AT2G22430

homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007893
Physical Location & Seq
Reverse (-)
9525988 .. 9527845
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G22430.1

Sequence Viewer

Length: 936 bp
ATGATGAAGAGATTAAGTAGTTCAGATTCAGTGGGTGGTCTCATCTCTTTATGTCCTACAACTTCCACAGATGAGCAGAGTCCGAGGAGATACGGTGGGAGAGAGTTTCAGTCGATGCTTGAAGGATACGAGGAAGAAGAAGAAGCTATAGTAGAAGAAAGAGGACACGTGGGCTTGTCGGAGAAGAAGAGAAGGTTAAGCATTAACCAAGTTAAAGCTTTGGAGAAGAATTTTGAGTTAGAGAATAAGCTTGAGCCTGAGAGGAAAGTTAAGTTAGCTCAAGAACTTGGTCTTCAACCTCGTCAAGTTGCTGTTTGGTTTCAAAACCGTCGTGCTCGGTGGAAGACAAAACAGCTTGAGAAAGATTACGGTGTTCTTAAAACCCAGTACGATTCTCTCCGTCATAACTTTGATTCCCTCCGCCGTGACAATGAATCTCTCCTTCAAGAGATTAGTAAACTGAAAACGAAGCTTAATGGAGGAGGAGGAGAAGAAGAAGAAGAAGAGAACAACGCGGCGGTGACAACGGAGAGTGATATTTCGGTCAAGGAGGAAGAAGTTTCGTTGCCGGAGAAGATTACAGAGGCACCGTCGTCTCCTCCACAGTTTCTTGAACATTCTGATGGTCTTAATTACCGGAGTTTCACAGATCTACGTGATCTTCTTCCATTAAAGGCGGCGGCTTCTTCATTCGCCGCCGCAGCTGGATCTTCAGACAGTAGCGATTCAAGCGCTCTGCTGAATGAAGAAAGCAGCTCTAATGTCACTGTGGCGGCTCCGGTGACGGTTCCAGGAGGTAATTTCTTCCAGTTTGTGAAAATGGAGCAGACGGAGGATCATGAGGACTTTCTGAGTGGAGAAGAAGCTTGTGAATTCTTTTCCGATGAACAACCGCCGTCTCTACACTGGTACTCCACCGTTGATCATTGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0040008 GO:0040034 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HALZ Homeobox

Protein Analysis

311

Amino Acids

35.02

Weight (kDa)

4.76

Isoelectric Point (pI)

72.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 62 - 115 2.3e-16 Homeodomain
HALZ PF02183 117 - 158 7.1e-17 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 586
AccII CGCG 1 cut(s) 515
AciI CCGC 9 cut(s) 421, 515, 518, 677, 680, 696, 699, 773, 893
AclWI GGATC 2 cut(s) 715, 843
AcsI RAATTY 2 cut(s) 229, 872
AcuI CTGAAG 1 cut(s) 696
AcvI CACGTG 1 cut(s) 169
AfaI GTAC 2 cut(s) 389, 911
AfeI AGCGCT 1 cut(s) 733
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 6 cut(s) 122, 296, 323, 446, 614, 729
AjnI CCWGG 1 cut(s) 790
AluBI AGCT 9 cut(s) 146, 218, 250, 278, 355, 472, 704, 756, 866
AluI AGCT 9 cut(s) 146, 218, 250, 278, 355, 472, 704, 756, 866
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 3 cut(s) 44, 600, 903
AlwI GGATC 2 cut(s) 715, 843
Aor51HI AGCGCT 1 cut(s) 733
ApeKI GCWGC 2 cut(s) 701, 753
ApoI RAATTY 2 cut(s) 229, 872
AspLEI GCGC 1 cut(s) 734
AsuHPI GGTGA 2 cut(s) 532, 793
BanI GGYRCC 1 cut(s) 586
BbrPI CACGTG 1 cut(s) 169
BbsI GAAGAC 2 cut(s) 284, 350
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 2 cut(s) 713, 765
BccI CCATC 1 cut(s) 617
BceAI ACGGC 2 cut(s) 408, 880
BciT130I CCWGG 1 cut(s) 792
BciVI GTATCC 1 cut(s) 119
BclI TGATCA 1 cut(s) 922
BcoDI GTCTC 3 cut(s) 44, 600, 903
BfmI CTRYAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 735
BfuI GTATCC 1 cut(s) 119
BglII AGATCT 1 cut(s) 649
BisI GCNGC 8 cut(s) 516, 678, 681, 696, 699, 702, 754, 774
BlsI GCNGC 8 cut(s) 517, 679, 682, 697, 700, 703, 755, 775
Bme1390I CCNGG 1 cut(s) 792
BmiI GGNNCC 3 cut(s) 588, 777, 789
BmrFI CCNGG 1 cut(s) 792
BmrI ACTGGG 1 cut(s) 379
BmsI GCATC 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 379
BpiI GAAGAC 2 cut(s) 284, 350
BpuEI CTTGAG 3 cut(s) 264, 272, 377
BsaAI YACGTR 2 cut(s) 169, 656
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 83
BsaWI WCCGGW 2 cut(s) 636, 778
BsaXI ACNNNNNCTCC 4 cut(s) 79, 109, 896, 926
Bse1I ACTGG 3 cut(s) 385, 808, 911
BseBI CCWGG 1 cut(s) 792
BseDI CCNNGG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 249, 842
BseNI ACTGG 3 cut(s) 385, 808, 911
BseRI GAGGAG 5 cut(s) 100, 495, 498, 501, 588
BseXI GCAGC 2 cut(s) 713, 765
Bsh1236I CGCG 1 cut(s) 515
BshNI GGYRCC 1 cut(s) 586
BsiHKAI GWGCWC 1 cut(s) 337
BsiSI CCGG 3 cut(s) 569, 637, 779
BsmAI GTCTC 3 cut(s) 44, 600, 903
BsmBI CGTCTC 2 cut(s) 600, 903
Bso31I GGTCTC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 5 cut(s) 649, 658, 707, 835, 922
BspACI CCGC 9 cut(s) 421, 515, 518, 677, 680, 696, 699, 773, 893
BspCNI CTCAG 2 cut(s) 250, 843
BspFNI CGCG 1 cut(s) 515
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 3 cut(s) 588, 777, 789
BspPI GGATC 2 cut(s) 715, 843
BspT107I GGYRCC 1 cut(s) 586
BspTNI GGTCTC 1 cut(s) 44
BsrI ACTGG 3 cut(s) 385, 808, 911
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 5 cut(s) 649, 658, 707, 835, 922
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 9 cut(s) 95, 329, 371, 591, 606, 719, 769, 787, 919
Bst6I CTCTTC 3 cut(s) 2, 182, 498
BstBAI YACGTR 2 cut(s) 169, 656
BstDEI CTNAG 2 cut(s) 258, 851
BstFNI CGCG 1 cut(s) 515
BstH2I RGCGCY 1 cut(s) 735
BstHHI GCGC 1 cut(s) 734
BstKTI GATC 5 cut(s) 652, 661, 710, 838, 925
BstMAI GTCTC 3 cut(s) 44, 600, 903
BstMBI GATC 5 cut(s) 649, 658, 707, 835, 922
BstMWI GCNNNNNNNGC 2 cut(s) 701, 729
BstNI CCWGG 1 cut(s) 792
BstSCI CCNGG 1 cut(s) 790
BstSFI CTRYAG 1 cut(s) 147
BstUI CGCG 1 cut(s) 515
BstV1I GCAGC 2 cut(s) 713, 765
BstV2I GAAGAC 2 cut(s) 284, 350
BstX2I RGATCY 2 cut(s) 649, 707
BstYI RGATCY 2 cut(s) 649, 707
BsuI GTATCC 1 cut(s) 119
BtsIMutI CAGTG 3 cut(s) 36, 765, 904
CciI TCATGA 1 cut(s) 838
CfoI GCGC 1 cut(s) 734
Csp6I GTAC 2 cut(s) 388, 910
CviAII CATG 1 cut(s) 839
CviQI GTAC 2 cut(s) 388, 910
DdeI CTNAG 2 cut(s) 258, 851
DpnI GATC 5 cut(s) 651, 660, 709, 837, 924
DpnII GATC 5 cut(s) 649, 658, 707, 835, 922
Eam1104I CTCTTC 3 cut(s) 2, 182, 498
EarI CTCTTC 3 cut(s) 2, 182, 498
EciI GGCGGA 1 cut(s) 410
Eco31I GGTCTC 1 cut(s) 44
Eco47III AGCGCT 1 cut(s) 733
Eco57I CTGAAG 1 cut(s) 696
Eco72I CACGTG 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 872
EcoRII CCWGG 1 cut(s) 790
Esp3I CGTCTC 2 cut(s) 600, 903
FaeI CATG 1 cut(s) 842
FaiI YATR 4 cut(s) 52, 149, 405, 840
FatI CATG 1 cut(s) 838
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 8 cut(s) 516, 678, 681, 696, 699, 702, 754, 774
Fsp4HI GCNGC 8 cut(s) 516, 678, 681, 696, 699, 702, 754, 774
GlaI GCGC 1 cut(s) 733
GluI GCNGC 8 cut(s) 516, 678, 681, 696, 699, 702, 754, 774
HaeII RGCGCY 1 cut(s) 735
HapII CCGG 3 cut(s) 569, 637, 779
HhaI GCGC 1 cut(s) 734
Hin1II CATG 1 cut(s) 842
Hin6I GCGC 1 cut(s) 732
HinP1I GCGC 1 cut(s) 732
HindIII AAGCTT 4 cut(s) 216, 248, 470, 864
HinfI GANTC 6 cut(s) 26, 79, 392, 413, 434, 725
HpaII CCGG 3 cut(s) 569, 637, 779
HphI GGTGA 2 cut(s) 532, 793
Hpy166II GTNNAC 1 cut(s) 458
Hpy188I TCNGA 7 cut(s) 25, 84, 181, 622, 715, 852, 883
Hpy188III TCNNGA 4 cut(s) 281, 446, 611, 839
Hpy8I GTNNAC 1 cut(s) 458
Hpy99I CGWCG 2 cut(s) 333, 595
HpyAV CCTTC 3 cut(s) 116, 186, 452
HpyCH4III ACNGT 9 cut(s) 95, 329, 371, 591, 606, 719, 769, 787, 919
HpyCH4IV ACGT 2 cut(s) 168, 655
HpyF10VI GCNNNNNNNGC 2 cut(s) 701, 729
HpyF3I CTNAG 2 cut(s) 258, 851
HpySE526I ACGT 2 cut(s) 168, 655
Hsp92II CATG 1 cut(s) 842
HspAI GCGC 1 cut(s) 732
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 5 cut(s) 649, 658, 707, 835, 922
LmnI GCTCC 2 cut(s) 781, 823
Lsp1109I GCAGC 2 cut(s) 713, 765
LweI GCATC 1 cut(s) 105
MaeII ACGT 2 cut(s) 168, 655
MaeIII GTNAC 4 cut(s) 425, 520, 763, 781
MalI GATC 5 cut(s) 651, 660, 709, 837, 924
MboI GATC 5 cut(s) 649, 658, 707, 835, 922
MflI RGATCY 2 cut(s) 649, 707
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 5 cut(s) 229, 631, 799, 872, 931
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 159
MseI TTAA 9 cut(s) 14, 197, 204, 213, 270, 378, 474, 630, 671
MslI CAYNNNNRTG 1 cut(s) 621
MspA1I CMGCKG 1 cut(s) 704
MspI CCGG 3 cut(s) 569, 637, 779
MspR9I CCNGG 1 cut(s) 792
MvaI CCWGG 1 cut(s) 792
MvnI CGCG 1 cut(s) 515
MwoI GCNNNNNNNGC 2 cut(s) 701, 729
NdeII GATC 5 cut(s) 649, 658, 707, 835, 922
NlaIII CATG 1 cut(s) 842
NlaIV GGNNCC 3 cut(s) 588, 777, 789
NmuCI GTSAC 4 cut(s) 425, 520, 763, 781
PagI TCATGA 1 cut(s) 838
PfeI GAWTC 5 cut(s) 26, 392, 413, 434, 725
PfoI TCCNGGA 1 cut(s) 790
PkrI GCNGC 8 cut(s) 517, 679, 682, 697, 700, 703, 755, 775
PleI GAGTC 1 cut(s) 87
PmaCI CACGTG 1 cut(s) 169
PmlI CACGTG 1 cut(s) 169
PpsI GAGTC 1 cut(s) 87
Ppu21I YACGTR 2 cut(s) 169, 656
Psp6I CCWGG 1 cut(s) 790
PspCI CACGTG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 790
PspN4I GGNNCC 3 cut(s) 588, 777, 789
PsuI RGATCY 2 cut(s) 649, 707
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 2 cut(s) 389, 911
RsaNI GTAC 2 cut(s) 388, 910
RseI CAYNNNNRTG 1 cut(s) 621
SaqAI TTAA 9 cut(s) 14, 197, 204, 213, 270, 378, 474, 630, 671
SatI GCNGC 8 cut(s) 516, 678, 681, 696, 699, 702, 754, 774
Sau3AI GATC 5 cut(s) 649, 658, 707, 835, 922
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 792
SduI GDGCHC 1 cut(s) 337
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 3 cut(s) 251, 279, 356
SmoI CTYRAG 3 cut(s) 251, 279, 356
Sse9I AATT 5 cut(s) 229, 631, 799, 872, 931
SsiI CCGC 9 cut(s) 421, 515, 518, 677, 680, 696, 699, 773, 893
StyD4I CCNGG 1 cut(s) 790
TaaI ACNGT 9 cut(s) 95, 329, 371, 591, 606, 719, 769, 787, 919
TaiI ACGT 2 cut(s) 171, 658
TaqI TCGA 1 cut(s) 113
TaqII GACCGA 1 cut(s) 532
TasI AATT 5 cut(s) 229, 631, 799, 872, 931
TauI GCSGC 6 cut(s) 518, 680, 683, 698, 701, 776
TfiI GAWTC 5 cut(s) 26, 392, 413, 434, 725
Tru1I TTAA 9 cut(s) 14, 197, 204, 213, 270, 378, 474, 630, 671
Tru9I TTAA 9 cut(s) 14, 197, 204, 213, 270, 378, 474, 630, 671
TscAI CASTG 3 cut(s) 36, 772, 911
TseFI GTSAC 4 cut(s) 425, 520, 763, 781
TseI GCWGC 2 cut(s) 701, 753
Tsp45I GTSAC 4 cut(s) 425, 520, 763, 781
TspDTI ATGAA 5 cut(s) 20, 447, 678, 759, 900
TspGWI ACGGA 3 cut(s) 389, 542, 845
TspRI CASTG 3 cut(s) 36, 772, 911
XapI RAATTY 2 cut(s) 229, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.