AT4G40060

homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007893
Physical Location & Seq
Reverse (-)
18571239 .. 18573084
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G40060.1

Sequence Viewer

Length: 885 bp
ATGAAGAGACTAAGCAGCTCAGATTCAATGTGTGGTCTAATCTCCACTTCTACAGATGAACAGAGTCCAAGAGGGTACGGAAGTAATTACCAATCTATGCTTGAAGGTTACGATGAAGATGCTACACTAATCGAGGAATATTCCGGCAACCACCACCACATGGGTCTATCGGAGAAGAAGAGAAGATTAAAAGTTGACCAAGTCAAAGCTCTTGAGAAGAATTTCGAACTTGAGAATAAACTCGAACCTGAGAGGAAAACTAAATTAGCACAAGAGCTTGGACTTCAACCTCGTCAAGTAGCTGTTTGGTTTCAGAACCGTCGTGCACGGTGGAAAACAAAACAGCTTGAAAAAGATTACGGTGTTCTTAAGGGTCAATACGATTCTCTCCGCCACAATTTCGATTCTCTCCGCCGTGACAATGATTCCCTTCTCCAAGAGATTAGTAAAATCAAAGCTAAGGTAAACGGTGAAGAAGATAACAACAACAACAAAGCTATTACGGAGGGTGTTAAGGAAGAGGAAGTTCACAAGACGGATTCGATTCCTTCGTCTCCTCTGCAGTTTCTAGAACATTCCTCTGGTTTTAACTACCGGCGAAGCTTCACTGACCTCCGTGACCTTCTACCGAATTCCACCGTTGTCGAGGCTGGATCTTCCGATAGTTGCGATTCAAGCGCCGTTCTTAACGACGAAACAAGTTCTGATAACGGAAGATTGACGCCGCCTGTGACGGTTACTGGCGGGAGTTTCTTACAGTTTGTGAAAACAGAGCAAACAGAGGATCACGAGGATTTTCTAAGCGGTGAAGAAGCTTGTGGTTTCTTCTCCGATGAACAGCCGCCGTCACTTCATTGGTACTCTGCTTCAGATCATTGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009637 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0040008 GO:0040034 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HALZ Homeobox

Protein Analysis

294

Amino Acids

33.39

Weight (kDa)

5.1

Isoelectric Point (pI)

66.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 59 - 112 1.6e-16 Homeodomain
HALZ PF02183 114 - 155 1.5e-16 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 160
AciI CCGC 6 cut(s) 391, 412, 725, 744, 804, 842
AclWI GGATC 2 cut(s) 661, 792
AcsI RAATTY 2 cut(s) 220, 631
AcuI CTGAAG 1 cut(s) 852
AcyI GRCGYC 1 cut(s) 722
AfaI GTAC 2 cut(s) 77, 860
AfiI CCNNNNNNNGG 1 cut(s) 160
AflII CTTAAG 1 cut(s) 368
AgsI TTSAA 5 cut(s) 27, 104, 287, 350, 675
AluBI AGCT 9 cut(s) 18, 209, 277, 302, 346, 458, 497, 603, 815
AluI AGCT 9 cut(s) 18, 209, 277, 302, 346, 458, 497, 603, 815
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 558
Alw44I GTGCAC 1 cut(s) 324
AlwI GGATC 2 cut(s) 661, 792
ApaLI GTGCAC 1 cut(s) 324
ApeKI GCWGC 1 cut(s) 15
ApoI RAATTY 2 cut(s) 220, 631
Asp700I GAANNNNTTC 1 cut(s) 221
AspLEI GCGC 1 cut(s) 680
AsuHPI GGTGA 2 cut(s) 482, 818
AsuII TTCGAA 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 328
BaeI ACNNNNGTAYC 2 cut(s) 67, 100
BauI CACGAG 1 cut(s) 788
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 1 cut(s) 27
BceAI ACGGC 3 cut(s) 399, 665, 829
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 2 cut(s) 51, 560
BfoI RGCGCY 1 cut(s) 681
BfrI CTTAAG 1 cut(s) 368
BisI GCNGC 3 cut(s) 16, 725, 842
BlsI GCNGC 3 cut(s) 17, 726, 843
BmsI GCATC 1 cut(s) 109
Bpu10I CCTNAGC 1 cut(s) 459
Bpu14I TTCGAA 1 cut(s) 225
BpuEI CTTGAG 2 cut(s) 233, 251
BsaHI GRCGYC 1 cut(s) 722
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 594
Bse1I ACTGG 1 cut(s) 745
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 2 cut(s) 33, 240
BseNI ACTGG 1 cut(s) 745
BseRI GAGGAG 1 cut(s) 546
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 2 cut(s) 144, 595
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 558
BsmBI CGTCTC 1 cut(s) 558
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 3 cut(s) 653, 784, 871
BspACI CCGC 6 cut(s) 391, 412, 725, 744, 804, 842
BspCNI CTCAG 2 cut(s) 32, 241
BspMAI CTGCAG 1 cut(s) 564
BspPI GGATC 2 cut(s) 661, 792
BspT104I TTCGAA 1 cut(s) 225
BspTI CTTAAG 1 cut(s) 368
BsrFI RCCGGY 1 cut(s) 594
BsrI ACTGG 1 cut(s) 745
BssAI RCCGGY 1 cut(s) 594
BssMI GATC 3 cut(s) 653, 784, 871
BssNI GRCGYC 1 cut(s) 722
BssSI CACGAG 1 cut(s) 788
Bst2BI CACGAG 1 cut(s) 788
Bst4CI ACNGT 7 cut(s) 320, 330, 362, 470, 640, 736, 759
Bst6I CTCTTC 2 cut(s) 173, 513
BstACI GRCGYC 1 cut(s) 722
BstAFI CTTAAG 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 225
BstDEI CTNAG 5 cut(s) 11, 19, 249, 459, 800
BstH2I RGCGCY 1 cut(s) 681
BstHHI GCGC 1 cut(s) 680
BstKTI GATC 3 cut(s) 656, 787, 874
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 3 cut(s) 653, 784, 871
BstMWI GCNNNNNNNGC 1 cut(s) 675
BstSFI CTRYAG 2 cut(s) 51, 560
BstSLI GKGCMC 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 653
BstYI RGATCY 1 cut(s) 653
BtsIMutI CAGTG 1 cut(s) 606
CfoI GCGC 1 cut(s) 680
Cfr10I RCCGGY 1 cut(s) 594
CseI GACGC 1 cut(s) 730
Csp6I GTAC 2 cut(s) 76, 859
CviAII CATG 1 cut(s) 160
CviQI GTAC 2 cut(s) 76, 859
DdeI CTNAG 5 cut(s) 11, 19, 249, 459, 800
DpnI GATC 3 cut(s) 655, 786, 873
DpnII GATC 3 cut(s) 653, 784, 871
Eam1104I CTCTTC 2 cut(s) 173, 513
EarI CTCTTC 2 cut(s) 173, 513
EciI GGCGGA 2 cut(s) 380, 401
Eco57I CTGAAG 1 cut(s) 852
EcoRI GAATTC 1 cut(s) 631
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 1 cut(s) 163
FaiI YATR 2 cut(s) 98, 161
FatI CATG 1 cut(s) 159
FauI CCCGC 1 cut(s) 737
Fnu4HI GCNGC 3 cut(s) 16, 725, 842
Fsp4HI GCNGC 3 cut(s) 16, 725, 842
FspBI CTAG 1 cut(s) 569
GlaI GCGC 1 cut(s) 679
GluI GCNGC 3 cut(s) 16, 725, 842
HaeII RGCGCY 1 cut(s) 681
HapII CCGG 2 cut(s) 144, 595
HgaI GACGC 1 cut(s) 730
HhaI GCGC 1 cut(s) 680
Hin1I GRCGYC 1 cut(s) 722
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HindIII AAGCTT 2 cut(s) 601, 813
HinfI GANTC 8 cut(s) 23, 64, 383, 404, 425, 539, 544, 671
HpaII CCGG 2 cut(s) 144, 595
HphI GGTGA 2 cut(s) 482, 818
Hpy166II GTNNAC 4 cut(s) 196, 326, 466, 529
Hpy188I TCNGA 7 cut(s) 22, 172, 315, 661, 706, 832, 871
Hpy188III TCNNGA 3 cut(s) 212, 569, 788
Hpy8I GTNNAC 4 cut(s) 196, 326, 466, 529
Hpy99I CGWCG 2 cut(s) 324, 695
HpyAV CCTTC 4 cut(s) 98, 440, 558, 632
HpyCH4III ACNGT 7 cut(s) 320, 330, 362, 470, 640, 736, 759
HpyCH4V TGCA 2 cut(s) 326, 562
HpyF10VI GCNNNNNNNGC 1 cut(s) 675
HpyF3I CTNAG 5 cut(s) 11, 19, 249, 459, 800
Hsp92I GRCGYC 1 cut(s) 722
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 1 cut(s) 678
Kzo9I GATC 3 cut(s) 653, 784, 871
LpnPI CCDG 7 cut(s) 157, 261, 567, 608, 636, 726, 741
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 109
MaeI CTAG 1 cut(s) 569
MaeIII GTNAC 6 cut(s) 107, 416, 617, 730, 736, 846
MalI GATC 3 cut(s) 655, 786, 873
MboI GATC 3 cut(s) 653, 784, 871
MflI RGATCY 1 cut(s) 653
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 5 cut(s) 85, 220, 263, 397, 631
MlyI GAGTC 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 221
MseI TTAA 5 cut(s) 188, 369, 513, 588, 687
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 2 cut(s) 144, 595
MwoI GCNNNNNNNGC 1 cut(s) 675
NdeII GATC 3 cut(s) 653, 784, 871
NlaIII CATG 1 cut(s) 163
NmuCI GTSAC 4 cut(s) 416, 617, 730, 846
NspV TTCGAA 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 548
PdmI GAANNNNTTC 1 cut(s) 221
PfeI GAWTC 7 cut(s) 23, 383, 404, 425, 539, 544, 671
PflFI GACNNNGTC 1 cut(s) 200
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 3 cut(s) 17, 726, 843
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PstI CTGCAG 1 cut(s) 564
PsuI RGATCY 1 cut(s) 653
PsyI GACNNNGTC 1 cut(s) 200
RsaI GTAC 2 cut(s) 77, 860
RsaNI GTAC 2 cut(s) 76, 859
SaqAI TTAA 5 cut(s) 188, 369, 513, 588, 687
SatI GCNGC 3 cut(s) 16, 725, 842
Sau3AI GATC 3 cut(s) 653, 784, 871
SchI GAGTC 1 cut(s) 73
SduI GDGCHC 1 cut(s) 328
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 2 cut(s) 51, 560
SfuI TTCGAA 1 cut(s) 225
SmlI CTYRAG 3 cut(s) 212, 230, 368
SmoI CTYRAG 3 cut(s) 212, 230, 368
Sse9I AATT 5 cut(s) 85, 220, 263, 397, 631
SsiI CCGC 6 cut(s) 391, 412, 725, 744, 804, 842
SspI AATATT 1 cut(s) 140
SspMI CTAG 1 cut(s) 569
TaaI ACNGT 7 cut(s) 320, 330, 362, 470, 640, 736, 759
TaqI TCGA 6 cut(s) 132, 225, 243, 402, 542, 645
TasI AATT 5 cut(s) 85, 220, 263, 397, 631
TauI GCSGC 2 cut(s) 727, 844
TfiI GAWTC 7 cut(s) 23, 383, 404, 425, 539, 544, 671
Tru1I TTAA 5 cut(s) 188, 369, 513, 588, 687
Tru9I TTAA 5 cut(s) 188, 369, 513, 588, 687
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 4 cut(s) 416, 617, 730, 846
TseI GCWGC 1 cut(s) 15
Tsp45I GTSAC 4 cut(s) 416, 617, 730, 846
TspDTI ATGAA 5 cut(s) 17, 72, 129, 842, 849
TspGWI ACGGA 5 cut(s) 93, 518, 551, 605, 726
TspRI CASTG 1 cut(s) 613
Tth111I GACNNNGTC 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 160
Vha464I CTTAAG 1 cut(s) 368
VneI GTGCAC 1 cut(s) 324
XapI RAATTY 2 cut(s) 220, 631
XbaI TCTAGA 1 cut(s) 568
XmnI GAANNNNTTC 1 cut(s) 221
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.