682
NdeII	GATC	7 cut(s)	154, 328, 399, 467, 562, 604, 632
NlaIII	CATG	7 cut(s)	171, 258, 314, 324, 546, 602, 632
NlaIV	GGNNCC	3 cut(s)	278, 596, 684
NmuCI	GTSAC	1 cut(s)	28
NsiI	ATGCAT	1 cut(s)	678
NspI	RCATGY	2 cut(s)	258, 546
PasI	CCCWGGG	1 cut(s)	272
PciI	ACATGT	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	2 cut(s)	442, 676
PkrI	GCNGC	2 cut(s)	299, 383
PscI	ACATGT	1 cut(s)	254
Psp6I	CCWGG	4 cut(s)	197, 271, 376, 748
PspGI	CCWGG	4 cut(s)	197, 271, 376, 748
PspN4I	GGNNCC	3 cut(s)	278, 596, 684
PspPI	GGNCC	2 cut(s)	201, 361
RseI	CAYNNNNRTG	2 cut(s)	447, 730
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	6 cut(s)	342, 390, 404, 587, 624, 763
SatI	GCNGC	2 cut(s)	298, 382
Sau3AI	GATC	7 cut(s)	154, 328, 399, 467, 562, 604, 632
Sau96I	GGNCC	2 cut(s)	201, 361
ScrFI	CCNGG	4 cut(s)	199, 273, 378, 750
SduI	GDGCHC	1 cut(s)	279
SfaNI	GCATC	2 cut(s)	491, 663
SinI	GGWCC	2 cut(s)	201, 361
SmiMI	CAYNNNNRTG	2 cut(s)	447, 730
SmlI	CTYRAG	2 cut(s)	341, 623
SmoI	CTYRAG	2 cut(s)	341, 623
Sse9I	AATT	1 cut(s)	284
SsiI	CCGC	3 cut(s)	297, 359, 691
SspMI	CTAG	2 cut(s)	101, 246
StyD4I	CCNGG	4 cut(s)	197, 271, 376, 748
StyI	CCWWGG	2 cut(s)	137, 496
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	2 cut(s)	153, 174
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	1 cut(s)	284
TauI	GCSGC	1 cut(s)	300
Tru1I	TTAA	6 cut(s)	342, 390, 404, 587, 624, 763
Tru9I	TTAA	6 cut(s)	342, 390, 404, 587, 624, 763
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	309
Vha464I	CTTAAG	2 cut(s)	341, 623
VpaK11BI	GGWCC	2 cut(s)	201, 361
XceI	RCATGY	2 cut(s)	258, 546
XspI	CTAG	2 cut(s)	101, 246
Zsp2I	ATGCAT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.