Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0007893

Physical Location & Seq

Genomic Coordinates Reverse (-)

12168089 .. 12170735

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1036200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAAGAGGCTTGGAAGCTCAGATTCTTTGGGTGCTATGATTTCCATCTGCCCAATAATAACAGATGAACAGAGTCCAAGAAGCAACCATGTTTACAGCAGGGAATTCCAGTCCATGTTGGAAGGGTTAGATGAGGACGGTTGTGTGGAAGAGGCCGGCCGTGTTTCCGAGAAGAAGAGAAGATTGAACGTTGAACAAGTGAAGGCCCTGGAGAAAAACTTCGAGGTGGAGAACAAGCTTGAACCTGAAAGAAAGGTGAAGCTTGCCCAAGAACTTGGCCTCCAACCAAGACAAGTTTCCGTGTGGTTCCAGAACCGCCGTGCTCGTTGGAAAACCAAGCAATTGGAGCGCGATTACGGCGTTCTCAAAGCCGATTACGACTCTCTCAAGTGCAGCTACGATATCCTTCAACATGACAACGAAGCCCTTCTCAAAGAGATAAAGCAATTGAAAGCAAAATTCCAAGAGAACACAGAGAGCACCAATCCCTCAGTAAAACAAGAGAAACTCCTGGGGAAAGATCAATCCAGTTACCGGGCGGTTCACGAGGGGAGCCAGTCACCGCCACCCCCTCCGGAATCCTCCGTTCCAGAAACTGAATGCAAAGAGTTTAACTTTGAGAGCTTCAACAACACAAGTGGAGTACTAGAAGCCGTTTCATTGTTCCCAGATTTCAAAGATGGCTCTTCTGACAGTGACTCAAGCGCGATCTTGAACGAAGATAACAGTCCAAACTTGACTATGTCTTCATCTGGGATTCTCCAAAACCACCAGCTCATCAAGTCTCCGGCTTCCACTTCACTCAAATTCAACTGTTGTTCATCGTCCTCGCCGTCGCCATCGTCGATGAACTGCTTTCCGTTCCAAAAGAGCTATCAGCCTTCCGTGAAGGTCGAGGAGCACAACTTATTTAGCAGTGAGGAGGCTTGTAGCTTCTTCTCCGATGAGCAAGCACCTTCACTTCAGTGGTACTGTCCTGATCAATGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0040008 GO:0040034 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046983 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

331

Amino Acids

37.26

Weight (kDa)

5.09

Isoelectric Point (pI)

73.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	58 - 111	1.8e-16	Homeodomain
HALZ	PF02183	113 - 154	1.5e-16	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22430 AT4G40060 AT5G65310 AT5G65310
fragaria_vesca	FvH4_1g20230 FvH4_1g20230
malus_domestica	MD01G1036200.v1.1 MD15G1101700.v1.1 MD15G1319800.v1.1
prunus_persica	Prupe.6G193400_v2.0.a1 Prupe.6G193400_v2.0.a1
pyrus_communis	pycom01g06310 pycom15g28110
rosa_chinensis	RchiOBHm_Chr2g0112311
rosa_laevigata	RLG00000017970
rosa_multiflora	Rmu_sc0004467.1_g000045
rosa_roxburghii	Rroxscaffold_2G00131510
rosa_rugosa	Rorug02G0179900.1 Rorug02G0180000
rosa_samantha	Rh2AG232800 Rh2BG246100 Rh2CG236800 Rh2DG240400
rosa_wichuraiana	Rw2G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	351, 707
AccIII	TCCGGA	1 cut(s)	574
AciI	CCGC	3 cut(s)	316, 539, 563
AclI	AACGTT	1 cut(s)	189
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	3 cut(s)	104, 458, 806
AcuI	CTGAAG	1 cut(s)	947
AfaI	GTAC	2 cut(s)	645, 971
AfiI	CCNNNNNNNGG	1 cut(s)	534
AgsI	TTSAA	9 cut(s)	187, 194, 242, 410, 451, 628, 676, 715, 811
AjnI	CCWGG	2 cut(s)	207, 510
AjuI	GAANNNNNNNTTGG	2 cut(s)	280, 312
AleI	CACNNNNGTG	1 cut(s)	964
AloI	GAACNNNNNNTCC	2 cut(s)	264, 296
AluBI	AGCT	8 cut(s)	18, 238, 262, 396, 624, 775, 873, 933
AluI	AGCT	8 cut(s)	18, 238, 262, 396, 624, 775, 873, 933
Alw21I	GWGCWC	3 cut(s)	325, 482, 903
Alw26I	GTCTC	1 cut(s)	789
AlwNI	CAGNNNCTG	1 cut(s)	596
Aor13HI	TCCGGA	1 cut(s)	574
AoxI	GGCC	4 cut(s)	153, 157, 204, 277
ApeKI	GCWGC	1 cut(s)	393
ApoI	RAATTY	3 cut(s)	104, 458, 806
Asp700I	GAANNNNTTC	2 cut(s)	218, 426
AspLEI	GCGC	2 cut(s)	351, 707
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	2 cut(s)	268, 552
BauI	CACGAG	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	738
Bbv12I	GWGCWC	3 cut(s)	325, 482, 903
BbvI	GCAGC	1 cut(s)	405
BccI	CCATC	3 cut(s)	53, 674, 847
BceAI	ACGGC	5 cut(s)	144, 303, 373, 638, 817
BciT130I	CCWGG	2 cut(s)	209, 512
BclI	TGATCA	1 cut(s)	979
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	1 cut(s)	789
BfaI	CTAG	1 cut(s)	647
BisI	GCNGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	395
BmcAI	AGTACT	1 cut(s)	645
Bme1390I	CCNGG	3 cut(s)	209, 512, 536
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	308, 554
BmrFI	CCNGG	3 cut(s)	209, 512, 536
BpiI	GAAGAC	1 cut(s)	738
BpmI	CTGGAG	1 cut(s)	230
BpuEI	CTTGAG	2 cut(s)	371, 685
BpuMI	CCSGG	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	207, 511
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	534
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	3 cut(s)	109, 528, 556
Bse8I	GATNNNNATC	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	574
BseBI	CCWGG	2 cut(s)	209, 512
BseDI	CCNNGG	2 cut(s)	207, 511
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	534
BseMII	CTCAG	2 cut(s)	33, 504
BseNI	ACTGG	3 cut(s)	109, 528, 556
BseRI	GAGGAG	2 cut(s)	911, 935
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	405
BsgI	GTGCAG	1 cut(s)	412
Bsh1236I	CGCG	2 cut(s)	351, 707
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	4 cut(s)	155, 159, 206, 279
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	3 cut(s)	325, 482, 903
BsiSI	CCGG	4 cut(s)	156, 535, 575, 788
BslI	CCNNNNNNNGG	1 cut(s)	534
BsmAI	GTCTC	1 cut(s)	789
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	4 cut(s)	155, 159, 206, 279
Bsp1286I	GDGCHC	3 cut(s)	325, 482, 903
Bsp13I	TCCGGA	1 cut(s)	574
Bsp143I	GATC	3 cut(s)	520, 708, 979
BspACI	CCGC	3 cut(s)	316, 539, 563
BspANI	GGCC	4 cut(s)	155, 159, 206, 279
BspCNI	CTCAG	2 cut(s)	32, 503
BspEI	TCCGGA	1 cut(s)	574
BspFNI	CGCG	2 cut(s)	351, 707
BspLI	GGNNCC	2 cut(s)	308, 554
BspQI	GCTCTTC	1 cut(s)	691
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	3 cut(s)	109, 528, 556
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	207, 511
BssMI	GATC	3 cut(s)	520, 708, 979
BssSI	CACGAG	1 cut(s)	545
Bst2BI	CACGAG	1 cut(s)	545
Bst2UI	CCWGG	2 cut(s)	209, 512
Bst4CI	ACNGT	5 cut(s)	140, 695, 728, 815, 974
Bst6I	CTCTTC	3 cut(s)	144, 170, 691
BstC8I	GCNNGC	3 cut(s)	157, 264, 951
BstDEI	CTNAG	2 cut(s)	19, 490
BstFNI	CGCG	2 cut(s)	351, 707
BstHHI	GCGC	2 cut(s)	351, 707
BstKTI	GATC	3 cut(s)	523, 711, 982
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	3 cut(s)	520, 708, 979
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	346, 357
BstNI	CCWGG	2 cut(s)	209, 512
BstSCI	CCNGG	3 cut(s)	207, 510, 534
BstUI	CGCG	2 cut(s)	351, 707
BstV1I	GCAGC	1 cut(s)	405
BstV2I	GAAGAC	1 cut(s)	738
BstXI	CCANNNNNNTGG	2 cut(s)	275, 343
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	4 cut(s)	155, 159, 206, 279
BtsI	GCAGTG	1 cut(s)	922
BtsIMutI	CAGTG	3 cut(s)	700, 922, 971
Cac8I	GCNNGC	3 cut(s)	157, 264, 951
CaiI	CAGNNNCTG	1 cut(s)	596
CfoI	GCGC	2 cut(s)	351, 707
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	2 cut(s)	644, 970
CspCI	CAANNNNNGTGG	2 cut(s)	619, 654
CviAII	CATG	3 cut(s)	89, 115, 413
CviQI	GTAC	2 cut(s)	644, 970
DdeI	CTNAG	2 cut(s)	19, 490
DpnI	GATC	3 cut(s)	522, 710, 981
DpnII	GATC	3 cut(s)	520, 708, 979
EaeI	YGGCCR	1 cut(s)	157
EagI	CGGCCG	1 cut(s)	157
Eam1104I	CTCTTC	3 cut(s)	144, 170, 691
EarI	CTCTTC	3 cut(s)	144, 170, 691
EclXI	CGGCCG	1 cut(s)	157
Eco32I	GATATC	1 cut(s)	403
Eco52I	CGGCCG	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	947
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	207, 510
EcoRV	GATATC	1 cut(s)	403
FaeI	CATG	3 cut(s)	92, 118, 416
FaiI	YATR	5 cut(s)	38, 90, 116, 414, 743
FatI	CATG	3 cut(s)	88, 114, 412
FbaI	TGATCA	1 cut(s)	979
Fnu4HI	GCNGC	1 cut(s)	394
FseI	GGCCGGCC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	394
FspBI	CTAG	1 cut(s)	647
GlaI	GCGC	2 cut(s)	350, 706
GluI	GCNGC	1 cut(s)	394
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	4 cut(s)	155, 159, 206, 279
HapII	CCGG	4 cut(s)	156, 535, 575, 788
HhaI	GCGC	2 cut(s)	351, 707
Hin1II	CATG	3 cut(s)	92, 118, 416
Hin6I	GCGC	2 cut(s)	349, 705
HinP1I	GCGC	2 cut(s)	349, 705
HindIII	AAGCTT	2 cut(s)	236, 260
HinfI	GANTC	6 cut(s)	23, 73, 380, 578, 698, 757
HpaII	CCGG	4 cut(s)	156, 535, 575, 788
HphI	GGTGA	2 cut(s)	268, 552
Hpy166II	GTNNAC	2 cut(s)	94, 544
Hpy188I	TCNGA	4 cut(s)	22, 169, 691, 943
Hpy188III	TCNNGA	6 cut(s)	310, 545, 575, 590, 712, 977
Hpy8I	GTNNAC	2 cut(s)	94, 544
Hpy99I	CGWCG	2 cut(s)	838, 847
HpyAV	CCTTC	7 cut(s)	116, 196, 416, 437, 883, 891, 966
HpyCH4III	ACNGT	5 cut(s)	140, 695, 728, 815, 974
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	393, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	346, 357
HpyF3I	CTNAG	2 cut(s)	19, 490
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	92, 118, 416
HspAI	GCGC	2 cut(s)	349, 705
Kpn2I	TCCGGA	1 cut(s)	574
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	979
Kzo9I	GATC	3 cut(s)	520, 708, 979
LguI	GCTCTTC	1 cut(s)	691
LmnI	GCTCC	3 cut(s)	346, 552, 898
Lsp1109I	GCAGC	1 cut(s)	405
MaeI	CTAG	1 cut(s)	647
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	3 cut(s)	530, 558, 695
MalI	GATC	3 cut(s)	522, 710, 981
MboI	GATC	3 cut(s)	520, 708, 979
MboII	GAAGA	9 cut(s)	16, 161, 184, 187, 192, 678, 731, 738, 928
MfeI	CAATTG	2 cut(s)	341, 446
MhlI	GDGCHC	3 cut(s)	325, 482, 903
MluCI	AATT	5 cut(s)	104, 341, 446, 458, 806
MlyI	GAGTC	3 cut(s)	82, 374, 692
MmeI	TCCRAC	3 cut(s)	99, 307, 308
MroI	TCCGGA	1 cut(s)	574
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	2 cut(s)	218, 426
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	1 cut(s)	964
MspI	CCGG	4 cut(s)	156, 535, 575, 788
MspR9I	CCNGG	3 cut(s)	209, 512, 536
MunI	CAATTG	2 cut(s)	341, 446
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	2 cut(s)	209, 512
MvnI	CGCG	2 cut(s)	351, 707
MwoI	GCNNNNNNNGC	2 cut(s)	346, 357
NaeI	GCCGGC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	3 cut(s)	520, 708, 979
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	3 cut(s)	92, 118, 416
NlaIV	GGNNCC	2 cut(s)	308, 554
NmuCI	GTSAC	2 cut(s)	558, 695
OliI	CACNNNNGTG	1 cut(s)	964
PciSI	GCTCTTC	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	2 cut(s)	830, 842
PctI	GAATGC	1 cut(s)	605
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	2 cut(s)	218, 426
PfeI	GAWTC	3 cut(s)	23, 578, 757
PflFI	GACNNNGTC	1 cut(s)	742
PkrI	GCNGC	1 cut(s)	395
PleI	GAGTC	3 cut(s)	81, 374, 692
PpsI	GAGTC	3 cut(s)	81, 374, 692
Psp1406I	AACGTT	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	207, 510
PspGI	CCWGG	2 cut(s)	207, 510
PspN4I	GGNNCC	2 cut(s)	308, 554
PspPI	GGNCC	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	596
PsyI	GACNNNGTC	1 cut(s)	742
RigI	GGCCGGCC	1 cut(s)	159
RsaI	GTAC	2 cut(s)	645, 971
RsaNI	GTAC	2 cut(s)	644, 970
RseI	CAYNNNNRTG	1 cut(s)	964
SapI	GCTCTTC	1 cut(s)	691
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	1 cut(s)	394
Sau3AI	GATC	3 cut(s)	520, 708, 979
Sau96I	GGNCC	1 cut(s)	205
ScaI	AGTACT	1 cut(s)	645
SchI	GAGTC	3 cut(s)	82, 374, 692
ScrFI	CCNGG	3 cut(s)	209, 512, 536
SduI	GDGCHC	3 cut(s)	325, 482, 903
SmiMI	CAYNNNNRTG	1 cut(s)	964
SmlI	CTYRAG	2 cut(s)	386, 700
SmoI	CTYRAG	2 cut(s)	386, 700
Sse9I	AATT	5 cut(s)	104, 341, 446, 458, 806
SsiI	CCGC	3 cut(s)	316, 539, 563
SspMI	CTAG	1 cut(s)	647
StyD4I	CCNGG	3 cut(s)	207, 510, 534
TaaI	ACNGT	5 cut(s)	140, 695, 728, 815, 974
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	222, 845, 894
TasI	AATT	5 cut(s)	104, 341, 446, 458, 806
TatI	WGTACW	1 cut(s)	643
TfiI	GAWTC	3 cut(s)	23, 578, 757
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	3 cut(s)	700, 922, 971
TseFI	GTSAC	2 cut(s)	558, 695
TseI	GCWGC	1 cut(s)	393
Tsp45I	GTSAC	2 cut(s)	558, 695
TspDTI	ATGAA	6 cut(s)	17, 81, 648, 738, 810, 863
TspGWI	ACGGA	4 cut(s)	289, 574, 849, 874
TspRI	CASTG	3 cut(s)	700, 922, 971
Tth111I	GACNNNGTC	1 cut(s)	742
XapI	RAATTY	3 cut(s)	104, 458, 806
XmnI	GAANNNNTTC	2 cut(s)	218, 426
XspI	CTAG	1 cut(s)	647
ZrmI	AGTACT	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.