Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007893

Physical Location & Seq

Genomic Coordinates Forward (+)

25055125 .. 25059332

Gene Structure 4208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG246100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAAGAGGCTTGGCAGCTCAGATTCTATGGGTGCTTTGATTTCCATCTGCCCAACAACAACAGCAGATGAACACAGTCCAAGAAACAACCATGTTTACAGCAGAGACTTCCAGTCCATGCTGGACGGCTTAGACGAAGAAGGGTGCGTGGAAGAGGCCGGCCATGTCGCTGAGAAGAAGCGCCGGCTAAGCGTTGAGCAAGTGAAGGCCTTGGAGAAGAATTTCGAGGTGGAGAACAAGCTTGAGCCAGAGAGAAAAGTGAAGCTTGCCCAAGAGCTTGGTCTTCAACCAAGACAAGTTGCGGTGTGGTTCCAAAACCGCCGAGCTCGTTGGAAAACTAAGCAATTGGAACGCGACTACGGCGTTCTCAAGGCCAACTATGACTCTCTCAAGAGCAGCTATGATTCTCTCCAACATGACAATCAAGCTCTTCACAAAGAGATAAAGGAATTGAAAGCGAAGGTCCAAGAAGAGAACACAGAGAGCAATCACTCAGTGAAAGAGGAGCAAATGGTTCTGGCAAAAGAGTCCAGTTACAAAGTGGTAATGGAGCAGAGCAAGCCACAATCTCCTGATACGTCAGGTCCAGTTTCAGAGTCCAAAGAGCTAAACTTTGAGAGCTTCAACAATACCAACTCCAATGGAGCAGTGGGAGTAGAAGTGTCATTGTTCCCTGACTTCAAAGACGGCTCATCGGACAGTGACTCAAGCGCAATCCTAAACGAGGATCATAACAGTCCCAACGGGACTATAAACCACCACCACCAGCTCATGTCAGCCTCCAATTCACTCAAATTCAACTGCTCTGCCTCATCGTCCTCGCCTTCCTCGTCGTCAATGAATTGCTTCCAGTTCCAGAAGAGTAGTTATCAGCCTCAGTTTGTGAAGATAGAGGAGCACAATTTCTTTAGTAGTGAGGAGGCTTGTAACTTCTTTTCAGATGAGCAAGCTCCCTCACTTCAGTGGTACTGCCCTGATCAATGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0040008 GO:0040034 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046983 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

329

Amino Acids

37.21

Weight (kDa)

5.31

Isoelectric Point (pI)

60.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	59 - 112	7.1e-17	Homeodomain
HALZ	PF02183	114 - 156	6.1e-20	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22430 AT4G40060 AT5G65310 AT5G65310
fragaria_vesca	FvH4_1g20230 FvH4_1g20230
malus_domestica	MD01G1036200.v1.1 MD15G1101700.v1.1 MD15G1319800.v1.1
prunus_persica	Prupe.6G193400_v2.0.a1 Prupe.6G193400_v2.0.a1
pyrus_communis	pycom01g06310 pycom15g28110
rosa_chinensis	RchiOBHm_Chr2g0112311
rosa_laevigata	RLG00000017970
rosa_multiflora	Rmu_sc0004467.1_g000045
rosa_roxburghii	Rroxscaffold_2G00131510
rosa_rugosa	Rorug02G0179900.1 Rorug02G0180000
rosa_samantha	Rh2AG232800 Rh2BG246100 Rh2CG236800 Rh2DG240400
rosa_wichuraiana	Rw2G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	354
AciI	CCGC	2 cut(s)	302, 319
AclWI	GGATC	1 cut(s)	735
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	220, 794
AcuI	CTGAAG	1 cut(s)	944
AdeI	CACNNNGTG	1 cut(s)	496
AfaI	GTAC	1 cut(s)	968
AfiI	CCNNNNNNNGG	1 cut(s)	724
AgsI	TTSAA	5 cut(s)	287, 454, 625, 682, 799
AhdI	GACNNNNNGTC	1 cut(s)	112
AleI	CACNNNNGTG	1 cut(s)	961
Alw21I	GWGCWC	2 cut(s)	328, 900
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	735
AoxI	GGCC	4 cut(s)	156, 160, 207, 372
ApeKI	GCWGC	2 cut(s)	15, 396
ApoI	RAATTY	2 cut(s)	220, 794
Asp700I	GAANNNNTTC	2 cut(s)	221, 845
AspLEI	GCGC	2 cut(s)	183, 713
AspS9I	GGNCC	2 cut(s)	463, 584
AvaII	GGWCC	2 cut(s)	463, 584
BanII	GRGCYC	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	328, 900
BbvI	GCAGC	2 cut(s)	27, 408
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	3 cut(s)	142, 376, 703
BclI	TGATCA	1 cut(s)	976
BcoDI	GTCTC	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	184
BisI	GCNGC	2 cut(s)	16, 397
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	2 cut(s)	17, 398
Bme18I	GGWCC	2 cut(s)	463, 584
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	463, 584
BmiI	GGNNCC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	188
BpuEI	CTTGAG	4 cut(s)	263, 353, 374, 691
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	645, 675
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse118I	RCCGGY	2 cut(s)	158, 183
Bse1I	ACTGG	4 cut(s)	112, 531, 587, 850
Bse8I	GATNNNNATC	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	210
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMII	CTCAG	4 cut(s)	33, 162, 507, 890
BseNI	ACTGG	4 cut(s)	112, 531, 587, 850
BseRI	GAGGAG	3 cut(s)	518, 908, 932
BseXI	GCAGC	2 cut(s)	27, 408
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	4 cut(s)	158, 162, 209, 374
BsiHKAI	GWGCWC	2 cut(s)	328, 900
BsiSI	CCGG	2 cut(s)	159, 184
BslFI	GGGAC	2 cut(s)	723, 760
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	723, 760
BsnI	GGCC	4 cut(s)	158, 162, 209, 374
Bsp1286I	GDGCHC	2 cut(s)	328, 900
Bsp143I	GATC	2 cut(s)	727, 976
Bsp1720I	GCTNAGC	1 cut(s)	188
BspACI	CCGC	2 cut(s)	302, 319
BspANI	GGCC	4 cut(s)	158, 162, 209, 374
BspCNI	CTCAG	4 cut(s)	32, 163, 506, 889
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	311
BspPI	GGATC	1 cut(s)	735
BspQI	GCTCTTC	1 cut(s)	435
BsrFI	RCCGGY	2 cut(s)	158, 183
BsrI	ACTGG	4 cut(s)	112, 531, 587, 850
BssAI	RCCGGY	2 cut(s)	158, 183
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	727, 976
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	3 cut(s)	77, 701, 737
Bst6I	CTCTTC	4 cut(s)	147, 435, 465, 854
BstC8I	GCNNGC	5 cut(s)	160, 185, 267, 560, 948
BstDEI	CTNAG	7 cut(s)	19, 130, 171, 188, 339, 493, 876
BstENI	CCTNNNNNAGG	1 cut(s)	722
BstFNI	CGCG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	2 cut(s)	183, 713
BstKTI	GATC	2 cut(s)	730, 979
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	727, 976
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 360, 559
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	27, 408
BstV2I	GAAGAC	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	278
BsuRI	GGCC	4 cut(s)	158, 162, 209, 374
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	4 cut(s)	501, 654, 706, 968
Cac8I	GCNNGC	5 cut(s)	160, 185, 267, 560, 948
CfoI	GCGC	2 cut(s)	183, 713
Cfr10I	RCCGGY	2 cut(s)	158, 183
Cfr13I	GGNCC	2 cut(s)	463, 584
Csp6I	GTAC	1 cut(s)	967
CviAII	CATG	5 cut(s)	92, 118, 164, 416, 772
CviQI	GTAC	1 cut(s)	967
DdeI	CTNAG	7 cut(s)	19, 130, 171, 188, 339, 493, 876
DpnI	GATC	2 cut(s)	729, 978
DpnII	GATC	2 cut(s)	727, 976
DraIII	CACNNNGTG	1 cut(s)	496
DriI	GACNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	4 cut(s)	147, 435, 465, 854
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	4 cut(s)	147, 435, 465, 854
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	463, 584
Eco53kI	GAGCTC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	944
EcoICRI	GAGCTC	1 cut(s)	326
EcoNI	CCTNNNNNAGG	1 cut(s)	722
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	5 cut(s)	95, 121, 167, 419, 775
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	2 cut(s)	723, 760
FatI	CATG	5 cut(s)	91, 117, 163, 415, 771
FbaI	TGATCA	1 cut(s)	976
Fnu4HI	GCNGC	2 cut(s)	16, 397
FriOI	GRGCYC	1 cut(s)	328
FseI	GGCCGGCC	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	16, 397
GlaI	GCGC	2 cut(s)	182, 712
GluI	GCNGC	2 cut(s)	16, 397
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	4 cut(s)	158, 162, 209, 374
HapII	CCGG	2 cut(s)	159, 184
HhaI	GCGC	2 cut(s)	183, 713
Hin1II	CATG	5 cut(s)	95, 121, 167, 419, 775
Hin6I	GCGC	2 cut(s)	181, 711
HinP1I	GCGC	2 cut(s)	181, 711
HindIII	AAGCTT	2 cut(s)	239, 263
HinfI	GANTC	6 cut(s)	23, 383, 404, 527, 596, 704
HpaII	CCGG	2 cut(s)	159, 184
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	22, 595, 697, 940
Hpy188III	TCNNGA	3 cut(s)	391, 572, 856
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	835
HpyAV	CCTTC	4 cut(s)	134, 199, 454, 834
HpyCH4III	ACNGT	3 cut(s)	77, 701, 737
HpyCH4IV	ACGT	1 cut(s)	578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 360, 559
HpyF3I	CTNAG	7 cut(s)	19, 130, 171, 188, 339, 493, 876
HpySE526I	ACGT	1 cut(s)	578
Hsp92II	CATG	5 cut(s)	95, 121, 167, 419, 775
HspAI	GCGC	2 cut(s)	181, 711
KroI	GCCGGC	2 cut(s)	158, 183
KroNI	GCCGGC	2 cut(s)	160, 185
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	2 cut(s)	727, 976
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	5 cut(s)	505, 550, 644, 895, 955
Lsp1109I	GCAGC	2 cut(s)	27, 408
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	3 cut(s)	533, 701, 926
MalI	GATC	2 cut(s)	729, 978
MboI	GATC	2 cut(s)	727, 976
MfeI	CAATTG	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	328, 900
MluCI	AATT	7 cut(s)	220, 344, 449, 784, 794, 841, 901
MlyI	GAGTC	4 cut(s)	377, 536, 605, 698
MmeI	TCCRAC	2 cut(s)	311, 436
MroNI	GCCGGC	2 cut(s)	158, 183
MroXI	GAANNNNTTC	2 cut(s)	221, 845
MslI	CAYNNNNRTG	1 cut(s)	961
MspI	CCGG	2 cut(s)	159, 184
MunI	CAATTG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	189, 360, 559
NaeI	GCCGGC	2 cut(s)	160, 185
NdeII	GATC	2 cut(s)	727, 976
NgoMIV	GCCGGC	2 cut(s)	158, 183
NlaIII	CATG	5 cut(s)	95, 121, 167, 419, 775
NlaIV	GGNNCC	1 cut(s)	311
NmeAIII	GCCGAG	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	701
OliI	CACNNNNGTG	1 cut(s)	961
PceI	AGGCCT	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 827
PdiI	GCCGGC	2 cut(s)	160, 185
PdmI	GAANNNNTTC	2 cut(s)	221, 845
PfeI	GAWTC	2 cut(s)	23, 404
PkrI	GCNGC	2 cut(s)	17, 398
PleI	GAGTC	4 cut(s)	377, 535, 604, 698
PpsI	GAGTC	4 cut(s)	377, 535, 604, 698
Psp124BI	GAGCTC	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	2 cut(s)	463, 584
RigI	GGCCGGCC	1 cut(s)	162
RsaI	GTAC	1 cut(s)	968
RsaNI	GTAC	1 cut(s)	967
RseI	CAYNNNNRTG	1 cut(s)	961
SacI	GAGCTC	1 cut(s)	328
SapI	GCTCTTC	1 cut(s)	435
SatI	GCNGC	2 cut(s)	16, 397
Sau3AI	GATC	2 cut(s)	727, 976
Sau96I	GGNCC	2 cut(s)	463, 584
SchI	GAGTC	4 cut(s)	377, 536, 605, 698
SduI	GDGCHC	2 cut(s)	328, 900
SinI	GGWCC	2 cut(s)	463, 584
SmiMI	CAYNNNNRTG	1 cut(s)	961
SmlI	CTYRAG	4 cut(s)	242, 368, 389, 706
SmoI	CTYRAG	4 cut(s)	242, 368, 389, 706
Sse9I	AATT	7 cut(s)	220, 344, 449, 784, 794, 841, 901
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	2 cut(s)	302, 319
SstI	GAGCTC	1 cut(s)	328
StuI	AGGCCT	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	3 cut(s)	77, 701, 737
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	1 cut(s)	225
TasI	AATT	7 cut(s)	220, 344, 449, 784, 794, 841, 901
TfiI	GAWTC	2 cut(s)	23, 404
TscAI	CASTG	4 cut(s)	501, 654, 706, 968
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	2 cut(s)	15, 396
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	3 cut(s)	17, 84, 854
TspRI	CASTG	4 cut(s)	501, 654, 706, 968
VpaK11BI	GGWCC	2 cut(s)	463, 584
XagI	CCTNNNNNAGG	1 cut(s)	722
XapI	RAATTY	2 cut(s)	220, 794
XcmI	CCANNNNNNNNNTGG	2 cut(s)	538, 646
XmnI	GAANNNNTTC	2 cut(s)	221, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.