Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007893

Physical Location & Seq

Genomic Coordinates Reverse (-)

26101818 .. 26104614

Gene Structure 2797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAAGAGATCACGTGGAAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGACAAACAAATAAGCCCAAGACCAACAACTACCGGCTTTCTCTATTCCGGCGCCGGAGACTACTCCCAGATGTTTGACGCATTAGAAGACGACGGAAGTCTAGAGGACCTCGGCGGCGTTGGACACGCGTCTTCTACGGCGGCGGAGAAAAAACGGCGGTTGGGTGTAGAGCAAGTGAAAGCGTTAGAGAAGAATTTCGAGATTGATAACAAGTTAGAGCCAGAGAGGAAAGTGAAGCTGGCTCAAGAGCTTGGGTTGCAGCCACGCCAAGTCGCGATCTGGTTTCAAAACCGCCGTGCTCGGTGGAAGACAAAGCAGCTTGAACGTGATTACGGCGTTCTTAAGTCAAACTTTGATGCACTCAAACGCAACCGCGACTCGCTTCAACGCGATAACGATTCACTCCTTGGACAGATTAAAGAGCTGAAAGCAAAACTTAACGTGGAAGGGGTTAAAGGTATAGAAGAGAACGGCGCTTTAAAAGCAGTGGAAGCAAATCAATCGGTGATGGCTAATAATGAAGTCTTAGAGCTAAGCCACCGTTCTCCATCGCCACCACCGCATATTCCTACGGACGCTCCGACATCGGAGCTCGCATTCGAAATGTTTAGCATTTTTCCACGCACGGAAAACTTCAGAGACGATCCTGCCGATAGCAGCGACTCAAGCGCGGTTTTGAACGAAGAGTATAGTCCCAATACGGTTGAAGCAGCTGGCGCAGTGGCGGCCACGACTGTAGAAATGTCGACGATGGGTTGTTTTAGCCAATTCGTGAAAATGGAAGAGCATGAAGATCTGTTTAGTGGAGAGGAAGCTTGCAAGTTGTTTGCGGACAATGAGCAATGGTATTGCTCCGATCAGTGGAATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0040008 GO:0040034 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046983 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

312

Amino Acids

34.79

Weight (kDa)

5.02

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	54 - 107	8.4e-17	Homeodomain
HALZ	PF02183	109 - 150	2.4e-16	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22430 AT4G40060 AT5G65310 AT5G65310
fragaria_vesca	FvH4_1g20230 FvH4_1g20230
malus_domestica	MD01G1036200.v1.1 MD15G1101700.v1.1 MD15G1319800.v1.1
prunus_persica	Prupe.6G193400_v2.0.a1 Prupe.6G193400_v2.0.a1
pyrus_communis	pycom01g06310 pycom15g28110
rosa_chinensis	RchiOBHm_Chr2g0112311
rosa_laevigata	RLG00000017970
rosa_multiflora	Rmu_sc0004467.1_g000045
rosa_roxburghii	Rroxscaffold_2G00131510
rosa_rugosa	Rorug02G0179900.1 Rorug02G0180000
rosa_samantha	Rh2AG232800 Rh2BG246100 Rh2CG236800 Rh2DG240400
rosa_wichuraiana	Rw2G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	812
AccII	CGCG	5 cut(s)	194, 341, 441, 456, 737
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	2 cut(s)	259, 931
AcuI	CTGAAG	1 cut(s)	685
AcvI	CACGTG	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	927
AflII	CTTAAG	1 cut(s)	407
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	5 cut(s)	353, 389, 452, 745, 773
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	9 cut(s)	21, 304, 316, 385, 490, 598, 658, 779, 881
AluI	AGCT	9 cut(s)	21, 304, 316, 385, 490, 598, 658, 779, 881
Alw21I	GWGCWC	2 cut(s)	367, 660
Alw26I	GTCTC	2 cut(s)	117, 699
AlwI	GGATC	1 cut(s)	704
AoxI	GGCC	1 cut(s)	792
ApeKI	GCWGC	4 cut(s)	325, 382, 723, 776
ApoI	RAATTY	2 cut(s)	259, 931
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	4 cut(s)	119, 542, 737, 785
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	583
AsuII	TTCGAA	1 cut(s)	666
AvaII	GGWCC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	660
BbrPI	CACGTG	1 cut(s)	14
BbsI	GAAGAC	3 cut(s)	159, 189, 380
Bbv12I	GWGCWC	2 cut(s)	367, 660
BbvI	GCAGC	4 cut(s)	337, 394, 735, 788
BccI	CCATC	3 cut(s)	568, 622, 811
BceAI	ACGGC	5 cut(s)	219, 236, 345, 415, 553
BcgI	CGANNNNNNTGC	2 cut(s)	549, 583
BcoDI	GTCTC	2 cut(s)	117, 699
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	801
BfoI	RGCGCY	2 cut(s)	120, 543
BfrI	CTTAAG	1 cut(s)	407
BglII	AGATCT	1 cut(s)	859
BisI	GCNGC	7 cut(s)	181, 207, 326, 383, 724, 777, 792
BlpI	GCTNAGC	1 cut(s)	599
BlsI	GCNGC	7 cut(s)	182, 208, 327, 384, 725, 778, 793
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	412
BoxI	GACNNNNGTC	2 cut(s)	162, 193
BpiI	GAAGAC	3 cut(s)	159, 189, 380
Bpu1102I	GCTNAGC	1 cut(s)	599
Bpu14I	TTCGAA	1 cut(s)	666
BpuEI	CTTGAG	2 cut(s)	294, 715
BsaAI	YACGTR	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	175, 472
BsaWI	WCCGGW	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	927
Bse118I	RCCGGY	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	914
BseDI	CCNNGG	2 cut(s)	175, 472
BseLI	CCNNNNNNNGG	1 cut(s)	927
BseMI	GCAATG	1 cut(s)	914
BseXI	GCAGC	4 cut(s)	337, 394, 735, 788
Bsh1236I	CGCG	5 cut(s)	194, 341, 441, 456, 737
BshFI	GGCC	1 cut(s)	794
BshNI	GGYRCC	1 cut(s)	116
BsiHKAI	GWGCWC	2 cut(s)	367, 660
BsiSI	CCGG	4 cut(s)	36, 99, 114, 120
BslFI	GGGAC	1 cut(s)	744
BslI	CCNNNNNNNGG	1 cut(s)	927
BsmAI	GTCTC	2 cut(s)	117, 699
BsmBI	CGTCTC	1 cut(s)	699
BsmFI	GGGAC	1 cut(s)	744
BsmI	GAATGC	1 cut(s)	662
BsnI	GGCC	1 cut(s)	794
Bsp119I	TTCGAA	1 cut(s)	666
Bsp1286I	GDGCHC	2 cut(s)	367, 660
Bsp143I	GATC	5 cut(s)	8, 342, 709, 859, 922
Bsp1720I	GCTNAGC	1 cut(s)	599
Bsp68I	TCGCGA	1 cut(s)	341
BspANI	GGCC	1 cut(s)	794
BspFNI	CGCG	5 cut(s)	194, 341, 441, 456, 737
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	704
BspQI	GCTCTTC	1 cut(s)	843
BspT104I	TTCGAA	1 cut(s)	666
BspT107I	GGYRCC	1 cut(s)	116
BspTI	CTTAAG	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	914
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	175, 472
BssMI	GATC	5 cut(s)	8, 342, 709, 859, 922
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	472
Bst4CI	ACNGT	3 cut(s)	608, 769, 802
Bst6I	CTCTTC	3 cut(s)	525, 744, 843
BstACI	GRCGYC	1 cut(s)	117
BstAFI	CTTAAG	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	14
BstBI	TTCGAA	1 cut(s)	666
BstC8I	GCNNGC	4 cut(s)	306, 660, 781, 883
BstDEI	CTNAG	2 cut(s)	592, 599
BstFNI	CGCG	5 cut(s)	194, 341, 441, 456, 737
BstH2I	RGCGCY	2 cut(s)	120, 543
BstHHI	GCGC	4 cut(s)	119, 542, 737, 785
BstKTI	GATC	5 cut(s)	11, 345, 712, 862, 925
BstMAI	GTCTC	2 cut(s)	117, 699
BstMBI	GATC	5 cut(s)	8, 342, 709, 859, 922
BstMWI	GCNNNNNNNGC	7 cut(s)	322, 548, 557, 625, 732, 782, 791
BstPAI	GACNNNNGTC	2 cut(s)	162, 193
BstSFI	CTRYAG	1 cut(s)	801
BstUI	CGCG	5 cut(s)	194, 341, 441, 456, 737
BstV1I	GCAGC	4 cut(s)	337, 394, 735, 788
BstV2I	GAAGAC	3 cut(s)	159, 189, 380
BstX2I	RGATCY	1 cut(s)	859
BstYI	RGATCY	1 cut(s)	859
BsuRI	GGCC	1 cut(s)	794
BtgZI	GCGATG	1 cut(s)	600
BtsI	GCAGTG	2 cut(s)	558, 792
BtsIMutI	CAGTG	3 cut(s)	558, 792, 932
BtuMI	TCGCGA	1 cut(s)	341
Cac8I	GCNNGC	4 cut(s)	306, 660, 781, 883
CfoI	GCGC	4 cut(s)	119, 542, 737, 785
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	3 cut(s)	152, 183, 650
CviAII	CATG	1 cut(s)	854
DdeI	CTNAG	2 cut(s)	592, 599
DinI	GGCGCC	1 cut(s)	118
DpnI	GATC	5 cut(s)	10, 344, 711, 861, 924
DpnII	GATC	5 cut(s)	8, 342, 709, 859, 922
DraI	TTTAAA	1 cut(s)	546
EaeI	YGGCCR	1 cut(s)	792
Eam1104I	CTCTTC	3 cut(s)	525, 744, 843
EarI	CTCTTC	3 cut(s)	525, 744, 843
EciI	GGCGGA	1 cut(s)	224
Ecl136II	GAGCTC	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	685
Eco72I	CACGTG	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	931
EcoT14I	CCWWGG	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	660
EgeI	GGCGCC	1 cut(s)	118
EheI	GGCGCC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	472
Esp3I	CGTCTC	1 cut(s)	699
FaeI	CATG	1 cut(s)	857
FaiI	YATR	4 cut(s)	527, 630, 756, 855
FalI	AAGNNNNNCTT	4 cut(s)	401, 433, 486, 518
FaqI	GGGAC	1 cut(s)	744
FatI	CATG	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	812
Fnu4HI	GCNGC	7 cut(s)	181, 207, 326, 383, 724, 777, 792
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	7 cut(s)	181, 207, 326, 383, 724, 777, 792
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	4 cut(s)	118, 541, 736, 784
GluI	GCNGC	7 cut(s)	181, 207, 326, 383, 724, 777, 792
HaeII	RGCGCY	2 cut(s)	120, 543
HaeIII	GGCC	1 cut(s)	794
HapII	CCGG	4 cut(s)	36, 99, 114, 120
HgaI	GACGC	3 cut(s)	152, 183, 650
HhaI	GCGC	4 cut(s)	119, 542, 737, 785
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	857
Hin6I	GCGC	4 cut(s)	117, 540, 735, 783
HinP1I	GCGC	4 cut(s)	117, 540, 735, 783
HincII	GTYRAC	1 cut(s)	813
HindII	GTYRAC	1 cut(s)	813
HindIII	AAGCTT	1 cut(s)	879
HinfI	GANTC	4 cut(s)	26, 443, 464, 728
HpaII	CCGG	4 cut(s)	36, 99, 114, 120
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	1 cut(s)	813
Hpy188I	TCNGA	5 cut(s)	25, 648, 655, 704, 922
Hpy188III	TCNNGA	5 cut(s)	167, 265, 311, 340, 838
Hpy8I	GTNNAC	1 cut(s)	813
Hpy99I	CGWCG	2 cut(s)	161, 817
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	3 cut(s)	608, 769, 802
HpyCH4IV	ACGT	3 cut(s)	13, 391, 507
HpyCH4V	TGCA	3 cut(s)	325, 425, 885
HpyF10VI	GCNNNNNNNGC	7 cut(s)	322, 548, 557, 625, 732, 782, 791
HpyF3I	CTNAG	2 cut(s)	592, 599
HpySE526I	ACGT	3 cut(s)	13, 391, 507
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	857
HspAI	GCGC	4 cut(s)	117, 540, 735, 783
KasI	GGCGCC	1 cut(s)	116
Kzo9I	GATC	5 cut(s)	8, 342, 709, 859, 922
LguI	GCTCTTC	1 cut(s)	843
LmnI	GCTCC	4 cut(s)	26, 649, 655, 923
Lsp1109I	GCAGC	4 cut(s)	337, 394, 735, 788
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	3 cut(s)	13, 391, 507
MalI	GATC	5 cut(s)	10, 344, 711, 861, 924
MboI	GATC	5 cut(s)	8, 342, 709, 859, 922
MboII	GAAGA	9 cut(s)	16, 164, 189, 268, 385, 542, 761, 860, 869
MflI	RGATCY	1 cut(s)	859
MhlI	GDGCHC	2 cut(s)	367, 660
MluCI	AATT	4 cut(s)	48, 259, 833, 931
MluI	ACGCGT	1 cut(s)	192
Mly113I	GGCGCC	1 cut(s)	117
MlyI	GAGTC	2 cut(s)	437, 722
MmeI	TCCRAC	2 cut(s)	166, 671
MnlI	CCTC	4 cut(s)	163, 185, 285, 868
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	5 cut(s)	408, 483, 504, 519, 545
MspA1I	CMGCKG	1 cut(s)	779
MspCI	CTTAAG	1 cut(s)	407
MspI	CCGG	4 cut(s)	36, 99, 114, 120
Mva1269I	GAATGC	1 cut(s)	662
MvnI	CGCG	5 cut(s)	194, 341, 441, 456, 737
MwoI	GCNNNNNNNGC	7 cut(s)	322, 548, 557, 625, 732, 782, 791
NarI	GGCGCC	1 cut(s)	117
NdeII	GATC	5 cut(s)	8, 342, 709, 859, 922
NlaIII	CATG	1 cut(s)	857
NlaIV	GGNNCC	1 cut(s)	118
NmeAIII	GCCGAG	1 cut(s)	156
NruI	TCGCGA	1 cut(s)	341
NspV	TTCGAA	1 cut(s)	666
PciSI	GCTCTTC	1 cut(s)	843
PcsI	WCGNNNNNNNCGW	2 cut(s)	644, 714
PctI	GAATGC	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	26, 464
PkrI	GCNGC	7 cut(s)	182, 208, 327, 384, 725, 778, 793
PleI	GAGTC	2 cut(s)	437, 722
PluTI	GGCGCC	1 cut(s)	120
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	2 cut(s)	437, 722
Ppu21I	YACGTR	1 cut(s)	14
PpuMI	RGGWCCY	1 cut(s)	172
PshAI	GACNNNNGTC	2 cut(s)	162, 193
Psp124BI	GAGCTC	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	172
PspCI	CACGTG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	172
PspPPI	RGGWCCY	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	859
PvuII	CAGCTG	1 cut(s)	779
RruI	TCGCGA	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	660
SalI	GTCGAC	1 cut(s)	811
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	5 cut(s)	408, 483, 504, 519, 545
SatI	GCNGC	7 cut(s)	181, 207, 326, 383, 724, 777, 792
Sau3AI	GATC	5 cut(s)	8, 342, 709, 859, 922
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	2 cut(s)	437, 722
SduI	GDGCHC	2 cut(s)	367, 660
SfaNI	GCATC	1 cut(s)	412
SfcI	CTRYAG	1 cut(s)	801
SfoI	GGCGCC	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	666
SinI	GGWCC	1 cut(s)	172
SmlI	CTYRAG	3 cut(s)	309, 407, 730
SmoI	CTYRAG	3 cut(s)	309, 407, 730
Sse9I	AATT	4 cut(s)	48, 259, 833, 931
SspDI	GGCGCC	1 cut(s)	116
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	660
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	3 cut(s)	608, 769, 802
TaiI	ACGT	3 cut(s)	16, 394, 510
TaqI	TCGA	3 cut(s)	264, 666, 812
TasI	AATT	4 cut(s)	48, 259, 833, 931
TauI	GCSGC	3 cut(s)	183, 209, 794
TfiI	GAWTC	2 cut(s)	26, 464
Tru1I	TTAA	5 cut(s)	408, 483, 504, 519, 545
Tru9I	TTAA	5 cut(s)	408, 483, 504, 519, 545
TscAI	CASTG	3 cut(s)	558, 792, 932
TseI	GCWGC	4 cut(s)	325, 382, 723, 776
TspDTI	ATGAA	3 cut(s)	17, 600, 870
TspGWI	ACGGA	3 cut(s)	174, 653, 707
TspRI	CASTG	3 cut(s)	558, 792, 932
Vha464I	CTTAAG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	2 cut(s)	259, 931
XbaI	TCTAGA	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	812
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.