Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007893

Physical Location & Seq

Genomic Coordinates Reverse (-)

7168510 .. 7169136

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1101700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCATGCAAACGACACTGTCAAGCGGAACTACGATACCCTTCAACATGACAATGATGCCCTTCTCAAGGAAATAAAGCAATTGAAGGCAAAGTTGCAAGAAGATAACGCAGGGAGCAAGAATCCCACCGGGAAAGAAGAGCAACTCTTGGGAAAAGATCAGAGTTACAAAGTGGTTCAGGAGCGGAGCCAGTCACCGCCACCGCCTCCGGGATCCTCTGCTCCAGAAACAGAGTGTAACGAGCTCAACTTTGAGAGCTTCAACAACACAAGTGGAGTACTAGAAACCGTCTCATTGTTCCCAGATTTCAAAGATAGCTCTTCAGACAGTGACTCGAGTGCGATCTTGAACGAAGATAACAGTCCAAACTTGACTATGTCTTCATCTGGCATCCTTCAAAACCATCAGCTGATCAGGTCTCCGGCCTCCACTTCACTCAAATTCAACTGCTCCTCGTCCTCCTCGCCGTCATCATCGTCGATGAATTGCTTTCCGTTCCAGAAGAGCTACCAGCCTTTGGTGAAGGTAGAGGAGCACAATTTCTTTAGCAGTGAGGAGGCCTGTAACTTCTTCTCCGATGAGCAAGCACCTTCACTTCAGTGGTACTGTCCTGATCAGTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0040008 GO:0040034 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046983 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

209

Amino Acids

23.09

Weight (kDa)

4.63

Isoelectric Point (pI)

82.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22430 AT4G40060 AT5G65310 AT5G65310
fragaria_vesca	FvH4_1g20230 FvH4_1g20230
malus_domestica	MD01G1036200.v1.1 MD15G1101700.v1.1 MD15G1319800.v1.1
prunus_persica	Prupe.6G193400_v2.0.a1 Prupe.6G193400_v2.0.a1
pyrus_communis	pycom01g06310 pycom15g28110
rosa_chinensis	RchiOBHm_Chr2g0112311
rosa_laevigata	RLG00000017970
rosa_multiflora	Rmu_sc0004467.1_g000045
rosa_roxburghii	Rroxscaffold_2G00131510
rosa_rugosa	Rorug02G0179900.1 Rorug02G0180000
rosa_samantha	Rh2AG232800 Rh2BG246100 Rh2CG236800 Rh2DG240400
rosa_wichuraiana	Rw2G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	517
AccBSI	CCGCTC	1 cut(s)	184
AciI	CCGC	4 cut(s)	25, 184, 197, 203
AclWI	GGATC	2 cut(s)	207, 220
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	2 cut(s)	306, 581
AfaI	GTAC	2 cut(s)	279, 605
AfiI	CCNNNNNNNGG	3 cut(s)	67, 209, 517
AgsI	TTSAA	7 cut(s)	44, 85, 262, 310, 349, 398, 445
AleI	CACNNNNGTG	1 cut(s)	598
AluBI	AGCT	6 cut(s)	244, 258, 318, 409, 507, 624
AluI	AGCT	6 cut(s)	244, 258, 318, 409, 507, 624
Alw21I	GWGCWC	2 cut(s)	246, 537
Alw26I	GTCTC	2 cut(s)	295, 423
AlwI	GGATC	2 cut(s)	207, 220
Ama87I	CYCGRG	1 cut(s)	334
AoxI	GGCC	2 cut(s)	423, 558
ApoI	RAATTY	1 cut(s)	440
AsuC2I	CCSGG	2 cut(s)	130, 210
AsuHPI	GGTGA	2 cut(s)	186, 532
AvaI	CYCGRG	1 cut(s)	334
BamHI	GGATCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	246, 537
BccI	CCATC	1 cut(s)	411
BceAI	ACGGC	1 cut(s)	451
BclI	TGATCA	2 cut(s)	411, 613
BcnI	CCSGG	2 cut(s)	130, 210
BcoDI	GTCTC	2 cut(s)	295, 423
BfaI	CTAG	1 cut(s)	281
BmcAI	AGTACT	1 cut(s)	279
Bme1390I	CCNGG	2 cut(s)	130, 210
BmeT110I	CYCGRG	1 cut(s)	334
BmiI	GGNNCC	2 cut(s)	188, 214
BmrFI	CCNGG	2 cut(s)	130, 210
BmsI	GCATC	2 cut(s)	46, 399
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	2 cut(s)	130, 210
BsaI	GGTCTC	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 209, 517
Bse1I	ACTGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	3 cut(s)	67, 209, 517
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	4 cut(s)	442, 451, 545, 569
BshFI	GGCC	2 cut(s)	425, 560
BsiHKAI	GWGCWC	2 cut(s)	246, 537
BsiHKCI	CYCGRG	1 cut(s)	334
BsiSI	CCGG	3 cut(s)	129, 209, 422
BslI	CCNNNNNNNGG	3 cut(s)	67, 209, 517
BsmAI	GTCTC	2 cut(s)	295, 423
BsmBI	CGTCTC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	425, 560
Bso31I	GGTCTC	1 cut(s)	423
BsoBI	CYCGRG	1 cut(s)	334
Bsp1286I	GDGCHC	2 cut(s)	246, 537
Bsp143I	GATC	5 cut(s)	157, 212, 342, 411, 613
BspACI	CCGC	4 cut(s)	25, 184, 197, 203
BspANI	GGCC	2 cut(s)	425, 560
BspLI	GGNNCC	2 cut(s)	188, 214
BspPI	GGATC	2 cut(s)	207, 220
BspQI	GCTCTTC	3 cut(s)	132, 325, 497
BspTNI	GGTCTC	1 cut(s)	423
BsrBI	CCGCTC	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	190
BssMI	GATC	5 cut(s)	157, 212, 342, 411, 613
Bst4CI	ACNGT	5 cut(s)	19, 289, 329, 362, 608
Bst6I	CTCTTC	3 cut(s)	132, 325, 497
BstC8I	GCNNGC	2 cut(s)	6, 585
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	390
BstKTI	GATC	5 cut(s)	160, 215, 345, 414, 616
BstMAI	GTCTC	2 cut(s)	295, 423
BstMBI	GATC	5 cut(s)	157, 212, 342, 411, 613
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	128, 208
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	425, 560
BtsCI	GGATG	1 cut(s)	390
BtsI	GCAGTG	1 cut(s)	556
BtsIMutI	CAGTG	5 cut(s)	15, 334, 556, 605, 623
Cac8I	GCNNGC	2 cut(s)	6, 585
Csp6I	GTAC	2 cut(s)	278, 604
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	2 cut(s)	5, 47
CviQI	GTAC	2 cut(s)	278, 604
DpnI	GATC	5 cut(s)	159, 214, 344, 413, 615
DpnII	GATC	5 cut(s)	157, 212, 342, 411, 613
Eam1104I	CTCTTC	3 cut(s)	132, 325, 497
EarI	CTCTTC	3 cut(s)	132, 325, 497
Ecl136II	GAGCTC	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	560
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	423
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	2 cut(s)	306, 581
Eco88I	CYCGRG	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	295
FaeI	CATG	2 cut(s)	8, 50
FaiI	YATR	3 cut(s)	6, 48, 377
FatI	CATG	2 cut(s)	4, 46
FbaI	TGATCA	2 cut(s)	411, 613
FokI	GGATG	1 cut(s)	377
FriOI	GRGCYC	1 cut(s)	246
FspBI	CTAG	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	425, 560
HapII	CCGG	3 cut(s)	129, 209, 422
Hin1II	CATG	2 cut(s)	8, 50
HinfI	GANTC	2 cut(s)	121, 332
HpaII	CCGG	3 cut(s)	129, 209, 422
HphI	GGTGA	2 cut(s)	186, 532
Hpy188I	TCNGA	3 cut(s)	162, 325, 577
Hpy188III	TCNNGA	5 cut(s)	179, 224, 346, 499, 611
Hpy99I	CGWCG	1 cut(s)	481
HpyAV	CCTTC	6 cut(s)	50, 71, 79, 404, 517, 600
HpyCH4III	ACNGT	5 cut(s)	19, 289, 329, 362, 608
HpyCH4V	TGCA	3 cut(s)	4, 8, 97
Hsp92II	CATG	2 cut(s)	8, 50
Ksp22I	TGATCA	2 cut(s)	411, 613
Kzo9I	GATC	5 cut(s)	157, 212, 342, 411, 613
LguI	GCTCTTC	3 cut(s)	132, 325, 497
LmnI	GCTCC	7 cut(s)	114, 181, 186, 226, 455, 532, 621
LweI	GCATC	2 cut(s)	46, 399
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	5 cut(s)	164, 192, 236, 329, 563
MalI	GATC	5 cut(s)	159, 214, 344, 413, 615
MbiI	CCGCTC	1 cut(s)	184
MboI	GATC	5 cut(s)	157, 212, 342, 411, 613
MboII	GAAGA	7 cut(s)	113, 149, 312, 365, 372, 514, 562
MfeI	CAATTG	1 cut(s)	80
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	246, 537
MluCI	AATT	4 cut(s)	80, 440, 484, 538
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	9 cut(s)	216, 226, 436, 463, 469, 472, 523, 547, 550
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	2 cut(s)	51, 598
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	3 cut(s)	129, 209, 422
MspR9I	CCNGG	2 cut(s)	130, 210
MunI	CAATTG	1 cut(s)	80
NciI	CCSGG	2 cut(s)	130, 210
NdeII	GATC	5 cut(s)	157, 212, 342, 411, 613
NlaIII	CATG	2 cut(s)	8, 50
NlaIV	GGNNCC	2 cut(s)	188, 214
NmuCI	GTSAC	2 cut(s)	192, 329
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	598
PaeI	GCATGC	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	560
PciSI	GCTCTTC	3 cut(s)	132, 325, 497
PfeI	GAWTC	1 cut(s)	121
PflFI	GACNNNGTC	2 cut(s)	17, 376
PflMI	CCANNNNNTGG	1 cut(s)	517
PfoI	TCCNGGA	1 cut(s)	208
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Psp124BI	GAGCTC	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	188, 214
PspXI	VCTCGAGB	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	212
PsyI	GACNNNGTC	2 cut(s)	17, 376
PvuII	CAGCTG	1 cut(s)	409
RsaI	GTAC	2 cut(s)	279, 605
RsaNI	GTAC	2 cut(s)	278, 604
RseI	CAYNNNNRTG	2 cut(s)	51, 598
SacI	GAGCTC	1 cut(s)	246
SapI	GCTCTTC	3 cut(s)	132, 325, 497
Sau3AI	GATC	5 cut(s)	157, 212, 342, 411, 613
ScaI	AGTACT	1 cut(s)	279
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	130, 210
SduI	GDGCHC	2 cut(s)	246, 537
SetI	ASST	9 cut(s)	246, 260, 320, 411, 419, 509, 528, 592, 626
SfaNI	GCATC	2 cut(s)	46, 399
Sfr274I	CTCGAG	1 cut(s)	334
SlaI	CTCGAG	1 cut(s)	334
SmiMI	CAYNNNNRTG	2 cut(s)	51, 598
SmlI	CTYRAG	2 cut(s)	65, 334
SmoI	CTYRAG	2 cut(s)	65, 334
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	4 cut(s)	80, 440, 484, 538
SseBI	AGGCCT	1 cut(s)	560
SsiI	CCGC	4 cut(s)	25, 184, 197, 203
SspMI	CTAG	1 cut(s)	281
SstI	GAGCTC	1 cut(s)	246
StuI	AGGCCT	1 cut(s)	560
StyD4I	CCNGG	2 cut(s)	128, 208
TaaI	ACNGT	5 cut(s)	19, 289, 329, 362, 608
TaqI	TCGA	2 cut(s)	335, 479
TasI	AATT	4 cut(s)	80, 440, 484, 538
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	121
TscAI	CASTG	5 cut(s)	22, 334, 556, 605, 623
TseFI	GTSAC	2 cut(s)	192, 329
Tsp45I	GTSAC	2 cut(s)	192, 329
TspDTI	ATGAA	2 cut(s)	372, 497
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	5 cut(s)	22, 334, 556, 605, 623
Tth111I	GACNNNGTC	2 cut(s)	17, 376
Van91I	CCANNNNNTGG	1 cut(s)	517
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	8
XhoI	CTCGAG	1 cut(s)	334
XspI	CTAG	1 cut(s)	281
ZrmI	AGTACT	1 cut(s)	279
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.