Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006856

Physical Location & Seq

Genomic Coordinates Forward (+)

96352717 .. 96354184

Gene Structure 1468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAGTTTGAGGAAGTTGGTGAGGAAAGCAAACCCTAATTGTAATAATGAAAGTGAGGATGAGGACGGTAAGGCGAAGAGAGAGAGGAGGGTGGCTCTGGGCAACGGAAGCGAGGTGGTGTTGATTCCAAGGTTCATAAGCTTCGATCGGGCTTGGAATTGGTTCGATTACCTCAACACGCATGTTCCCTGGACCAGACCCACTATTCGTGTCTTCGGCCGATCCTGCCTCCAGCCTAGAGATACATGTTATGTTGCAAGTCCGGGACTGCCACAATTGGTTTACAGTGGATACCAACCTCATGCTTATTCATGGGATGATCTCCCTCCTCTTAAGGAACTCTTGGAAGCGGTCCATAAAGCTCTTCCTGGCAGCAGTTTCAATACCTTGCTCTTAAATAGGTATAAAGGTGGTAATGACTATGTTGCTTGGCATTCTGATGATGAAAAGGTTTATGGTTCTACTCCTGAAATTGCGTCCCTGTCCTTTGGATGCGAAAGGGAATTCTACTTGAAGAAGAAACCCGGTAAAACATCTCAAGAAAGAAAAAGTGATCAAGAAACTACAAGTAAGCGATTAAAGAGGAATCATGATGATCAGCACTCTTTCATGCTTAAGCATGGATCGCTCTTGGTGATGAGAGGTTATACTCAAAGGGATTGGATGCACTCTGTGCCTAAGCGCACAAAATTAGAGGCTACTCGTATCAACCTCACCTTCAGGCATGTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0008283 GO:0009451 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0032451 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035513 GO:0035515 GO:0035552 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:0140098 GO:1901360 GO:1990930

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

244

Amino Acids

28.31

Weight (kDa)

9.51

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	39 - 241	2.5e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260 AT2G22260
fragaria_vesca	FvH4_3g00300
malus_domestica	MD10G1339500.v1.1
prunus_persica	Prupe.4G003400_v2.0.a1 Prupe.4G003400_v2.0.a1
pyrus_communis	pycom10g28930
rosa_chinensis	RchiOBHm_Chr5g0000451
rosa_laevigata	RLG00000030868
rosa_multiflora	Rmu_sc0001680.1_g000001 Rmu_sc0003949.1_g000005 Rmu_sc0022667.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075710
rosa_rugosa	Rorug04G0383700
rosa_samantha	Rh5AG003700 Rh5BG004900 Rh5CG004000 Rh5DG003800
rosa_wichuraiana	Rw5G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	2 cut(s)	216, 631
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	703
AdeI	CACNNNGTG	1 cut(s)	673
AflII	CTTAAG	2 cut(s)	332, 614
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	382, 514
AjnI	CCWGG	2 cut(s)	188, 367
AluBI	AGCT	2 cut(s)	141, 362
AluI	AGCT	2 cut(s)	141, 362
Alw21I	GWGCWC	1 cut(s)	732
AlwI	GGATC	2 cut(s)	216, 631
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	372
ApoI	RAATTY	1 cut(s)	503
ArsI	GACNNNNNNTTYG	2 cut(s)	189, 221
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	684
AspS9I	GGNCC	2 cut(s)	192, 352
AsuC2I	CCSGG	2 cut(s)	264, 525
AsuHPI	GGTGA	3 cut(s)	31, 646, 706
AvaII	GGWCC	2 cut(s)	192, 352
BbsI	GAAGAC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	732
BbvI	GCAGC	1 cut(s)	384
BciT130I	CCWGG	2 cut(s)	190, 369
BciVI	GTATCC	1 cut(s)	284
BclI	TGATCA	2 cut(s)	553, 595
BcnI	CCSGG	2 cut(s)	264, 525
BfaI	CTAG	1 cut(s)	237
BfrI	CTTAAG	2 cut(s)	332, 614
BfuI	GTATCC	1 cut(s)	284
BisI	GCNGC	1 cut(s)	373
BlsI	GCNGC	1 cut(s)	374
Bme1390I	CCNGG	4 cut(s)	190, 264, 369, 525
Bme18I	GGWCC	2 cut(s)	192, 352
BmgT120I	GGNCC	2 cut(s)	192, 352
BmrFI	CCNGG	4 cut(s)	190, 264, 369, 525
BmsI	GCATC	2 cut(s)	482, 654
BpiI	GAAGAC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	79, 111
BpmI	CTGGAG	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	1 cut(s)	522
BpuMI	CCSGG	2 cut(s)	264, 525
BsaJI	CCNNGG	2 cut(s)	128, 188
BseBI	CCWGG	2 cut(s)	190, 369
BseDI	CCNNGG	2 cut(s)	128, 188
BseGI	GGATG	4 cut(s)	64, 322, 497, 669
BseRI	GAGGAG	2 cut(s)	100, 318
BseX3I	CGGCCG	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	384
Bsh1285I	CGRYCG	2 cut(s)	148, 220
BshFI	GGCC	1 cut(s)	219
BsiEI	CGRYCG	2 cut(s)	148, 220
BsiHKAI	GWGCWC	1 cut(s)	732
BsiSI	CCGG	2 cut(s)	263, 525
BslFI	GGGAC	2 cut(s)	279, 463
BsmFI	GGGAC	2 cut(s)	279, 463
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp143I	GATC	6 cut(s)	145, 221, 319, 553, 595, 623
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	589
BspPI	GGATC	2 cut(s)	216, 631
BspQI	GCTCTTC	1 cut(s)	369
BspTI	CTTAAG	2 cut(s)	332, 614
BssECI	CCNNGG	2 cut(s)	128, 188
BssMI	GATC	6 cut(s)	145, 221, 319, 553, 595, 623
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	2 cut(s)	190, 369
Bst4CI	ACNGT	2 cut(s)	68, 287
Bst6I	CTCTTC	2 cut(s)	71, 369
BstAFI	CTTAAG	2 cut(s)	332, 614
BstAPI	GCANNNNNTGC	1 cut(s)	673
BstDEI	CTNAG	1 cut(s)	678
BstF5I	GGATG	4 cut(s)	64, 322, 497, 669
BstHHI	GCGC	1 cut(s)	684
BstKTI	GATC	6 cut(s)	148, 224, 322, 556, 598, 626
BstMBI	GATC	6 cut(s)	145, 221, 319, 553, 595, 623
BstMCI	CGRYCG	2 cut(s)	148, 220
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 225, 625, 673
BstNI	CCWGG	2 cut(s)	190, 369
BstNSI	RCATGY	3 cut(s)	185, 249, 728
BstSCI	CCNGG	4 cut(s)	188, 262, 367, 523
BstV1I	GCAGC	1 cut(s)	384
BstV2I	GAAGAC	1 cut(s)	205
BstZI	CGGCCG	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	4 cut(s)	64, 322, 497, 669
BtsIMutI	CAGTG	1 cut(s)	292
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	1 cut(s)	684
Cfr13I	GGNCC	2 cut(s)	192, 352
CseI	GACGC	1 cut(s)	465
CviAII	CATG	8 cut(s)	182, 246, 302, 312, 590, 610, 620, 725
CviJI	RGCY	7 cut(s)	95, 141, 152, 219, 235, 362, 698
CviKI_1	RGCY	7 cut(s)	95, 141, 152, 219, 235, 362, 698
DdeI	CTNAG	1 cut(s)	678
DpnI	GATC	6 cut(s)	147, 223, 321, 555, 597, 625
DpnII	GATC	6 cut(s)	145, 221, 319, 553, 595, 623
DraIII	CACNNNGTG	1 cut(s)	673
EaeI	YGGCCR	1 cut(s)	217
EagI	CGGCCG	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	71, 369
EarI	CTCTTC	2 cut(s)	71, 369
EclXI	CGGCCG	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	192, 352
Eco52I	CGGCCG	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	703
EcoRI	GAATTC	1 cut(s)	503
EcoRII	CCWGG	2 cut(s)	188, 367
EcoT14I	CCWWGG	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	8 cut(s)	185, 249, 305, 315, 593, 613, 623, 728
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	2 cut(s)	279, 463
FatI	CATG	8 cut(s)	181, 245, 301, 311, 589, 609, 619, 724
FbaI	TGATCA	2 cut(s)	553, 595
Fnu4HI	GCNGC	1 cut(s)	373
FokI	GGATG	4 cut(s)	71, 329, 504, 676
Fsp4HI	GCNGC	1 cut(s)	373
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	683
GluI	GCNGC	1 cut(s)	373
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	2 cut(s)	263, 525
HgaI	GACGC	1 cut(s)	465
HhaI	GCGC	1 cut(s)	684
Hin1II	CATG	8 cut(s)	185, 249, 305, 315, 593, 613, 623, 728
Hin6I	GCGC	1 cut(s)	682
HinP1I	GCGC	1 cut(s)	682
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	2 cut(s)	124, 586
HpaII	CCGG	2 cut(s)	263, 525
HphI	GGTGA	3 cut(s)	31, 646, 706
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	439, 734
Hpy188III	TCNNGA	4 cut(s)	467, 539, 557, 590
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	727
HpyCH4III	ACNGT	2 cut(s)	68, 287
HpyCH4V	TGCA	2 cut(s)	257, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 225, 625, 673
HpyF3I	CTNAG	1 cut(s)	678
Hsp92II	CATG	8 cut(s)	185, 249, 305, 315, 593, 613, 623, 728
HspAI	GCGC	1 cut(s)	682
Ksp22I	TGATCA	2 cut(s)	553, 595
Kzo9I	GATC	6 cut(s)	145, 221, 319, 553, 595, 623
LguI	GCTCTTC	1 cut(s)	369
Lsp1109I	GCAGC	1 cut(s)	384
LweI	GCATC	2 cut(s)	482, 654
MaeI	CTAG	1 cut(s)	237
MalI	GATC	6 cut(s)	147, 223, 321, 555, 597, 625
MboI	GATC	6 cut(s)	145, 221, 319, 553, 595, 623
MboII	GAAGA	5 cut(s)	88, 205, 356, 526, 529
MfeI	CAATTG	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	732
MluCI	AATT	6 cut(s)	37, 157, 275, 471, 503, 689
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	4 cut(s)	333, 395, 578, 615
MslI	CAYNNNNRTG	1 cut(s)	438
MspCI	CTTAAG	2 cut(s)	332, 614
MspI	CCGG	2 cut(s)	263, 525
MspR9I	CCNGG	4 cut(s)	190, 264, 369, 525
MunI	CAATTG	1 cut(s)	275
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	2 cut(s)	190, 369
MwoI	GCNNNNNNNGC	4 cut(s)	108, 225, 625, 673
NciI	CCSGG	2 cut(s)	264, 525
NdeII	GATC	6 cut(s)	145, 221, 319, 553, 595, 623
NlaIII	CATG	8 cut(s)	185, 249, 305, 315, 593, 613, 623, 728
NspI	RCATGY	3 cut(s)	185, 249, 728
PagI	TCATGA	1 cut(s)	589
PciI	ACATGT	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	124, 586
PfoI	TCCNGGA	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	374
Ple19I	CGATCG	1 cut(s)	148
PscI	ACATGT	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	188, 367
PspGI	CCWGG	2 cut(s)	188, 367
PspPI	GGNCC	2 cut(s)	192, 352
PvuI	CGATCG	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	438
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	4 cut(s)	333, 395, 578, 615
SatI	GCNGC	1 cut(s)	373
Sau3AI	GATC	6 cut(s)	145, 221, 319, 553, 595, 623
Sau96I	GGNCC	2 cut(s)	192, 352
ScrFI	CCNGG	4 cut(s)	190, 264, 369, 525
SduI	GDGCHC	1 cut(s)	732
SfaNI	GCATC	2 cut(s)	482, 654
SinI	GGWCC	2 cut(s)	192, 352
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	3 cut(s)	332, 537, 614
SmoI	CTYRAG	3 cut(s)	332, 537, 614
Sse9I	AATT	6 cut(s)	37, 157, 275, 471, 503, 689
SsiI	CCGC	1 cut(s)	350
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	4 cut(s)	188, 262, 367, 523
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	68, 287
TaqI	TCGA	2 cut(s)	144, 165
TasI	AATT	6 cut(s)	37, 157, 275, 471, 503, 689
TfiI	GAWTC	2 cut(s)	124, 586
Tru1I	TTAA	4 cut(s)	333, 395, 578, 615
Tru9I	TTAA	4 cut(s)	333, 395, 578, 615
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	1 cut(s)	372
TspDTI	ATGAA	5 cut(s)	63, 124, 300, 459, 598
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	292
Vha464I	CTTAAG	2 cut(s)	332, 614
VpaK11BI	GGWCC	2 cut(s)	192, 352
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	3 cut(s)	185, 249, 728
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.