Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007893

Physical Location & Seq

Genomic Coordinates Forward (+)

33163686 .. 33166311

Gene Structure 2626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1319800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAAGAGGCTTGGAAGTTCAGATTCCTTTGGTGCTATGATTTCCATCTGCCCAACAACAGAGGAACACAGTCCAAGAAACAACCATGTTTACAGCAGAGAATTCCAGTCCATGTTGGATGGCTTAGATGAGGAAGGGTGTGTCGAAGAAGCCGGCCATGTTTCCGAGAAGAAGAGGAGATTGAGCGTTGAACAAGTGAAGGCCTTAGAGAAAAACTTTGAGGTGGAGAACAAGCTTGAACCTGAAAGAAAGGTGAAGCTTGCCCAAGAACTAGGCCTCCAACCAAGACAAGTTGCCGTGTGGTTCCAGAACCGCCGTGCTCGTTGGAAAACCAAACAATTGGAGCGCGATTATAGCGTTCTCAAAGCCAATTACGACACTGTCAAGCGGAACTACGATACCCTTCAACATGACAACGAAGCCCTTCTCAAGGAGATAAAGCAATTGAAGGCAAAGTTGCAAGAAGATAACGCAGCGAGCAAGAATCCCACCGTGAAAGAAGAGCAACTCTTGGGAAAAGATCAGAGTTACAAAGTGGTTCAGGAGCGGAGCCAGTCACCGCCACCGCCTCCGGGATCCTCTGTTCCAGAAACAGAGTGTAACGAGCTCAACTTTGAGAGCTTCAACAACACAAGTGGAGTACTAGAAGCCGTCTCATTGTTCCCAGATTTCAAAGATGGCTCTTCGGACAGTGACTCGAGTGCGATCTTGAACGAAGATAACAGTCCAAACTTGACTATGTCTTCATCTGGCATCCTCCAAAACCATCAGCTGATCAAGTCTCCGGCCTCCACTTCACTCAAATTCAACTGCTCCTCGTCCTCCTCGCCGTCGTCATCGTCGATGAATTGCTTTCCGTTCCAGAAGAGCTACCAGCCTTTGGTGAAGGTAGAGGAGCACAATTTCTTTAGCAGTGAGGAGGCCTGTAGCTTCTTCTCCGATGAGCAAGCACCTTCACTTCAGTGGTACTGTCCTGATCAGTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0040008 GO:0040034 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046983 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

330

Amino Acids

37.18

Weight (kDa)

5.21

Isoelectric Point (pI)

72.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	57 - 110	6.8e-17	Homeodomain
HALZ	PF02183	112 - 154	1e-15	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22430 AT4G40060 AT5G65310 AT5G65310
fragaria_vesca	FvH4_1g20230 FvH4_1g20230
malus_domestica	MD01G1036200.v1.1 MD15G1101700.v1.1 MD15G1319800.v1.1
prunus_persica	Prupe.6G193400_v2.0.a1 Prupe.6G193400_v2.0.a1
pyrus_communis	pycom01g06310 pycom15g28110
rosa_chinensis	RchiOBHm_Chr2g0112311
rosa_laevigata	RLG00000017970
rosa_multiflora	Rmu_sc0004467.1_g000045
rosa_roxburghii	Rroxscaffold_2G00131510
rosa_rugosa	Rorug02G0179900.1 Rorug02G0180000
rosa_samantha	Rh2AG232800 Rh2BG246100 Rh2CG236800 Rh2DG240400
rosa_wichuraiana	Rw2G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	880
AccBSI	CCGCTC	1 cut(s)	547
AccII	CGCG	1 cut(s)	348
AciI	CCGC	5 cut(s)	313, 388, 547, 560, 566
AclWI	GGATC	2 cut(s)	570, 583
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	101, 803
AcuI	CTGAAG	1 cut(s)	944
AfaI	GTAC	2 cut(s)	642, 968
AfiI	CCNNNNNNNGG	3 cut(s)	430, 572, 880
AgsI	TTSAA	8 cut(s)	191, 239, 407, 448, 625, 673, 712, 808
AleI	CACNNNNGTG	1 cut(s)	961
AloI	GAACNNNNNNTCC	4 cut(s)	261, 293, 567, 599
AluBI	AGCT	8 cut(s)	235, 259, 607, 621, 772, 870, 930, 987
AluI	AGCT	8 cut(s)	235, 259, 607, 621, 772, 870, 930, 987
Alw21I	GWGCWC	3 cut(s)	322, 609, 900
Alw26I	GTCTC	2 cut(s)	658, 786
AlwI	GGATC	2 cut(s)	570, 583
Ama87I	CYCGRG	1 cut(s)	697
AoxI	GGCC	5 cut(s)	154, 201, 274, 786, 921
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	2 cut(s)	101, 803
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	348
AsuC2I	CCSGG	1 cut(s)	573
AsuHPI	GGTGA	3 cut(s)	265, 549, 895
AvaI	CYCGRG	1 cut(s)	697
BamHI	GGATCC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	609
BbsI	GAAGAC	1 cut(s)	735
Bbv12I	GWGCWC	3 cut(s)	322, 609, 900
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	4 cut(s)	53, 113, 671, 774
BceAI	ACGGC	4 cut(s)	281, 300, 635, 814
BclI	TGATCA	2 cut(s)	774, 976
BcnI	CCSGG	1 cut(s)	573
BcoDI	GTCTC	2 cut(s)	658, 786
BfaI	CTAG	2 cut(s)	272, 644
BfmI	CTRYAG	1 cut(s)	925
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
BmcAI	AGTACT	1 cut(s)	642
Bme1390I	CCNGG	1 cut(s)	573
BmeT110I	CYCGRG	1 cut(s)	697
BmiI	GGNNCC	3 cut(s)	305, 551, 577
BmrFI	CCNGG	1 cut(s)	573
BmsI	GCATC	1 cut(s)	762
BpiI	GAAGAC	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	573
BsaBI	GATNNNNATC	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	3 cut(s)	430, 572, 880
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	106, 553
Bse8I	GATNNNNATC	1 cut(s)	44
BseGI	GGATG	2 cut(s)	124, 753
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	3 cut(s)	430, 572, 880
BseNI	ACTGG	2 cut(s)	106, 553
BseRI	GAGGAG	5 cut(s)	190, 805, 814, 908, 932
BseXI	GCAGC	1 cut(s)	485
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	5 cut(s)	156, 203, 276, 788, 923
BsiHKAI	GWGCWC	3 cut(s)	322, 609, 900
BsiHKCI	CYCGRG	1 cut(s)	697
BsiSI	CCGG	3 cut(s)	153, 572, 785
BslI	CCNNNNNNNGG	3 cut(s)	430, 572, 880
BsmAI	GTCTC	2 cut(s)	658, 786
BsmBI	CGTCTC	1 cut(s)	658
BsnI	GGCC	5 cut(s)	156, 203, 276, 788, 923
BsoBI	CYCGRG	1 cut(s)	697
Bsp1286I	GDGCHC	3 cut(s)	322, 609, 900
Bsp143I	GATC	5 cut(s)	520, 575, 705, 774, 976
BspACI	CCGC	5 cut(s)	313, 388, 547, 560, 566
BspANI	GGCC	5 cut(s)	156, 203, 276, 788, 923
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	3 cut(s)	305, 551, 577
BspPI	GGATC	2 cut(s)	570, 583
BspQI	GCTCTTC	3 cut(s)	495, 688, 860
BsrBI	CCGCTC	1 cut(s)	547
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	106, 553
BssAI	RCCGGY	1 cut(s)	152
BssMI	GATC	5 cut(s)	520, 575, 705, 774, 976
Bst4CI	ACNGT	6 cut(s)	71, 382, 493, 692, 725, 971
Bst6I	CTCTTC	4 cut(s)	167, 495, 688, 860
BstC8I	GCNNGC	4 cut(s)	154, 261, 478, 948
BstDEI	CTNAG	2 cut(s)	124, 205
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	124, 753
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	5 cut(s)	523, 578, 708, 777, 979
BstMAI	GTCTC	2 cut(s)	658, 786
BstMBI	GATC	5 cut(s)	520, 575, 705, 774, 976
BstMWI	GCNNNNNNNGC	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	571
BstSFI	CTRYAG	1 cut(s)	925
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	485
BstV2I	GAAGAC	1 cut(s)	735
BstX2I	RGATCY	1 cut(s)	575
BstXI	CCANNNNNNTGG	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	575
BsuRI	GGCC	5 cut(s)	156, 203, 276, 788, 923
BtsCI	GGATG	2 cut(s)	124, 753
BtsI	GCAGTG	1 cut(s)	919
BtsIMutI	CAGTG	5 cut(s)	378, 697, 919, 968, 986
Cac8I	GCNNGC	4 cut(s)	154, 261, 478, 948
CfoI	GCGC	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	641, 967
CspCI	CAANNNNNGTGG	2 cut(s)	616, 651
CviAII	CATG	4 cut(s)	86, 112, 158, 410
CviQI	GTAC	2 cut(s)	641, 967
DdeI	CTNAG	2 cut(s)	124, 205
DpnI	GATC	5 cut(s)	522, 577, 707, 776, 978
DpnII	GATC	5 cut(s)	520, 575, 705, 774, 976
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	4 cut(s)	167, 495, 688, 860
EarI	CTCTTC	4 cut(s)	167, 495, 688, 860
Ecl136II	GAGCTC	1 cut(s)	607
Eco147I	AGGCCT	3 cut(s)	203, 276, 923
Eco24I	GRGCYC	1 cut(s)	609
Eco53kI	GAGCTC	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	944
Eco88I	CYCGRG	1 cut(s)	697
EcoICRI	GAGCTC	1 cut(s)	607
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	609
Esp3I	CGTCTC	1 cut(s)	658
FaeI	CATG	4 cut(s)	89, 115, 161, 413
FaiI	YATR	7 cut(s)	38, 87, 113, 159, 354, 411, 740
FatI	CATG	4 cut(s)	85, 111, 157, 409
FbaI	TGATCA	2 cut(s)	774, 976
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	2 cut(s)	131, 740
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	2 cut(s)	272, 644
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	474
HaeIII	GGCC	5 cut(s)	156, 203, 276, 788, 923
HapII	CCGG	3 cut(s)	153, 572, 785
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	4 cut(s)	89, 115, 161, 413
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	2 cut(s)	233, 257
HinfI	GANTC	3 cut(s)	23, 484, 695
HpaII	CCGG	3 cut(s)	153, 572, 785
HphI	GGTGA	3 cut(s)	265, 549, 895
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	5 cut(s)	22, 166, 525, 688, 940
Hpy188III	TCNNGA	6 cut(s)	307, 542, 587, 709, 862, 974
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	835, 844
HpyAV	CCTTC	7 cut(s)	128, 193, 413, 434, 442, 880, 963
HpyCH4III	ACNGT	6 cut(s)	71, 382, 493, 692, 725, 971
HpyCH4V	TGCA	1 cut(s)	460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	354
HpyF3I	CTNAG	2 cut(s)	124, 205
Hsp92II	CATG	4 cut(s)	89, 115, 161, 413
HspAI	GCGC	1 cut(s)	346
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Ksp22I	TGATCA	2 cut(s)	774, 976
Kzo9I	GATC	5 cut(s)	520, 575, 705, 774, 976
LguI	GCTCTTC	3 cut(s)	495, 688, 860
LmnI	GCTCC	6 cut(s)	343, 544, 549, 818, 895, 984
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	1 cut(s)	762
MaeI	CTAG	2 cut(s)	272, 644
MaeIII	GTNAC	4 cut(s)	527, 555, 599, 692
MalI	GATC	5 cut(s)	522, 577, 707, 776, 978
MbiI	CCGCTC	1 cut(s)	547
MboI	GATC	5 cut(s)	520, 575, 705, 774, 976
MfeI	CAATTG	2 cut(s)	338, 443
MflI	RGATCY	1 cut(s)	575
MhlI	GDGCHC	3 cut(s)	322, 609, 900
MluCI	AATT	7 cut(s)	101, 338, 370, 443, 803, 847, 901
MlyI	GAGTC	1 cut(s)	689
MmeI	TCCRAC	3 cut(s)	96, 304, 305
MroNI	GCCGGC	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	961
MspA1I	CMGCKG	1 cut(s)	772
MspI	CCGG	3 cut(s)	153, 572, 785
MspR9I	CCNGG	1 cut(s)	573
MunI	CAATTG	2 cut(s)	338, 443
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	354
NaeI	GCCGGC	1 cut(s)	154
NciI	CCSGG	1 cut(s)	573
NdeII	GATC	5 cut(s)	520, 575, 705, 774, 976
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	4 cut(s)	89, 115, 161, 413
NlaIV	GGNNCC	3 cut(s)	305, 551, 577
NmuCI	GTSAC	2 cut(s)	555, 692
OliI	CACNNNNGTG	1 cut(s)	961
PaeR7I	CTCGAG	1 cut(s)	697
PceI	AGGCCT	3 cut(s)	203, 276, 923
PciSI	GCTCTTC	3 cut(s)	495, 688, 860
PcsI	WCGNNNNNNNCGW	1 cut(s)	839
PdiI	GCCGGC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	23, 484
PflFI	GACNNNGTC	2 cut(s)	380, 739
PflMI	CCANNNNNTGG	1 cut(s)	880
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	1 cut(s)	689
PpsI	GAGTC	1 cut(s)	689
Psp124BI	GAGCTC	1 cut(s)	609
PspN4I	GGNNCC	3 cut(s)	305, 551, 577
PspXI	VCTCGAGB	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	575
PsyI	GACNNNGTC	2 cut(s)	380, 739
PvuII	CAGCTG	1 cut(s)	772
RsaI	GTAC	2 cut(s)	642, 968
RsaNI	GTAC	2 cut(s)	641, 967
RseI	CAYNNNNRTG	1 cut(s)	961
SacI	GAGCTC	1 cut(s)	609
SapI	GCTCTTC	3 cut(s)	495, 688, 860
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	5 cut(s)	520, 575, 705, 774, 976
ScaI	AGTACT	1 cut(s)	642
SchI	GAGTC	1 cut(s)	689
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	3 cut(s)	322, 609, 900
SfaNI	GCATC	1 cut(s)	762
SfcI	CTRYAG	1 cut(s)	925
Sfr274I	CTCGAG	1 cut(s)	697
SlaI	CTCGAG	1 cut(s)	697
SmiMI	CAYNNNNRTG	1 cut(s)	961
SmlI	CTYRAG	2 cut(s)	428, 697
SmoI	CTYRAG	2 cut(s)	428, 697
Sse9I	AATT	7 cut(s)	101, 338, 370, 443, 803, 847, 901
SseBI	AGGCCT	3 cut(s)	203, 276, 923
SsiI	CCGC	5 cut(s)	313, 388, 547, 560, 566
SspMI	CTAG	2 cut(s)	272, 644
SstI	GAGCTC	1 cut(s)	609
StuI	AGGCCT	3 cut(s)	203, 276, 923
StyD4I	CCNGG	1 cut(s)	571
TaaI	ACNGT	6 cut(s)	71, 382, 493, 692, 725, 971
TaqI	TCGA	3 cut(s)	144, 698, 842
TasI	AATT	7 cut(s)	101, 338, 370, 443, 803, 847, 901
TatI	WGTACW	1 cut(s)	640
TfiI	GAWTC	2 cut(s)	23, 484
TscAI	CASTG	5 cut(s)	385, 697, 919, 968, 986
TseFI	GTSAC	2 cut(s)	555, 692
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	2 cut(s)	555, 692
TspDTI	ATGAA	3 cut(s)	17, 735, 860
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	5 cut(s)	385, 697, 919, 968, 986
Tth111I	GACNNNGTC	2 cut(s)	380, 739
Van91I	CCANNNNNTGG	1 cut(s)	880
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	2 cut(s)	101, 803
XhoI	CTCGAG	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	2 cut(s)	272, 644
ZrmI	AGTACT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.